TCONS_00000849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000849
Unique NameTCONS_00000849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000849 ID=TCONS_00000849|Name=TCONS_00000849|organism=Clytia hemisphaerica|type=transcript|length=450bp
TACAGAAGACTATATTTTTACCATGGTCGGTGGTCAAGGATATGCGATAG
AAACCTTTTTCAAGTACCACCCTGATGCAAGCTTTAGAAGAATGTATACA
TTTATGTCTAAATACTTTGTCAAAAGTGAAATGGAAGGTGTTGAGAAAAT
ATTAAACGGGACAATCCAAGCGATGATAACAGATACGAGCTCTTTACCAG
TAATCAATCAGGACCTTGCCACAATGAGTGGATGTGATACCAAAGTGGAA
CTGGTACCCGAATCATACATTGGAAAACATGGTCTAGGTTTTGGATTCCG
TAAAAATTACACATTTGGTAAAATTATATCAGATACCCTACTCGATCTGC
AAGATGCAGTTGATGGAGAAAGTTACCTGAAGAAAAAGTGGTTTCTTGAT
TATTGTCATGACTACACACCAGTCGAGCAGTTTCATTGGACTTATTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00000849-protein

>TCONS_00000849-protein ID=TCONS_00000849-protein|Name=TCONS_00000849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
TEDYIFTMVGGQGYAIETFFKYHPDASFRRMYTFMSKYFVKSEMEGVEKI
LNGTIQAMITDTSSLPVINQDLATMSGCDTKVELVPESYIGKHGLGFGFR
KNYTFGKIISDTLLDLQDAVDGESYLKKKWFLDYCHDYTPVEQFHWTYF
Run BLAST on NCBI

transcript from alignment at sc0000005:1032595..1034568-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000849 ID=TCONS_00000849|Name=TCONS_00000849|organism=Clytia hemisphaerica|type=transcript|length=1974bp|location=Sequence derived from alignment at sc0000005:1032595..1034568- (Clytia hemisphaerica)
TACAGAAGACTATATTTTTACCATGGTCGGTGGTCAAGGATATGCGATAG AAACCTTTTTCAAGTACCACCCTGATGCAAGCTTTAGAAGAATGTATACA TTTATGTCTAAATACTTTGTCAAAAGTGAAATGGAAGGTGTTGAGAAAAT ATTAAACGGGTAAGGTTCCGTCGAAGTTGACATTTACTGAATAAAGATTT TCCTCTATTTATTTTATATGATAAGTTAACTGTATCTACGGCTTAGTGGT GTAGTGGTTATCATCCTTGACTCTCGCCTGGAGGTCCGAGTTCGATACCC ACCGTGTCTCTACGATTCACTTAGCTAGTGAATATACCTTCACCCGGGTC AACCTATGTCATTTGAGGGAAATTGGGTACCATTACTCTGATTCAAGAGT GTGGGTAGATTAGACAGACATTGTGACGTGTCGTGACACCCATAAGGTTC GGTCTCGCGTGAACATCGCTCTCCCAGTGTCGTTCGAGTGTCATGGTATA CACCATGGCTTAGCAGCTCGCGTCTGTCAAGTCGTAGTGTCTGTCAGTGC CGTGATTCCTACTCCTTCGTGGGTAGGACCCATCCCAAATGCATTCGGCT CATATCTATCTATCTATATGGCTTATAACTAGCCTGTTCTCTGTATAGAT CTCACTTACCTACGAAAGCTTATCTAGACCATCAACATGAGGTGAACTTC CCCTTCTCACAGACCCAGTATACCCTTCAGCCGGTGGGAATAAGAATAAC GGACTGAAACTCGACGGGGATTGATATTCCAATACCATTGTTTTCAAGTC AGAGAATTTAGTGAGAATGGAAAAAATAAATATTACACTCTTAAGATTTG TTTATTTGGTTATTGTCAATNCTGGAGGTCCGAGTTCGATACCCACCGTG TCTCTACGATTCACTTAGCTAGTGAATATACCTTCACCCGGGTCAACCTA TGTCATTTGAGGGAAATTGGGTACCATTACTCTGATTCAAGAGTGTGGGT AGATTAGACAGACATTGTGACGTGTCGTGACACTCATAAGGTTCGGTCTC GCGTGAGCATCGCTCTCCCAGTGTCGTTCGAGTGTCATGGTATACACCAT GGCTTAGCAGGCTCACGTCTGTCAAATCTTAGTGTTTGTCAGTGCCGTGA TTCCTACTCCTTCCTGGGTAGGACCCATCCCCAATGCATTCGGCTCAAAT CTATCTATCTATATGGCTTATAGCTAGCCTGTTCTCTGTATAGATCTCAC TTACCTACAAAAGCTTATCTAGACCATCAACACGAGATGAACTTCCCCTT CTCACAGACCCAGTATACCCTTCAGCCGGTGGGAATAAGAATAACGGAGT GAAACTCGACGGGGATTGATATTCCAATACCATTGTTTTCAAATCAAAGA ATTTAGTGAGAATGGAAAAATTAAATATTACACTCTTTAAGATTTGTTTA TTTGGTTATTGTCAATTGGAACAAAAATTGAAGTATAATTTTCAACTAGG GACGATATTTTGACCAAAGTTTCCGGTGGGAGTGGTCCTACATCGGCTCT TTGAGACGGGGGTATATAGACGTAAAATTTAAATACTATCCACGGGTAGC AAACCGTCAACTAGCTTGTAATAACCTAATCACGTGTTCATTTCATTCCG GTATCGTTCATATCTACCTTTTTGCAATTTCAGGACAATCCAAGCGATGA TAACAGATACGAGCTCTTTACCAGTAATCAATCAGGACCTTGCCACAATG AGTGGATGTGATACCAAAGTGGAACTGGTACCCGAATCATACATTGGAAA ACATGGTCTAGGTTTTGGATTCCGTAAAAATTACACATTTGGTAAAATTA TATCAGATACCCTACTCGATCTGCAAGATGCAGTTGATGGAGAAAGTTAC CTGAAGAAAAAGTGGTTTCTTGATTATTGTCATGACTACACACCAGTCGA GCAGTTTCATTGGACTTATTTTTC

