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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000847 ID=TCONS_00000847|Name=TCONS_00000847|organism=Clytia hemisphaerica|type=transcript|length=2142bp
atttgatcattttttaagccagcttcaacatccaaaggacttttagtgcg
ttcagctacagcttaaccggcgtgcgacgccgggtaccggctagtatacT
TTAATTCgtttgatttattttgtatTACAGTGTAACTTAAATAAAATAAC
GTCAACAACAAAATTAACTTTTAATCAAATCAGTAATATTACAATAATGA
TGATATCAAACAGAACAACAAATGGAACTGGATTTCCTTTGGACAGCAAT
GTTAACGATTTTATTGCATGTACTTTCTTTACGTCCTCTATAATTGGCAT
TTTACTACTGATTATCAACTCATGCATTTGTGGGAACAGAAAGGATGGAA
GAAATGTGGCGTTCATTTTGGTTGggactttttcctttttaagTTTATCA
ACCAGCCAAGACGAAATAATATATTTCGCAGTAGTTGCTTCTTTTTTATC
GATAGCGATCATTTATACGTTGATTGGTTACTTCatatttttcactgaaa
atgAAGAACTTCCAAAAGAAATGCATGATTCACATTTGCGTCCTTTTATT
CTTGGAATCACTGCAACCGTCGTTGTACAGGAATGCTTGTATTTCATTGG
ATCACTCTGCGATAAAGGAAATGGAAGAAAAAGTGCTATCTTCATATTAG
CTGCTATTCAAAAGCTTGTGCAAATCGGCatctattatttcaaattaaTC
GATTCTGTCCCCAAAAGACAATATGGTGCGTCTTTGTACTATAAAATCTT
TGCCTtgttcaatttcattttttggatAGAATCGATCAAAGTGACCAAAA
ACCAGCAACAGGAGAAGTTTATGGAGGATATGCTTCATGGTCTTTACACA
ATTTTTGCCAGAACCTACACAGCTTTGATTGTTGACTATCGCTTGATTTG
TTGTATCTTGTTTGTGGAGCATGCTGCAGAGATTAATATAATGATAGCAC
GTGGCGAGAGTTATGAAAGAATGGAAGGAAACCAAAGTGAACAAGAACAA
GGAGTCAAAGTGGTTCATCAATGTTTTAATGATTATCGAGAGTTCACCAG
AGCTATCAAGAATATAAATGGTCTAGGAATGACACTTGGCTTGGTCATTG
TATTTCTACAGATCTTAAATATGTTTGTTTACTTTGAAGGAAAGGAGAGC
ATTGTGGGTCCATGGGGCAACATTGTCGGTATCTTAGCTGTTTTGTCAAT
CTTTATCGCTGGTGGATTCCTACTTTGTCAGATCAGCTCGATAGATATTA
CCGAAGAAGGGGACCATGAAGATGTGGGCATTGATTATCTCATGGTTGTA
ATGGGTCTCGTCAGTGTCATGTTCTGGACTGCAAATTCAATATCAACTAT
AGTGTGGTCGATCGAGGGAAACGCTACAGACCAAAAACAACCGTATTTAG
TTTGGACaacgggaaaagtttttttctttccgTTTGTACAACTCTTCCAA
ATCTATATCTTTCGGAAAATTCGTTTATGTTATGCCAAAAACAAAACGTT
TTTAATGATGAAAAAGTCCTACTTTTTAATTCCTTTTTTAATGCTCAGTT
CGCTGGCTTTGCTTGCCAATCTTATTATCTGTGAATACAGAGATTATGTT
GAGGAGTTGATCGAAGAGGCACATTATGTATTTGTGACAGAAATATTGCT
TGCGGTTGGTGCACCGATGGGTATTGCTTTTTCATGCCACATTGTCCTCC
ACTTCTACACCATTTACCACCAGAtgagaaaatgtaaacatgATTTCGAA
CGTCAAAATCGACCCGTCGAACCCGTCGAACCCGTCGCATCCGTCGTACG
GGGTCTTTtagattctgatagcgctcaaaATTATACCAACGCCTAGATCA
GTGAAATCAAAATGTTGTGCCAGTGGCTCTGGACAGAAGCACAACGCCCA
CAAAACACCCGGCAAAGGGAAACGAACTGTACTGATTTAGGTAGCCATAT
ACTGGAGTGGAGGGtaaattttctttgttcaagCCTGCAGAATATGTGAC
CATTAATTGTTTCTAAATCGAAAAGACTAATACTTGATAGAAGCCCGTCC
AAAGCAGCACTCAATTTGAAATAATCATTTTAATAGTAAAATGGTAAATG
TCTTTAAGTTTTACTAATATGTTTACTACATAGACTTAACTG Run BLAST on NCBI protein sequence of TCONS_00000847-protein >TCONS_00000847-protein ID=TCONS_00000847-protein|Name=TCONS_00000847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp
MMISNRTTNGTGFPLDSNVNDFIACTFFTSSIIGILLLIINSCICGNRKD
GRNVAFILVGTFSFLSLSTSQDEIIYFAVVASFLSIAIIYTLIGYFIFFT
ENEELPKEMHDSHLRPFILGITATVVVQECLYFIGSLCDKGNGRKSAIFI
