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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000872 ID=TCONS_00000872|Name=TCONS_00000872|organism=Clytia hemisphaerica|type=transcript|length=2218bp
GCACTCCTTAGCGTTGAGTTTATTTGTTGTAAACTTTCTATCTTTGATAG
ATGCAGGTGTTTTAATAGTCTTTAATGAAACCTCATGGGAACCTCATGAC
AAAGTGACGATAGTTTCCGCAGATTCTCGGATATAAAAGGCAGTAAATTT
GAAGTTGGAGTTTAGAATTTTGCAGATAATGACATCCATTTGGCCACCAG
AACATAGAAGaaacaaaTTATCAACATCAACAACAAGTGCTTTAACCATG
GTCATTAAGAAAGCGTTAGAATCATTCTATCTTTCCGCTGAAGTATTGGA
AAAAATACGGCAAAGTGGACTATACCATGATTCAAAGACCTTCGTCGATA
TGCCACTCAAAGTGGATTACTCAGCCAAACTACAAAAGAAGATATTAGAA
TGTACAGATCCTAAAGATTTGCTTAAAATTCTTCACCGTTATTTCGAACA
GCCAGGAGTCAATGAATTGATGAAAGTCAATTTGGAAATTGATTCCCATC
CAGAACCGAAATTTATCTCCAATATCAAAGATCCTGAATACAAATCATGG
GCTATGCATCTTTGTAAAATATGGAGCAAACTGGTCAGACGTGTTAATCC
AGAATTATTAAATCGCCAAGATAACCACTCACTTATTTACTTAGAAAAAC
CATTTGTCATCCCAGGTGGGCGATTCCGTGAAGTTTATTACTGGGATACA
TACTGGTCAATACTTGGACTCTTACATTCTGAAATGTTTGATATCGTCAA
AGGTATCTTAGAAAACCTATTATCACTAGTCGAGAGATACGGCTTTGTAC
CAAACGGTGGCCGAAAGTATTACGAAAACCGTAGTCAGCCACCATTTTTG
ACATTGATGGTCAAAGCTTATTATGATGTTACTAAAGATATCGACTTTGC
TAAAAGTAGTTTACCAACATTAATGAAGGAACATGATTTTTGGATGGAAC
AAAGATCAGTATTGATTGAGTacaataacaaactatacactATGAATCGT
TATAATGTATCTACCGATCAACCAAGACCGGAATCTTTTAAAGAAGACTT
AGAAACAATGGAAAAAGCTGGTCACCATAACGACAAATCAAAGCAAACAG
AGATTTATTCCAATCTTGCATCAGCAGCAGAAAGTGGTTGGGATTTCTCA
TCAAGATGGTTAAAAGAATCGCACAAACTGGAGACAATTGTTACTCGTGA
TATCGTACCAGTTGATTTGAACTCAGTTCTGTGTGCTGTAGAATTCACTT
TATCAGATCTTCACCAAATAGTTGCCACAGGCGATTACGCTAGccaaaaa
tatagcaaaatggCCAACAAACGTCTTTCAGGTATTGATGAATTATTCTG
GAACGAGCAACATGGATTGTGGTGTGATTTCGATTTACCAAAGAACGAAA
TCTTATCCGAATATTACGCATCAGTTTTTTTCCCAATCTGGATTTTCTCA
ACATATGCAGCTCAACCATCAGCCAATTTAGGTCGAGCATTTGAGAAAGT
TAAAAGTCTTGGTGTTCTAAATTATTGTGGTGGTCTACCAACATCTTTAA
TTGAATCTGGTCAACAATGGGATTTTCCAAATGTTTGGCCACCTCTTCAG
CACATTGCTGTAGAATCTCTTGATCCAAGAACCAACCAAATGTCATCATC
AGAGCAACAAGAAGCTGGGAAAAATCTCGCTAAACAGTTCATAGAAAACG
CCTATATTTCTTGGAAGACCACTGGTCACATGTACGAAAAATACGATGTG
AGAGAATATGGTAAAGCTGGACATGGAGGTGAATATGATGTCCAGGAAGG
CTTTGGATGGACAAATGGTGTCATTCTTGATTTCCTTTCTAAATACGGAC
ATGAACTTTCTGCACCTAAAATTAATACTGGTAAAGAgtgatgtttttga
attttaagactATTATTTTAAACTTCATTATTTTGACATAAcactgtaaa
tattttgaatttttctaaatttcatatCTTTAGCGCTTTTAACTTTTCGT
