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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000858 ID=TCONS_00000858|Name=TCONS_00000858|organism=Clytia hemisphaerica|type=transcript|length=5781bpRun BLAST on NCBI transcript from alignment at sc0000005:1152691..1174656- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000858 ID=TCONS_00000858|Name=TCONS_00000858|organism=Clytia hemisphaerica|type=transcript|length=21966bp|location=Sequence derived from alignment at sc0000005:1152691..1174656- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000858 vs. Swiss-Prot (Human)
Match: FRYL (Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2) HSP 1 Score: 407.527 bits (1046), Expect = 8.020e-115 Identity = 358/1137 (31.49%), Postives = 562/1137 (49.43%), Query Frame = 3
Query: 3 HDE------KPREIPENTRQLKPVTLQGEGWGSVHSTQMVLNNLFYLTVXXXXXXX-XXXXXCWSALCARWEQNVTRILDYLIVMAGVCGTPVLM-HAKKVAIYIARAKTEKTIHVLTEELRLTEIVTNFWDRLDCPPYIKPLNKCITPPSTVSTGRKNEDYKKNITSPKKQPSLDSEYPEMRSESPSFPQQAPFNNRLSTER------SSINSARNFAESVLESVKASQMASQIEQKKTETGSSELWMLNWVLKAHSMQGVGLPLPMPYELQYFAPITQAFP-LASPPAQLYRCNFSLMLLAEIVSDQR-DISWIFYXXXXXXXXXXXXDHAKPLVHENCKRLIINLLVVLVCDGDRSTIAKALM---DFH-----TVSSTA---LNRSASLKN------SNVKTSADGAVLESDELLKDEDRENLVAQAGGPELEERGLSI--DERAREVIEYLAKSDCKPLWAFEDITPRNGTVKSADQLESFLQIIVQLFDDALPNAL-LPGRWARESLHWATSCSSRHYAGRSFQIFRSLKIPLSWPMLSDILQRLVESVADSSDDVQGYFMEILMTFLAEVD-YAFNDRPRSVLEQMETIARRTSSLQDLNPAEQQEQGQDLVAESMDTLNAIGKPPHNTSTMISQQHIRSHS---------------------YDVDHSHSTRL-RVQGFEGKRKDRRYDSEMALQTHSVMNSPLAXXXXXXXXXXXXQLPESPYDMLARLFWIGVSLLESDYEHEFLLAIKLLEKVLETLDLKSSSGIDRVELVFSKLNWNSFPGVQSLLLKGLTCSATAEPTLGLLSKLTNLTSIAIIDPAPSSGLSLNVIALLPKLILNFDDPDEFCKDAAHNIEIACRSNT--SLRDLSLIMKMYKEREYSKSVQFWIEVVCKNMIEAYPNLDXXXXXXXXXXXXMGPAIFQQPVLTIIFALVKYAESASPGMKQFHSHLLRVITSHVKDVNLWKDSLNILKLXXXXXXXXXXXXGTQTGITSSQLVQPQGSIGSLLTLAPKLPWGGSNLSTSGENPFHFSSQMFKKELPGRTLEFTYNMENTPVIGSKHGDIREENSEHG----ITVCGTSAP-------------CWRKPHGSQRRTKERLAQLLPLCGHKGGL 3179
HDE K RE+ +R+ L+GEGWGS +T MVLNNL Y+T KY + + E+E W+ L W +N+ IL +LI + GV P L+ + KKV +Y+ R KT + + L EL+LT+ V++ +D PPY R YK P S M + + P P + S +NS N LES +S E++K++ S L+ NW LK G PLP P ++P+ P +SP L+RCN +++LL +++ D + W YL LLLH F+G DH P V+E+CKRL+++LL+V+ + + T+A L+ +F+ TV A N +A + + + T + + + + + ++ L E +S+ D + + ++E++ PLW ED++ +N ++KSA+QL +FL+ +V +F + + L + +L A SCSSRHYAGRSFQIFR+LK PL+ LSD+L RLVE+V D +D QG+ +E+L+T + +D A + +L + + + + A ++ GQ LN P +++S + + RS+S D +HS+ L R + R+ YD Q P +++A +FWI SLLESDYE+E+LLA++LL K+L L L S +++E V SKL W +FPG+Q L LKG T ++T E T+ LLSKL +++ ++DP+ SG LN++ LLP LI +FD P +FCK+ A I C +L +L+ +M +Y YS+ WI VVC+ + +++ + L+ L E+LE G + QQ +L II++L+ + + ++ KQF+ ++++I +V+ WK++LNILKLVVS S+ LV P PK +GG + S E F KELPG+TL+F +++ TP+IG+K+GD +G I V +++ W++P SQRRT+E+L +L LCG + GL
Sbjct: 1330 HDEDEDDSLKDRELMVTSRRW----LRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVSELQLTDPVSSGVTHMDNPPYY----------------RITSSYK----IPSVTSGTTSSSNTMVAPTDGNPDNKPIKENIEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSD--SMPLYS-NWRLKVME-HNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVKQVAHLDYNFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHTTILNEVDISVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSSSEGIHLEHHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLTATTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPIMGNKYAANRKSTGQ---------LNLSTSPINSSSYLGYNSNARSNSLRLSLIGDRRGDRRRSNTLDIMDGRINHSSSLARTRSLSSLREKGMYD---------------------------VQSTTEPTNLMATIFWIAASLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSASTQEMTVHLLSKLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDTTFNLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQS-PYWKEALNILKLVVSR---------------SASLVVPSD--------IPK-TYGGD--TGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGDQHSAAGRNGKPKVIAVTRSTSSTSSGSNSNALVPVSWKRPQLSQRRTREKLMNVLSLCGPESGL 2375 The following BLAST results are available for this feature:
BLAST of TCONS_00000858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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