|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000860 ID=TCONS_00000860|Name=TCONS_00000860|organism=Clytia hemisphaerica|type=transcript|length=9787bp transcript from alignment at sc0000005:1152691..1188981- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000860 ID=TCONS_00000860|Name=TCONS_00000860|organism=Clytia hemisphaerica|type=transcript|length=36291bp|location=Sequence derived from alignment at sc0000005:1152691..1188981- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000860 vs. Swiss-Prot (Human)
Match: FRYL (Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2) HSP 1 Score: 960.674 bits (2482), Expect = 0.000e+0 Identity = 581/1330 (43.68%), Postives = 840/1330 (63.16%), Query Frame = 2
Query: 446 PGELALHFMMCSFVAESDKKIDAFMRS--DRPLSKSLQRGEDPQFDQXXXXXXXXXXXXXXXXXKTLYKWYERQIAGNPDDSGSKSP-SRIKSGSESPRPGSRASFREKDILWERRNLAVEFIFCLVLIEVLKQLSLHPVEDSLINYIENLAFKHFKENNADAPTSAVTANQNIITALYAEVIGVLAQTRFQSIRKRFKQEFKD------NINNSQVLLNITMGLKYIRIKLYPVDEVEESFLFLQECAHMFQEKSLVKEVKYAFASLFVEILIPVAATAKREYSIPAVKKFVDILFKETMDMSKKGKHSMAVYPLVTALLCISQKPFFLTNWGGFLNMCLNSIKSRDVKMQRMAMECLYRLLWVYIIRIKCEAHTITINRLRSITDTLFPKNSRTIIPRNIPLTIFVKIIQFIAQEKLDFAMQDIIFDLLNIGK--KSGTLNPERMNIGLRAFLVIADNLQRKEGSPPMPSTIGQLPSGNXXXXXX--XXXXXXEEAARNIGVVTYYTSVRRALDSILKSLDVNVGRPMTLINPQNVNKEANDMITGERKAKIDLFRTCVAAIPKCIPDGMSKIDLVELVARLTLHMDEELRNLAFTALQGLIVDFPEYRDEILKGYIEFTLKEVHDSFPSLIENSIRMLAQLLIQWRMALIQPVGSTTDKYLEMSMHCSKTANEKETQSAHTLYCVEGFALSMLCSIKAMHRKLAFTVLKEVRQLYKCI-YPDSKDASVIDIIESCAPAVIEKALSCVSGSDKSSLGLSP-QMDXXXXXXXXXXXXXXQKDNVSN---------CISRELWSHCLAGFLEEIFTRCKHWAQMFYFTWPHINNRLFTIYGVIDPNADFDSIKSRTSLISFKAPRTPANVFDVSLWRNYLIFLC---------------CAPPKNVLNTSPIATITAXXXXXXXXXXXXKLPADYPRLSEVFRTAIMLVKSESYEIREAAVTGLGKTNPKAHPQLIEELQPLIRDVLDXXXXXXXXXXXXXXXXXXXXXIFAANAEQGCFRYSLS-QVDNNN--ILTCLAEYIEGMRVILESENDKTDAGLMQLRLYFSRFLHKMVKSIPNHMKSSLLRNQG-RHHLFLLLASWCGHFNV--NSLXXXXXXXXXXIELEFSALEAMCALLCCGQVFDQKALTVSNGYLYKLLDTMLISKNNKVNKLGQETVELLLENNESIPALLNFVVDRCYTGQRGISNGCFLALANVFSKHPYSCQLIPLICVVLFKTADPSQEIREKAAQLICILDRRFFGYM----VPFRSAVAA--------YTYGNQAFSQQLAFTHPELTLPLLSEMTLRFETATMVGXTIF 4264
PGE + + F +++KKI+ M ++ LS+SLQRGED QFDQL+SS+SSV+EHCL SLL+TL+ WY RQ G D+S P S KS + + RE+D L ERR+LAV+FIFCLVL+EVLKQ+ +HPV D L++ + NLAFKHFK + T+ T N +II LYAEVIGVLAQ++FQ++RK+F E K+ + + Q ++++ MG+K+ R+K+YPV++ E SF F+QECA F E K++K+A A LFVEILIPVAA K E ++P +K FV++L++ T ++S + KHS+A+YPL+T LLC+SQK FFL NW FL CL+ +K++D KM R+A+E LYRLLWVY+IRIKCE++T+T +RL SI LFPK SR+++PR+ PL IFVKIIQFIAQE+LDFAM++IIFDLL++GK K+ T+NPERMNIGLR FLVIAD+LQ+K+G PPMP+T LPSGNTL+VKK LT+E A+ IG+ YY VR+ALDSIL+ LD VGRPM + + Q NKE DMITGERK KIDLFRTC+AAIP+ IPDGMS+ DL+EL+ARLT+HMDEELR LAF LQ L++DFP++R+++L G++ F ++EV D P+L++N+++ML QL+ QW+ A Q D ++ S + + ++ + VEGFAL +LCS + R+LA +VL+E+R L+ + P D ID+++ +P+++E + ++G+D+++L P +DL LAE ++ Q D +S ++ W L+ FL++ KH + + W RL + +D N+ ++ K T+ T ++ + + LWRNYLI C C+PP+ L ++P + + P S +F+ + +++SES EI E+ V GLG+TNP A +LIEEL P+I++ L+R+ E ++++++RD+LR+QL RIF A+ G +S S +DN + L EY++ R +LE+EN+K L +R +FS + +++++P H + S+ Q RH LF+L + W G F++ L + ++ AL+AM A+LCCG V D L+ S+GYLYK LD +L S + KV++LG E V LLLE N L+ + VDRCYTG ++ GCF A+ANVF Y C + L+ ++LFK AD S+ I E A QL+ IL+ + F Y V V + Y+ S++LA +PELTL + SE++ R +TA G +
