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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000850 ID=TCONS_00000850|Name=TCONS_00000850|organism=Clytia hemisphaerica|type=transcript|length=1254bp
AGGAAATGAACTCAGCAATTTTCTTCCCTcctgataaaaataaaagtccT
CCATAAATTAGTAGCTAATCATTCTTAAAAAACTTGCTGCGGTGCAAAGA
ACATTTGTGGTTTTACTACAGCACAACAAGGAAGGATGTTTACAATTGTC
TTTATGATTCTCAGGTTTTCTGCTTCTGTAAATGCGGGAAACAGGCATGC
AAGTGaatttgaagcaTTAGCGCGAAAATGGGCACCACTTATCAGGTTGG
ATAAATGTGAATTATGGAAACCCTCATCAGttgattttttcctcaaaaat
gtCAATCTTGTGTCTGGAGATGGAAAGATCATCAAAACTAAACTCGATTC
TTGTAACCTTCCACAATGTGACGAAAATTGTTATCTACAGACCAAAGATG
AGATAGCAACACCAAGCACCTGGgatttgaagtttttctttggaCAATCT
GTATCAGATGTTCCTCTTTATGTTTTTATCGATCAAACCAATCCAACAAG
GTTACGAATCAGGTATTCAGTATTTTCTCCATATAATCGTGGAAAACCTG
TTTGTATTGGACGAATCTTAAGGGATCACTGCCCATGCGAGTTGATTCAA
GGTAAATGCTTTTGTCCACGTGAAACCAAATGTGAAGGGTATTACAAAGA
GTTTGGACACCACGTCAGCGATTGGGAGTATATGGATCTGTTTTTCGATC
CTACTGGACGTATCCCAGCAGCTATCAATCTGATCTCCCACGGTATTCCG
GCCGTCTATTTTTTCAATGGTAAAGACTTTGTCAATCGTCAAACCGGACA
AAAGATTCAATTCCAAGGTACACACCCGATTGCTTATAAAACACGTGGCT
CGCATGGTTTCCGTTCAGCTGCCGGTGAAGTTGTGTACTTCCGTTTATTT
GGCAATAACGAGCTTTCTGATATAACAAGCGATGGTGAAGAATGGAAAAC
ATGGGAAAATCTTCAAATCACCCAAGTGAAACGAAAATACACTGGGGATT
TTTCATTTGCTAATTACAAAGGAAGATGGGGAAATTTAAAACGTGGTTGT
GAATTTTATGAAGCTGTCTCTGGTGAATGTATTCTTGGTAATGGAATACG
ATTGAGTATTTAACAAAGTGTAGATTATTTTTGATTATCTTTTATTCATA
TTTCTgatattaaatattttcaaaactgaaaatccATCCAACTCGAAATT
CTATTTCTGTCATAAAGTACTCAGAGAATCAAAGTGACTCATCGTAGATA
AAAA Run BLAST on NCBI protein sequence of TCONS_00000850-protein >TCONS_00000850-protein ID=TCONS_00000850-protein|Name=TCONS_00000850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MFTIVFMILRFSASVNAGNRHASEFEALARKWAPLIRLDKCELWKPSSVD
FFLKNVNLVSGDGKIIKTKLDSCNLPQCDENCYLQTKDEIATPSTWDLKF
FFGQSVSDVPLYVFIDQTNPTRLRIRYSVFSPYNRGKPVCIGRILRDHCP
CELIQGKCFCPRETKCEGYYKEFGHHVSDWEYMDLFFDPTGRIPAAINLI
SHGIPAVYFFNGKDFVNRQTGQKIQFQGTHPIAYKTRGSHGFRSAAGEVV
YFRLFGNNELSDITSDGEEWKTWENLQITQVKRKYTGDFSFANYKGRWGN
LKRGCEFYEAVSGECILGNGIRLSI Run BLAST on NCBI transcript from alignment at sc0000005:1038304..1039847- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000850 ID=TCONS_00000850|Name=TCONS_00000850|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000005:1038304..1039847- (Clytia hemisphaerica)
AGGAAATGAACTCAGCAATTTTCTTCCCTCCTGATAAAAATAAAAGTCCT
CCATAAATTAGTAGCTAATCATTCTTAAAAAACTTGCTGCGGTGCAAAGA