AACGAACTTGAGGAGTGCTTCCAGACAGGTTATTTTCGATGCTCAGAATT
TCTTATAATCTGAATGATTTCCCTTTAAAGAGTGTCTTTGATAATGAAAT
TCATATGTGCATgtaattatttattttaaaaatattatttaaaagaAGTC
AGTTTGTAAAacgattttatatattttattataAAACAAGAACAATACAA
ATGTATAAAGTAAAAAGC Run BLAST on NCBI transcript from alignment at sc0000005:1213691..1218902- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000872 ID=TCONS_00000872|Name=TCONS_00000872|organism=Clytia hemisphaerica|type=transcript|length=5212bp|location=Sequence derived from alignment at sc0000005:1213691..1218902- (Clytia hemisphaerica)
GCACTCCTTAGCGTTGAGTTTATTTGTTGTAAACTTTCTATCTTTGATAG
ATGCAGGTGTTTTAATAGTCTTTAATGAAACCTCATGGGAACCTCATGAC
AAAGTGACGATAGTTTCCGCAGATTCTCGGATATAAAAGGCAGTAAATTT
GAAGTTGGAGTTTAGAATTTTGCAGATAATGACATCCATTTGGCCACCAG
AACATAGAAGGTAGGATCTTCCTCGGCTTAAACATTGATTTCTCTAATAT
CCTTAGTTACGGCATGGACTGGACATCTATCTTTTATTGTCTCTTTGAAG
CGTAGCTTCGTTGCCGCCTGTATTTTAAAATTGGTATAATAAATCCAACA
ATATTCCGTCATAATTTTATTTCTTTGAATTGTTTAGGTAAAATGATTGA
TAGAGTTTGAACATTACTCCTAATGCACAAAAAAATTATTTTCAATTTTT
TTCACGAGTTTGCAATATATTTTATCAACATTTTCAAGTCTGAAATGCAG
AATTTCAACTGCGTGTATACTTTTGAATCCCTTTTGTCACTCCAATAATT
TTTTTTATGACTTGAAAATAGCTTGCCAAAGTTGAAAGCCTATGTCATAA
GAATACCTTAAGGGAAGAAATTTTCGCGAGAAGAAATTTTCGCGGAATTT
AATTTCGCGAATGAGCCGATTTTAAAAGTTTCACGGGATTTAATTTCGCG
ATTGAGAAATTTCAAAAGAATTTTTTTTACAGAGAAAATGTTTTTCATAT
TTTTCCTCGATTTCAAGACATATTTCAGTCACATTAACAATATTTAACAA
CAAAATAATAACATCAAATATGAATGTTTCTATGTTAAGTCATGATTAAA
CTTCATCGCCGTCTTTTTCCTCCAAAAAATCGAATTTCGCGGAATTTAAT
TTCGCGATTTAGCCATTTTGGTGTGTTTCGCGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGAATTTCAACTGCGTGTATACTTTTGAATC
CCTTTTGTCACTCCAATAATTTTTTTTTATGACTTGAAAAAAATAGCTTG
CCAAAGTTGAGTGCCTGTGTCATAAAAATATCGAAATTAGAATGTGACAC
TCTCTAAAATTATTAGACACTTTTAAGTCAAAATTTGGAAATATTAGTCG
GAGTTTTGAGAAGCTGACGATGATTTTGCCTCTGTTATCTTTGTTATGAT
ATAGATAAAAGACTTGAGAAAAGTAGAACAACGGAGACTTTTGTCGAAGT
TTTGACGTTGTTAGCAAGGTATTCCCAAGAGGTATATCATCAAAACTTAT
TGTTTCATTTGATGATTTTAACGAGGCGGCAACGAAGCTAGCAGTGTTAT
CTTTAAAAAGACAAAGGAGATGGCCCAGTCGTTTATATGTTCATGGTTAC
GGTTAAGCTTTTACTAATTAGCTGTATTACCTCAAGGTACTGTTTAAATT
GCCTTTGATTGACGATAAAAGTCGAAGATTTGCCTCCTCGATTGTTTAAA
TGGCTATTAACGATGTTTGCTAGCAATAAATTAGATTTTAATGACTTTTA
TTGGCTATTATAGTCGTTTTTCAATTCGAAAAATTTTTCGTCTAGATAAA
TAAATTTACATTTATTTCAAACAAGCGCCTTTTTCGAGGCGCTGCTCAGC
TTATGACGTTTTCACGTTTTTCTGAGAATAGATATGTAGATTTTTTGTCA
