TCONS_00000850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000850
Unique NameTCONS_00000850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000850 ID=TCONS_00000850|Name=TCONS_00000850|organism=Clytia hemisphaerica|type=transcript|length=1254bp
AGGAAATGAACTCAGCAATTTTCTTCCCTcctgataaaaataaaagtccT
CCATAAATTAGTAGCTAATCATTCTTAAAAAACTTGCTGCGGTGCAAAGA
ACATTTGTGGTTTTACTACAGCACAACAAGGAAGGATGTTTACAATTGTC
TTTATGATTCTCAGGTTTTCTGCTTCTGTAAATGCGGGAAACAGGCATGC
AAGTGaatttgaagcaTTAGCGCGAAAATGGGCACCACTTATCAGGTTGG
ATAAATGTGAATTATGGAAACCCTCATCAGttgattttttcctcaaaaat
gtCAATCTTGTGTCTGGAGATGGAAAGATCATCAAAACTAAACTCGATTC
TTGTAACCTTCCACAATGTGACGAAAATTGTTATCTACAGACCAAAGATG
AGATAGCAACACCAAGCACCTGGgatttgaagtttttctttggaCAATCT
GTATCAGATGTTCCTCTTTATGTTTTTATCGATCAAACCAATCCAACAAG
GTTACGAATCAGGTATTCAGTATTTTCTCCATATAATCGTGGAAAACCTG
TTTGTATTGGACGAATCTTAAGGGATCACTGCCCATGCGAGTTGATTCAA
GGTAAATGCTTTTGTCCACGTGAAACCAAATGTGAAGGGTATTACAAAGA
GTTTGGACACCACGTCAGCGATTGGGAGTATATGGATCTGTTTTTCGATC
CTACTGGACGTATCCCAGCAGCTATCAATCTGATCTCCCACGGTATTCCG
GCCGTCTATTTTTTCAATGGTAAAGACTTTGTCAATCGTCAAACCGGACA
AAAGATTCAATTCCAAGGTACACACCCGATTGCTTATAAAACACGTGGCT
CGCATGGTTTCCGTTCAGCTGCCGGTGAAGTTGTGTACTTCCGTTTATTT
GGCAATAACGAGCTTTCTGATATAACAAGCGATGGTGAAGAATGGAAAAC
ATGGGAAAATCTTCAAATCACCCAAGTGAAACGAAAATACACTGGGGATT
TTTCATTTGCTAATTACAAAGGAAGATGGGGAAATTTAAAACGTGGTTGT
GAATTTTATGAAGCTGTCTCTGGTGAATGTATTCTTGGTAATGGAATACG
ATTGAGTATTTAACAAAGTGTAGATTATTTTTGATTATCTTTTATTCATA
TTTCTgatattaaatattttcaaaactgaaaatccATCCAACTCGAAATT
CTATTTCTGTCATAAAGTACTCAGAGAATCAAAGTGACTCATCGTAGATA
AAAA
Run BLAST on NCBI

protein sequence of TCONS_00000850-protein

>TCONS_00000850-protein ID=TCONS_00000850-protein|Name=TCONS_00000850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MFTIVFMILRFSASVNAGNRHASEFEALARKWAPLIRLDKCELWKPSSVD
FFLKNVNLVSGDGKIIKTKLDSCNLPQCDENCYLQTKDEIATPSTWDLKF
FFGQSVSDVPLYVFIDQTNPTRLRIRYSVFSPYNRGKPVCIGRILRDHCP
CELIQGKCFCPRETKCEGYYKEFGHHVSDWEYMDLFFDPTGRIPAAINLI
SHGIPAVYFFNGKDFVNRQTGQKIQFQGTHPIAYKTRGSHGFRSAAGEVV
YFRLFGNNELSDITSDGEEWKTWENLQITQVKRKYTGDFSFANYKGRWGN
LKRGCEFYEAVSGECILGNGIRLSI
Run BLAST on NCBI

