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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000870 ID=TCONS_00000870|Name=TCONS_00000870|organism=Clytia hemisphaerica|type=transcript|length=2001bpRun BLAST on NCBI transcript from alignment at sc0000005:1163886..1174656- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000870 ID=TCONS_00000870|Name=TCONS_00000870|organism=Clytia hemisphaerica|type=transcript|length=10771bp|location=Sequence derived from alignment at sc0000005:1163886..1174656- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000870 vs. Swiss-Prot (Human)
Match: FRYL (Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2) HSP 1 Score: 219.55 bits (558), Expect = 2.154e-59 Identity = 187/578 (32.35%), Postives = 292/578 (50.52%), Query Frame = 3
Query: 3 HDE------KPREIPENTRQLKPVTLQGEGWGSVHSTQMVLNNLFYLTVXXXXXXX-XXXXXCWSALCARWEQNVTRILDYLIVMAGVCGTPVLM-HAKKVAIYIARAKTEKTIHVLTEELRLTEIVTNFWDRLDCPPYIKPLNKCITPPSTVSTGRKNEDYKKNITSPKKQPSLDSEYPEMRSESPSFPQQAPFNNRLSTE------RSSINSARNFAESVLESVKASQMASQIEQKKTETGSSELWMLNWVLKAHSMQGVGLPLPMPYELQYFAPITQAFP-LASPPAQLYRCNFSLMLLAEIVSDQR-DISWIFYXXXXXXXXXXXXDHAKPLVHENCKRLIINLLVVLVCDGDRSTIAKALM---DFH-----TVSSTA---LNRSASLKN------SNVKTSADGAVLESDELLKDEDRENLVAQAGGPELEERGLSI--DERAREVIEYLAKSDCKPLWAFEDITPRNGTVKSADQLESFLQIIVQLFDDALPNAL-LPGRWARESLHWATSCSSRHYAGRSFQIFRSLKIPLSWPMLSDILQRLVESVADSSDDVQGYFMEILMTFLAEVD 1628
HDE K RE+ +R+ L+GEGWGS +T MVLNNL Y+T KY + + E+E W+ L W +N+ IL +LI + GV P L+ + KKV +Y+ R KT + + L EL+LT+ V++ +D PPY R YK P S M + + P P + S +NS N LES +S E++K++ S L+ NW LK G PLP P ++P+ P +SP L+RCN +++LL +++ D + W YL LLLH F+G DH P V+E+CKRL+++LL+V+ + + T+A L+ +F+ TV A N +A + + + T + + + + + ++ L E +S+ D + + ++E++ PLW ED++ +N ++KSA+QL +FL+ +V +F + + L + +L A SCSSRHYAGRSFQIFR+LK PL+ LSD+L RLVE+V D +D QG+ +E+L+T + +D
Sbjct: 1330 HDEDEDDSLKDRELMVTSRRW----LRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVSELQLTDPVSSGVTHMDNPPYY----------------RITSSYK----IPSVTSGTTSSSNTMVAPTDGNPDNKPIKENIEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSD--SMPLYS-NWRLKVME-HNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVKQVAHLDYNFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHTTILNEVDISVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSSSEGIHLEHHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLTATTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAID 1879 The following BLAST results are available for this feature:
BLAST of TCONS_00000870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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