AGTCATTCCAGGACATAACAAGGCAAAATCACACCCACACTCAATCGAGA
TAGCTGAAACACACCTCCTGAAAATCCCTCTTCATTCTTATGCATCATTT
CAACTGCGTCATATTATCAAAATTTCCTTTCCAATTTTTTGGCTGGAATT
CACAGTCTATTATAAGAACCCAACTATTACTTTACATATTTTGAATTCAT
TCTCTTACATTGTTTGGTAATGACTCTTAAATGTTATATTGATTTTGTGG
TCTAATAACAATCAAGAGATTTCTAAAAAAATTTAAATATATCTTCAGAC
TTTTATAACCCAAGCAAGATGTTATGAAATCTTTTCTAGTTGAAACTATG
CCTATAAAATTAGCACGATGACAGTATGACATTGCATAAATTGTGTCATA
CGTCACGTTCTTTTCAATCGAAAAATTTCTTACCTATGTGATCAATAATT
GAGATAAATGAAACAGCAATATATAAAAGTATAAAACCCACGAGCTTTGG
TAGCCTAACGTGATGTATTAACACATTTCAGAACTTTATTACGCATGCTC
TTTATCAAACAATGCAAAAAGAAAAAGTGCCTATTACAGTTATTTATCAA
AATCCATTTTACTATACCGGTTAAAGCTATAAATAAGGAAGCAATAGATT
GTAAAACCTCAAAAACACCTCTACCATACCTACAGGTCTTATATAAACCT
AGAAATAGTTTGGTATATATTCAAACGAAACGATTGATTTGCCATAGGCT
CTTTAGTTTGTGAGAATGGAGGAATAATGAAAAGAACCTTTTGCAAATAA
ACTGGATAAAAGAGTGGATATCTATGATTTGTTCTGCTTTAGGCCTGTCA
ATAGATATATTTTGATGGTAATTTGAGGTATTAAGTGTTAGATATATGCG
TTAGTTGATTTTACAAGGGGGTTGCGAATGTTTCTGGAAGAGATTAGATT
CAGTGTAGAATGGAATTAGCAAGGTCAGCTTTAAAAAGCACTAAATATTT
GGTGTGTTGATTAATATTCTATGTTCGGGGTTAATGTGTTTTGGTGTGCG
AATTAGTCTAAGATCAATTTCCCCCAGAGTTACCGTAAGATTGATTTACT
CAATATTTACAAATTACGAGGTTCCTGAATGTATTTTCCTAGTACGTTTG
TTATGGAGATATCTCTTAAACTTATTTTTTGCTTTCATTTTTTAGAAACA
AATTATCAACATCAACAACAAGTGCTTTAACCATGGTCATTAAGAAAGCG
TTAGAATCATTCTATCTTTCCGCTGAAGTATTGGAAAAAATACGGCAAAG
TGGACTATACCATGATTCAAAGACCTTCGTCGATATGCCACTCAAAGTGG
ATTACTCAGCCAAACTACAAAAGAAGATATTAGAATGTACAGATCCTAAA
GATTTGCTTAAAATTCTTCACCGTTATTTCGAACAGCCAGGAGTCAATGA
ATTGATGAAAGTCAATTTGGAAATTGATTCCCATCCAGAACCGAAATTTA
TCTCCAATATCAAAGATCCTGAATACAAATCATGGGCTATGCATCTTTGT
AAAATATGGAGCAAACTGGTCAGACGTGTTAATCCAGAATTATTAAATCG
CCAAGATAACCACTCACTTATTTACTTAGAAAAACCATTTGTCATCCCAG
GTGGGCGATTCCGTGAAGTTTATTACTGGGATACATACTGGTCAATACTT
GGACTCTTACATTCTGAAATGTTTGATATCGTCAAAGGTATCTTAGAAAA
CCTATTATCACTAGTCGAGAGATACGGCTTTGTACCAAACGGTGGCCGAA
AGTATTACGAAAACCGTAGTCAGCCACCATTTTTGACATTGATGGTCAAA
GCTTATTATGATGTTACTAAAGATATCGACTTTGCTAAAAGTAGTTTACC
AACATTAATGAAGGAACATGATTTTTGGATGGAACAAAGATCAGTATTGA
TTGAGTACAATAACAAACTATACACTATGAATCGTTATAATGTATCTACC
GATCAACCAAGACCGGAATCTTTTAAAGAAGACTTAGAAACAATGGAAAA
AGCTGGTCACCATAACGACAAATCAAAGCAAACAGAGATTTATTCCAATC
TTGCATCAGCAGCAGAAAGTGGTTGGGATTTCTCATCAAGGTAAGTGTCT
AAATGAATTCTTTAGAACTTTTCTTTCTATCTCTATAATTTTTTCTAAAA