transcript from alignment at sc0000005:1038304..1039847-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000850 ID=TCONS_00000850|Name=TCONS_00000850|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000005:1038304..1039847- (Clytia hemisphaerica)
AGGAAATGAACTCAGCAATTTTCTTCCCTCCTGATAAAAATAAAAGTCCT CCATAAATTAGTAGCTAATCATTCTTAAAAAACTTGCTGCGGTGCAAAGA ACATTTGTGGTTTTACTACAGCACAACAAGGAAGGATGTTTACAATTGTC TTTATGATTCTCAGGTTTTCTGCTTCTGTAAATGCGGGAAACAGGCATGC AAGTGGTAAGTAAAATGATTTGGATTTTTTCATTCGAATTGCCGACTAAA GCTAGCTAACATTCGGAAAGTTCACCGAGCTACAGAGAAAAAGTAAATAT ACATTTTTTGGGACAAATCTCTAATCGATTCTTAAGAAGTTGATACAGAG GGCGCAGATAAAGTAGGAAAACATAGCAGCATAAATAAAACTTGTTTGTG AGGTGTTGTGGATAGAATTGACATATCTCTGTTTATTATGATCAGGTAAA AATCCTTCCTTCCTACTTTTTCACGAATATTCCCTTCCTTTTCAGAATTT GAAGCATTAGCGCGAAAATGGGCACCACTTATCAGGTTGGATAAATGTGA ATTATGGAAACCCTCATCAGTTGATTTTTTCCTCAAAAATGTCAATCTTG TGTCTGGAGATGGAAAGATCATCAAAACTAAACTCGATTCTTGTAACCTT CCACAATGTGACGAAAATTGTTATCTACAGACCAAAGATGAGATAGCAAC ACCAAGCACCTGGGATTTGAAGTTTTTCTTTGGACAATCTGTATCAGATG TTCCTCTTTATGTTTTTATCGATCAAACCAATCCAACAAGGTTACGAATC AGGTATTCAGTATTTTCTCCATATAATCGTGGAAAACCTGTTTGTATTGG ACGAATCTTAAGGGATCACTGCCCATGCGAGTTGATTCAAGGTAAATGCT TTTGTCCACGTGAAACCAAATGTGAAGGGTATTACAAAGAGTTTGGACAC CACGTCAGCGATTGGGAGTATATGGATCTGTTTTTCGATCCTACTGGACG TATCCCAGCAGCTATCAATCTGATCTCCCACGGTATTCCGGCCGTCTATT TTTTCAATGGTAAAGACTTTGTCAATCGTCAAACCGGACAAAAGATTCAA TTCCAAGGTACACACCCGATTGCTTATAAAACACGTGGCTCGCATGGTTT CCGTTCAGCTGCCGGTGAAGTTGTGTACTTCCGTTTATTTGGCAATAACG AGCTTTCTGATATAACAAGCGATGGTGAAGAATGGAAAACATGGGAAAAT CTTCAAATCACCCAAGTGAAACGAAAATACACTGGGGATTTTTCATTTGC TAATTACAAAGGAAGATGGGGAAATTTAAAACGTGGTTGTGAATTTTATG AAGCTGTCTCTGGTGAATGTATTCTTGGTAATGGAATACGATTGAGTATT TAACAAAGTGTAGATTATTTTTGATTATCTTTTATTCATATTTCTGATAT TAAATATTTTCAAAACTGAAAATCCATCCAACTCGAAATTCTATTTCTGT CATAAAGTACTCAGAGAATCAAAGTGACTCATCGTAGATAAAAA