Sbjct: 12 PGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQ-NGTEDESYEYRPRSSTKSKGDEQQ-------RERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTN--TGNVHIIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVK-DKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGEPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLARLTIHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQA-AQMHNKNQDTQHGVANGASHPPPLERSPYSNVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFALLEIPKGDDELAIDVMDRLSPSILESFIH-LTGADQTTLLYCPSSIDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQ-ENLPKHCSTAVSYAWMFAYTRLQLLSPQVDINSPINAKKVNTT--------TSSDSY-IGLWRNYLILCCSAATSSSSTSAGSVRCSPPE-TLASTPDSGYSIDSKII-----------GIPSPSSLFKHIVPMMRSESMEITESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSIFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLS-SDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSGRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQVM 1305 HSP 2 Score: 360.533 bits (924), Expect = 2.470e-99 Identity = 319/1040 (30.67%), Postives = 507/1040 (48.75%), Query Frame = 1
Query: 4276 AKKVAIYIARAKTEKTIHVLTEELRLTEIVTNFWDRLDCPPYIKPLNKCITPPSTVSTGRKNEDYKKNITSPKKQPSLDSEYPEMRSESPSFPQQAPFNNRLSTER------SSINSARNFAESVLESVKASQMASQIEQKKTETGSSELWMLNWVLKAHSMQGVGLPLPMPYELQYFAPITQAFP-LASPPAQLYRCNFSLMLLAEIVSDQR-DISWIFYXXXXXXXXXXXXDHAKPLVHENCKRLIINLLVVLVCDGDRSTIAKALM---DFH-----TVSSTA---LNRSASLKN------SNVKTSADGAVLESDELLKDEDRENLVAQAGGPELEERGLSI--DERAREVIEYLAKSDCKPLWAFEDITPRNGTVKSADQLESFLQIIVQLFDDALPNAL-LPGRWARESLHWATSCSSRHYAGRSFQIFRSLKIPLSWPMLSDILQRLVESVADSSDDVQGYFMEILMTFLAEVD-YAFNDRPKSVLEQMDTIARRTSSLQDLNPAEQQEQGQDLVAESMDTLNAIGKPPHNTSTMISQQHIRSHS---------------------YDVDHSHSTRL-RVQGFEGKRKDRRYDSEMALQTHSVMNSPLAXXXXXXXXXXXXQLPESPYDMLARLFWIGVSLLESDYEHEFLLAIKLLEKVLETLDLKSSSGIDRVELVFSKLNWNSFPGVQSLLLKGLTCSATAEPTLGLLSKLTNLTSIAIIDPAPSSGLSLNVIALLPKLILNFDDPDEFCKDAAHNIEIACRSNT--SLRDLSLIMKMYKEREYSKSVQFWIEVVCKNMIEAYPNLDXXXXXXXXXXXXMGPAIFQQPVLTIIFALVKYAESASPGMKQFHSHLLRVITSHVKDVNLWKDSLNILKLXXXXXXXXXXXXGTQTGITSSQLVQPQGSIGSLLTLAPKLPWGGSNLSTSGENPFHFSSQMFKKELPGRTLEFTYNMENTPVIGSKHGDIREENSEHG----ITVCGTSAP-------------CWRKPHGSQRRTKERLAQLLPLCGHKGGL 7185
KKV +Y+ R KT + + L EL+LT+ V++ +D PPY R YK P S M + + P P + S +NS N LES +S E++K++ S L+ NW LK G PLP P ++P+ P +SP L+RCN +++LL +++ D + W YL LLLH F+G DH P V+E+CKRL+++LL+V+ + + T+A L+ +F+ TV A N +A + + + T + + + + + ++ L E +S+ D + + ++E++ PLW ED++ +N ++KSA+QL +FL+ +V +F + + L + +L A SCSSRHYAGRSFQIFR+LK PL+ LSD+L RLVE+V D +D QG+ +E+L+T + +D A + +L + + + + A ++ GQ LN P +++S + + RS+S D +HS+ L R + R+ YD Q P +++A +FWI SLLESDYE+E+LLA++LL K+L L L S +++E V SKL W +FPG+Q L LKG T ++T E T+ LLSKL +++ ++DP+ SG LN++ LLP LI +FD P +FCK+ A I C +L +L+ +M +Y YS+ WI VVC+ + +++ + L+ L E+LE G + QQ +L II++L+ + + ++ KQF+ ++++I +V+ WK++LNILKLVVS S+ LV P PK +GG + S E F KELPG+TL+F +++ TP+IG+K+GD +G I V +++ W++P SQRRT+E+L +L LCG + GL
Sbjct: 1423 VKKVIVYLGRDKTMQLLEELVSELQLTDPVSSGVTHMDNPPYY----------------RITSSYK----IPSVTSGTTSSSNTMVAPTDGNPDNKPIKENIEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSD--SMPLYS-NWRLKVME-HNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVKQVAHLDYNFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHTTILNEVDISVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSSSEGIHLEHHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLTATTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPIMGNKYAANRKSTGQ---------LNLSTSPINSSSYLGYNSNARSNSLRLSLIGDRRGDRRRSNTLDIMDGRINHSSSLARTRSLSSLREKGMYD---------------------------VQSTTEPTNLMATIFWIAASLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSASTQEMTVHLLSKLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDTTFNLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQS-PYWKEALNILKLVVSR---------------SASLVVPSD--------IPK-TYGGD--TGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGDQHSAAGRNGKPKVIAVTRSTSSTSSGSNSNALVPVSWKRPQLSQRRTREKLMNVLSLCGPESGL 2375 The following BLAST results are available for this feature:
BLAST of TCONS_00000860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.