TTTGATTTAATAGTTTAGTACTACCCTGCATCTCATGCTTTTGTCGATAC
TAGATTTTAGTTAAGTTTTTAAACAAGTTAAACCTTTTTTGCCGGGGATT
TGTTTTGTTTTAGTTGAAAATCTTGTGTTTGCAATGATGGACTTGACTGA
ATTCATGTTGTTTTAAAATGACTCATCTTTTCCCTTTTCCTATTTACAGA
TGGTTAAAAGAATCGCACAAACTGGAGACAATTGTTACTCGTGATATCGT
ACCAGTTGATTTGAACTCAGTTCTGTGTGCTGTAGAATTCACTTTATCAG
ATCTTCACCAAATAGTTGCCACAGGCGATTACGCTAGCCAAAAATATAGC
AAAATGGCCAACAAACGTCTTTCAGGTATTGATGAATTATTCTGGAACGA
GCAACATGGATTGTGGTGTGATTTCGATTTACCAAAGAACGAAATCTTAT
CCGAATATTACGCATCAGTTTTTTTCCCAATCTGGATTTTCTCAACATAT
GCAGCTCAACCATCAGCCAATTTAGGTCGAGCATTTGAGAAAGTTAAAAG
TCTTGGTGTTCTAAATTATTGTGGTGGTCTACCAACATCTTTAATTGAAT
CTGGTCAACAATGGGATTTTCCAAATGTTTGGCCACCTCTTCAGCACATT
GCTGTAGAATCTCTTGATCCAAGAACCAACCAAATGTCATCATCAGAGCA
ACAAGAAGCTGGGAAAAATCTCGCTAAACAGTTCATAGAAAACGCCTATA
TTTCTTGGAAGACCACTGGTCACATGTACGAAAAATACGATGTGAGAGAA
TATGGTAAAGCTGGACATGGAGGTGAATATGATGTCCAGGAAGGCTTTGG
ATGGACAAATGGTGTCATTCTTGATTTCCTTTCTAAATACGGACATGAAC
TTTCTGCACCTAAAATTAATACTGGTAAAGAGTGATGTTTTTGAATTTTA
AGACTATTATTTTAAACTTCATTATTTTGACATAACACTGTAAATATTTT
GAATTTTTCTAAATTTCATATCTTTAGCGCTTTTAACTTTTCGTAACGAA
CTTGAGGAGTGCTTCCAGACAGGTTATTTTCGATGCTCAGAATTTCTTAT
AATCTGAATGATTTCCCTTTAAAGAGTGTCTTTGATAATGAAATTCATAT
GTGCATGTAATTATTTATTTTAAAAATATTATTTAAAAGAAGTCAGTTTG
TAAAACGATTTTATATATTTTATTATAAAACAAGAACAATACAAATGTAT
AAAGTAAAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000872-exon-sc0000005-1575043694:1218693..1218902 | TCONS_00000872-exon-sc0000005-1575043694:1218693..1218902 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1575043694:1215013..1215957 | TCONS_00000872-exon-sc0000005-1575043694:1215013..1215957 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1575043694:1213691..1214753 | TCONS_00000872-exon-sc0000005-1575043694:1213691..1214753 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1510915933:1218693..1218902 | TCONS_00000872-exon-sc0000005-1510915933:1218693..1218902 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1510915933:1215013..1215957 | TCONS_00000872-exon-sc0000005-1510915933:1215013..1215957 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1510915933:1213691..1214753 | TCONS_00000872-exon-sc0000005-1510915933:1213691..1214753 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1491911889:1218693..1218902 | TCONS_00000872-exon-sc0000005-1491911889:1218693..1218902 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1491911889:1215013..1215957 | TCONS_00000872-exon-sc0000005-1491911889:1215013..1215957 | Clytia hemisphaerica | exon |