Coding sequence (CDS) from alignment at sc0000005:1032595..1034568-

>TCONS_00000849 ID=TCONS_00000849|Name=TCONS_00000849|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000005:1032595..1034568- (Clytia hemisphaerica)
GACAATCCAAGCGATGATAACAGATACGAGCTCTTTACCAGTAATCAATC
AGGACCTTGCCACAATGAGTGGATGTGATACCAAAGTGGAACTGGTACCC
GAATCATACATTGGAAAACATGGTCTAGGTTTTGGATTCCGTAAAAATTA
CACATTTGGTAAAATTATATCAGATACCCTACTCGATCTGCAAGATGCAG
TTGATGGAGAAAGTTACCTGAAGAAAAAGTGGTTTCTTGATTATTGTCAT
GACTACACACCAGTCGAGCAGTTTCATTGGACTTATTTTACAGAAGACTA
TATTTTTACCATGGTCGGTGGTCAAGGATATGCGATAGAAACCTTTTTCA
AGTACCACCCTGATGCAAGCTTTAGAAGAATGTATACATTTATGTCTAAA
TACTTTGTCAAAAGTGAAATGGAAGGTGTTGAGAAAATATTAAACGGGAC
AATCCAAGCGATGATAACAGATACGAGCTCTTTACCAGTAATCAATCAGG
ACCTTGCCACAATGAGTGGATGTGATACCAAAGTGGAACTGGTACCCGAA
TCATACATTGGAAAACATGGTCTAGGTTTTGGATTCCGTAAAAATTACAC
ATTTGGTAAAATTATATCAGATACCCTACTCGATCTGCAAGATGCAGTTG
ATGGAGAAAGTTACCTGAAGAAAAAGTGGTTTCTTGATTATTGTCATGAC
TACACACCAGTCGAGCAGTTTCATTGGACTTATTTTACAGAAGACTATAT
TTTTACCATGGTCGGTGGTCAAGGATATGCGATAGAAACCTTTTTCAAGT
ACCACCCTGATGCAAGCTTTAGAAGAATGTATACATTTATGTCTAAATAC
TTTGTCAAAAGTGAAATGGAAGGTGTTGAGAAAATATTAAACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000511XLOC_000511Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000849-proteinTCONS_00000849-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000849-exon-sc0000005-1575043694:1034410..1034568TCONS_00000849-exon-sc0000005-1575043694:1034410..1034568Clytia hemisphaericaexon
TCONS_00000849-exon-sc0000005-1575043694:1032595..1032885TCONS_00000849-exon-sc0000005-1575043694:1032595..1032885Clytia hemisphaericaexon
TCONS_00000849-exon-sc0000005-1510915933:1034410..1034568TCONS_00000849-exon-sc0000005-1510915933:1034410..1034568Clytia hemisphaericaexon
TCONS_00000849-exon-sc0000005-1510915933:1032595..1032885TCONS_00000849-exon-sc0000005-1510915933:1032595..1032885Clytia hemisphaericaexon
TCONS_00000849-exon-sc0000005-1491911889:1034410..1034568TCONS_00000849-exon-sc0000005-1491911889:1034410..1034568Clytia hemisphaericaexon
TCONS_00000849-exon-sc0000005-1491911889:1032595..1032885TCONS_00000849-exon-sc0000005-1491911889:1032595..1032885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1032595..1034568 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294421 0.143553 0.333359 0 0 0 0.189262 0.177185 0.744309 0.307316 0.298288 0.196083 0.19581 0.406702 0 0 0.11051 0.226539 0 0 0.426995 0.208273 0.506366 0.153453 0.790267 1.12847 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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