Coding sequence (CDS) from alignment at sc0000005:1038304..1039847-

>TCONS_00000850 ID=TCONS_00000850|Name=TCONS_00000850|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000005:1038304..1039847- (Clytia hemisphaerica)
AATTTGAAGCATTAGCGCGAAAATGGGCACCACTTATCAGGTTGGATAAA
TGTGAATTATGGAAACCCTCATCAGTTGATTTTTTCCTCAAAAATGTCAA
TCTTGTGTCTGGAGATGGAAAGATCATCAAAACTAAACTCGATTCTTGTA
ACCTTCCACAATGTGACGAAAATTGTTATCTACAGACCAAAGATGAGATA
GCAACACCAAGCACCTGGGATTTGAAGTTTTTCTTTGGACAATCTGTATC
AGATGTTCCTCTTTATGTTTTTATCGATCAAACCAATCCAACAAGGTTAC
GAATCAGGTATTCAGTATTTTCTCCATATAATCGTGGAAAACCTGTTTGT
ATTGGACGAATCTTAAGGGATCACTGCCCATGCGAGTTGATTCAAGGTAA
ATGCTTTTGTCCACGTGAAACCAAATGTGAAGGGTATTACAAAGAGTTTG
GACACCACGTCAGCGATTGGGAGTATATGGATCTGTTTTTCGATCCTACT
GGACGTATCCCAGCAGCTATCAATCTGATCTCCCACGGTATTCCGGCCGT
CTATTTTTTCAATGGTAAAGACTTTGTCAATCGTCAAACCGGACAAAAGA
TTCAATTCCAAGGTACACACCCGATTGCTTATAAAACACGTGGCTCGCAT
GGTTTCCGTTCAGCTGCCGGTGAAGTTGTGTACTTCCGTTTATTTGGCAA
TAACGAGCTTTCTGATATAACAAGCGATGGTGAAGAATGGAAAACATGGG
AAAATCTTCAAATCACCCAAGTGAAACGAAAATACACTGGGGATTTTTCA
TTTGCTAATTACAAAGGAAGATGGGGAAATTTAAAACGTGGTTGTGAATT
TTATGAAGCTGTCTCTGGTGAATGTATTCTTGGTAATGGAATACGATTGA
GTATTTAAATGTTTACAATTGTCTTTATGATTCTCAGGTTTTCTGCTTCT
GTAAATGCGGGAAACAGGCATGCAAGTGAATTTGAAGCATTAGCGCGAAA
ATGGGCACCACTTATCAGGTTGGATAAATGTGAATTATGGAAACCCTCAT
CAGTTGATTTTTTCCTCAAAAATGTCAATCTTGTGTCTGGAGATGGAAAG
ATCATCAAAACTAAACTCGATTCTTGTAACCTTCCACAATGTGACGAAAA
TTGTTATCTACAGACCAAAGATGAGATAGCAACACCAAGCACCTGGGATT
TGAAGTTTTTCTTTGGACAATCTGTATCAGATGTTCCTCTTTATGTTTTT
ATCGATCAAACCAATCCAACAAGGTTACGAATCAGGTATTCAGTATTTTC
TCCATATAATCGTGGAAAACCTGTTTGTATTGGACGAATCTTAAGGGATC
ACTGCCCATGCGAGTTGATTCAAGGTAAATGCTTTTGTCCACGTGAAACC
AAATGTGAAGGGTATTACAAAGAGTTTGGACACCACGTCAGCGATTGGGA
GTATATGGATCTGTTTTTCGATCCTACTGGACGTATCCCAGCAGCTATCA
ATCTGATCTCCCACGGTATTCCGGCCGTCTATTTTTTCAATGGTAAAGAC
TTTGTCAATCGTCAAACCGGACAAAAGATTCAATTCCAAGGTACACACCC
GATTGCTTATAAAACACGTGGCTCGCATGGTTTCCGTTCAGCTGCCGGTG
AAGTTGTGTACTTCCGTTTATTTGGCAATAACGAGCTTTCTGATATAACA
AGCGATGGTGAAGAATGGAAAACATGGGAAAATCTTCAAATCACCCAAGT
GAAACGAAAATACACTGGGGATTTTTCATTTGCTAATTACAAAGGAAGAT
GGGGAAATTTAAAACGTGGTTGTGAATTTTATGAAGCTGTCTCTGGTGAA
TGTATTCTTGGTAATGGAATACGATTGAGTATTTAAATGTTTACAATTGT
CTTTATGATTCTCAGGTTTTCTGCTTCTGTAAATGCGGGAAACAGGCATG
CAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000512XLOC_000512Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000850-proteinTCONS_00000850-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000850-exon-sc0000005-1575043694:1039643..1039847TCONS_00000850-exon-sc0000005-1575043694:1039643..1039847Clytia hemisphaericaexon
TCONS_00000850-exon-sc0000005-1575043694:1038304..1039352TCONS_00000850-exon-sc0000005-1575043694:1038304..1039352Clytia hemisphaericaexon
TCONS_00000850-exon-sc0000005-1510915933:1039643..1039847TCONS_00000850-exon-sc0000005-1510915933:1039643..1039847Clytia hemisphaericaexon
TCONS_00000850-exon-sc0000005-1510915933:1038304..1039352TCONS_00000850-exon-sc0000005-1510915933:1038304..1039352Clytia hemisphaericaexon
TCONS_00000850-exon-sc0000005-1491911889:1039643..1039847TCONS_00000850-exon-sc0000005-1491911889:1039643..1039847Clytia hemisphaericaexon
TCONS_00000850-exon-sc0000005-1491911889:1038304..1039352TCONS_00000850-exon-sc0000005-1491911889:1038304..1039352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1038304..1039847 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.174592 0.0408628 1.37323 0.318932 5.81291 2.46455 5.12545 7.50355 53.9396 13.7576 1.52917 0.548572 0.0360896 0.113295 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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