| TCONS_00000872-exon-sc0000005-1491911889:1213691..1214753 | TCONS_00000872-exon-sc0000005-1491911889:1213691..1214753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1213691..1218902 - |
Blast
BLAST of TCONS_00000872 vs. Swiss-Prot (Human)
Match: TREA (Trehalase OS=Homo sapiens GN=TREH PE=1 SV=2) HSP 1 Score: 384.415 bits (986), Expect = 3.437e-123 Identity = 213/539 (39.52%), Postives = 312/539 (57.88%), Query Frame = 2
Query: 275 FYLSAEVLEKIRQSGLYHDSKTFVDMPLKVDYSAKLQKKILECTD-----PKDLLK-ILHRYFEQPGVNELMKVNLEIDSHPEPKFISNIKDPEYKSWAMHLCKIWSKLVRRVNPELLNRQDNHSLIYLEKPFVIPGGRFREVYYWDTYWSILGLLHSEMFDIVKGILENLLSLVERYGFVPNGGRKYYENRSQPPFLTLMVKAYYDVTKDIDFAKSSLPTLMKEHDFWMEQRSVLIEYNNKLYTMNRYNVSTDQPRPESFKEDLETMEKAGHHNDKSKQTEIYSNLASAAESGWDFSSRWL---KESHKLETIVTRDIVPVDLNSVLCAVEFTLSDLHQIVATGDYASQKYSKMANKRLSGIDELFWNEQHGLWCDFDLPKNEILSEYYASVFFPIWIFSTYAAQPSANLGRAFEKVKSLGVLNYCGGLPTSLIESGQQWDFPNVWPPLQHIAVESLDPRTNQMSSSEQQEAGKNLAKQFIENAYISWKTTGHMYEKYDVREYGKAGHGGEYDVQEGFGWTNGVILDFLSKYGHELSA 1864
Y E+L +++ + LY D K FVDMPL + LQ D P++ L+ +H +F+ G + ++ D P+F+ I D + ++WA L ++W KL +++ PE+L+ + SLIY E PF++PGGRF E YYWD+YW + GLL SEM + VKG+L+N L LV+ YG VPNGGR YY RSQPP LTLM+ Y T D F + ++ TL E DFW + R+V + K Y +NRY V PRPES+ +D+E + + ++ +++ L + AESGWDFSSRWL + L I T +VPVDLN+ LC E +S+ + + D + KY + ++RL+ ++ + W+EQ G W D+DL K + E+Y S P+W ++ A+ +A + ++ +L Y G+PTSL ++GQQWDFPN W PLQ + + L + QE LA+ +I + + MYEKYDV G+ G GGEY+VQEGFGWTNGV+L L +YG L++
Sbjct: 32 IYCHGELLNQVQMAKLYQDDKQFVDMPLSIAPEQVLQTFTELSRDHNHSIPREQLQAFVHEHFQAKG--QELQPWTPADWKDSPQFLQKISDAKLRAWAGQLHQLWKKLGKKMKPEVLSHPERFSLIYSEHPFIVPGGRFVEFYYWDSYWVMEGLLLSEMAETVKGMLQNFLDLVKTYGHVPNGGRVYYLQRSQPPLLTLMMDCYLTHTNDTAFLQENIETLALELDFWTKNRTVSVSLEGKNYLLNRYYVPYGGPRPESYSKDVELADTLPEGDREA----LWAELKAGAESGWDFSSRWLIGGPNPNSLSGIRTSKLVPVDLNAFLCQAEELMSNFYSRLGN-DSQATKYRILRSQRLAALNTVLWDEQTGAWFDYDLEKKKKNREFYPSNLTPLWA-GCFSDPGVAD--KALKYLEDNRILTYQYGIPTSLQKTGQQWDFPNAWAPLQDLVIRGL----AKAPLRRAQEVAFQLAQNWIRTNFDVYSQKSAMYEKYDVSNGGQPGGGGEYEVQEGFGWTNGVVLMLLDRYGDRLTS 556
The following BLAST results are available for this feature:
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