ACATTTGTGGTTTTACTACAGCACAACAAGGAAGGATGTTTACAATTGTC
TTTATGATTCTCAGGTTTTCTGCTTCTGTAAATGCGGGAAACAGGCATGC
AAGTGGTAAGTAAAATGATTTGGATTTTTTCATTCGAATTGCCGACTAAA
GCTAGCTAACATTCGGAAAGTTCACCGAGCTACAGAGAAAAAGTAAATAT
ACATTTTTTGGGACAAATCTCTAATCGATTCTTAAGAAGTTGATACAGAG
GGCGCAGATAAAGTAGGAAAACATAGCAGCATAAATAAAACTTGTTTGTG
AGGTGTTGTGGATAGAATTGACATATCTCTGTTTATTATGATCAGGTAAA
AATCCTTCCTTCCTACTTTTTCACGAATATTCCCTTCCTTTTCAGAATTT
GAAGCATTAGCGCGAAAATGGGCACCACTTATCAGGTTGGATAAATGTGA
ATTATGGAAACCCTCATCAGTTGATTTTTTCCTCAAAAATGTCAATCTTG
TGTCTGGAGATGGAAAGATCATCAAAACTAAACTCGATTCTTGTAACCTT
CCACAATGTGACGAAAATTGTTATCTACAGACCAAAGATGAGATAGCAAC
ACCAAGCACCTGGGATTTGAAGTTTTTCTTTGGACAATCTGTATCAGATG
TTCCTCTTTATGTTTTTATCGATCAAACCAATCCAACAAGGTTACGAATC
AGGTATTCAGTATTTTCTCCATATAATCGTGGAAAACCTGTTTGTATTGG
ACGAATCTTAAGGGATCACTGCCCATGCGAGTTGATTCAAGGTAAATGCT
TTTGTCCACGTGAAACCAAATGTGAAGGGTATTACAAAGAGTTTGGACAC
CACGTCAGCGATTGGGAGTATATGGATCTGTTTTTCGATCCTACTGGACG
TATCCCAGCAGCTATCAATCTGATCTCCCACGGTATTCCGGCCGTCTATT
TTTTCAATGGTAAAGACTTTGTCAATCGTCAAACCGGACAAAAGATTCAA
TTCCAAGGTACACACCCGATTGCTTATAAAACACGTGGCTCGCATGGTTT
CCGTTCAGCTGCCGGTGAAGTTGTGTACTTCCGTTTATTTGGCAATAACG
AGCTTTCTGATATAACAAGCGATGGTGAAGAATGGAAAACATGGGAAAAT
CTTCAAATCACCCAAGTGAAACGAAAATACACTGGGGATTTTTCATTTGC
TAATTACAAAGGAAGATGGGGAAATTTAAAACGTGGTTGTGAATTTTATG
AAGCTGTCTCTGGTGAATGTATTCTTGGTAATGGAATACGATTGAGTATT
TAACAAAGTGTAGATTATTTTTGATTATCTTTTATTCATATTTCTGATAT
TAAATATTTTCAAAACTGAAAATCCATCCAACTCGAAATTCTATTTCTGT
CATAAAGTACTCAGAGAATCAAAGTGACTCATCGTAGATAAAAA Coding sequence (CDS) from alignment at sc0000005:1038304..1039847- >TCONS_00000850 ID=TCONS_00000850|Name=TCONS_00000850|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000005:1038304..1039847- (Clytia hemisphaerica)
AATTTGAAGCATTAGCGCGAAAATGGGCACCACTTATCAGGTTGGATAAA
TGTGAATTATGGAAACCCTCATCAGTTGATTTTTTCCTCAAAAATGTCAA
TCTTGTGTCTGGAGATGGAAAGATCATCAAAACTAAACTCGATTCTTGTA
ACCTTCCACAATGTGACGAAAATTGTTATCTACAGACCAAAGATGAGATA
GCAACACCAAGCACCTGGGATTTGAAGTTTTTCTTTGGACAATCTGTATC
AGATGTTCCTCTTTATGTTTTTATCGATCAAACCAATCCAACAAGGTTAC
GAATCAGGTATTCAGTATTTTCTCCATATAATCGTGGAAAACCTGTTTGT
ATTGGACGAATCTTAAGGGATCACTGCCCATGCGAGTTGATTCAAGGTAA
ATGCTTTTGTCCACGTGAAACCAAATGTGAAGGGTATTACAAAGAGTTTG
GACACCACGTCAGCGATTGGGAGTATATGGATCTGTTTTTCGATCCTACT
GGACGTATCCCAGCAGCTATCAATCTGATCTCCCACGGTATTCCGGCCGT
CTATTTTTTCAATGGTAAAGACTTTGTCAATCGTCAAACCGGACAAAAGA
TTCAATTCCAAGGTACACACCCGATTGCTTATAAAACACGTGGCTCGCAT
GGTTTCCGTTCAGCTGCCGGTGAAGTTGTGTACTTCCGTTTATTTGGCAA
TAACGAGCTTTCTGATATAACAAGCGATGGTGAAGAATGGAAAACATGGG
AAAATCTTCAAATCACCCAAGTGAAACGAAAATACACTGGGGATTTTTCA
TTTGCTAATTACAAAGGAAGATGGGGAAATTTAAAACGTGGTTGTGAATT
TTATGAAGCTGTCTCTGGTGAATGTATTCTTGGTAATGGAATACGATTGA
GTATTTAAATGTTTACAATTGTCTTTATGATTCTCAGGTTTTCTGCTTCT
GTAAATGCGGGAAACAGGCATGCAAGTGAATTTGAAGCATTAGCGCGAAA
ATGGGCACCACTTATCAGGTTGGATAAATGTGAATTATGGAAACCCTCAT
CAGTTGATTTTTTCCTCAAAAATGTCAATCTTGTGTCTGGAGATGGAAAG
ATCATCAAAACTAAACTCGATTCTTGTAACCTTCCACAATGTGACGAAAA
TTGTTATCTACAGACCAAAGATGAGATAGCAACACCAAGCACCTGGGATT
TGAAGTTTTTCTTTGGACAATCTGTATCAGATGTTCCTCTTTATGTTTTT
ATCGATCAAACCAATCCAACAAGGTTACGAATCAGGTATTCAGTATTTTC
TCCATATAATCGTGGAAAACCTGTTTGTATTGGACGAATCTTAAGGGATC
ACTGCCCATGCGAGTTGATTCAAGGTAAATGCTTTTGTCCACGTGAAACC
AAATGTGAAGGGTATTACAAAGAGTTTGGACACCACGTCAGCGATTGGGA
GTATATGGATCTGTTTTTCGATCCTACTGGACGTATCCCAGCAGCTATCA
ATCTGATCTCCCACGGTATTCCGGCCGTCTATTTTTTCAATGGTAAAGAC
TTTGTCAATCGTCAAACCGGACAAAAGATTCAATTCCAAGGTACACACCC
GATTGCTTATAAAACACGTGGCTCGCATGGTTTCCGTTCAGCTGCCGGTG
AAGTTGTGTACTTCCGTTTATTTGGCAATAACGAGCTTTCTGATATAACA
AGCGATGGTGAAGAATGGAAAACATGGGAAAATCTTCAAATCACCCAAGT
GAAACGAAAATACACTGGGGATTTTTCATTTGCTAATTACAAAGGAAGAT
GGGGAAATTTAAAACGTGGTTGTGAATTTTATGAAGCTGTCTCTGGTGAA
TGTATTCTTGGTAATGGAATACGATTGAGTATTTAAATGTTTACAATTGT
CTTTATGATTCTCAGGTTTTCTGCTTCTGTAAATGCGGGAAACAGGCATG
CAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000850-exon-sc0000005-1575043694:1039643..1039847 | TCONS_00000850-exon-sc0000005-1575043694:1039643..1039847 | Clytia hemisphaerica | exon |
| TCONS_00000850-exon-sc0000005-1575043694:1038304..1039352 | TCONS_00000850-exon-sc0000005-1575043694:1038304..1039352 | Clytia hemisphaerica | exon |
| TCONS_00000850-exon-sc0000005-1510915933:1039643..1039847 | TCONS_00000850-exon-sc0000005-1510915933:1039643..1039847 | Clytia hemisphaerica | exon |
| TCONS_00000850-exon-sc0000005-1510915933:1038304..1039352 | TCONS_00000850-exon-sc0000005-1510915933:1038304..1039352 | Clytia hemisphaerica | exon |
| TCONS_00000850-exon-sc0000005-1491911889:1039643..1039847 | TCONS_00000850-exon-sc0000005-1491911889:1039643..1039847 | Clytia hemisphaerica | exon |
| TCONS_00000850-exon-sc0000005-1491911889:1038304..1039352 | TCONS_00000850-exon-sc0000005-1491911889:1038304..1039352 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1038304..1039847 - |
Blast
The following BLAST results are available for this feature:
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