LAAIQKLVQIGIYYFKLIDSVPKRQYGASLYYKIFALFNFIFWIESIKVT
KNQQQEKFMEDMLHGLYTIFARTYTALIVDYRLICCILFVEHAAEINIMI
ARGESYERMEGNQSEQEQGVKVVHQCFNDYREFTRAIKNINGLGMTLGLV
IVFLQILNMFVYFEGKESIVGPWGNIVGILAVLSIFIAGGFLLCQISSID
ITEEGDHEDVGIDYLMVVMGLVSVMFWTANSISTIVWSIEGNATDQKQPY
LVWTTGKVFFFPFVQLFQIYIFRKIRLCYAKNKTFLMMKKSYFLIPFLML
SSLALLANLIICEYRDYVEELIEEAHYVFVTEILLAVGAPMGIAFSCHIV
LHFYTIYHQMRKCKHDFERQNRPVEPVEPVASVVRGLLDSDSAQNYTNA Run BLAST on NCBI transcript from alignment at sc0000005:1015387..1018581- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000847 ID=TCONS_00000847|Name=TCONS_00000847|organism=Clytia hemisphaerica|type=transcript|length=3195bp|location=Sequence derived from alignment at sc0000005:1015387..1018581- (Clytia hemisphaerica)
ATTTGATCATTTTTTAAGCCAGCTTCAACATCCAAAGGACTTTTAGTGCG
TTCAGCTACAGCTTAACCGGCGTGCGACGCCGGGTACCGGCTAGTATACT
TTAATTCGTTTGATTTATTTTGTATTACAGTGTAACTTAAATAAAATAAC
GTCAACAACAAAATTAACTTTTAATCAAATCAGTAATATTACAATAATGA
TGATATCAAACAGAACAACAAATGGAACTGGATTTCCTTTGGACAGCAAT
GTTAACGATTTTATTGCATGTACTTTCTTTACGTCCTCTATAATTGGCAT
TTTACTACTGATTATCAACTCATGCATTTGTGGGAACAGAAAGGATGGAA
GAAATGTGGCGTTCATTTTGGTTGGGACTTTTTCCTTTTTAAGTTTATCA
ACCAGCCAAGACGAAATAATATATTTCGCAGTAGTTGCTTCTTTTTTATC
GATAGCGATCATTTATACGTTGATTGGTTACTTCATATTTTTCACTGAAA
ATGAAGAACTTCCAAAAGAAATGCATGATTCACATTTGCGTCCTTTTATT
CTTGGAATCACTGCAACCGTCGTTGTACAGGAATGCTTGTATTTCATTGG
ATCACTCTGCGATAAAGGAAATGGAAGAAAAAGTGCTATCTTCATATTAG
CTGCTATTCAAAAGCTTGTGCAAATCGGCATCTATTATTTCAAATTAATC
GATTCTGTCCCCAAAAGACAATATGGTGCGTCTTTGTACTATAAAATCTT
TGCCTTGTTCAATTTCATTTTTTGGATAGAATCGATCAAAGTGACCAAAA
ACCAGCAACAGGAGAAGTTTATGGAGGATATGCTTCATGGTCTTTACACA
ATTTTTGCCAGAACCTACACAGCTTTGATTGTTGACTATCGCTTGATTTG
TTGTATCTTGTTTGTGGAGCATGCTGCAGAGATTAATATAATGATAGCAC
GTGGCGAGAGTTATGAAAGAATGGAAGGAAACCAAAGTGAACAAGAACAA
GGAGTCAAAGTGGTTCATCAATGTTTTAATGATTATCGAGAGTTCACCAG
AGCTATCAAGAATATAAATGGTCTAGGAATGACACTTGGCTTGGTCATTG
TATTTCTACAGATCTTAAATATGTTTGTTTACTTTGAAGGAAAGGAGAGC
ATTGTGGGTCCATGGGGCAACATTGTCGGTATCTTAGCTGTTTTGTCAAT
CTTTATCGCTGGTGGATTCCTACTTTGTCAGGTATGCTTGCAATTATTTG
CAAATGTCTTTGTTAAACAAGAATAGGTGAAAGAAGATCTACACAATCTT
TACTCTACAATACTACAATGGTTTATTAACATTCCAAAGTTTTGACCTGT
GAATGACCTGAGGGTTAAGTTATTTGCTTACTTTTACTTATACTCTTAGG
TGCCAAATAAACGGCCCCCCCCGCTTGTTATTTTTTCGATTTTTTTCCAA
CCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAACAATTCCCAGCTACCAAAAGGAAAGTTCCTT
GTTTTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACCCTTCTTAGGGT
TTTTTTAAGGTCCATTTTCCAACCCCCCCGGTAATTAGGTCCCCCCCGTT
TATTTAATTTGAAAATTTTTTCCAAAAAAAAATTTGAAATGATTTTAAAC
TTTATGACTCGTGATCAAATCATAAAAGATTTTTGACTTCATCAAATTTC
GAAAACTTTAGTCATCTCCAGCATTGATTTTAATAAAAAATCTCAGTGGA
AAATAAAAAAACCGGCAATTATGTTTAAGAAAAACCTTCTATCTTTCAAA
ATCATCAATCAGAGAGAGAGTCTGAGTATCTTTATTGGTTCGACTGTGAG
ACACATTTTTATAAACCATACATTTGGACTTTTATGCAACGTGGAAATTT
TGTGATGACGATCAATTTTTTTTTTCTTCCTGGAAGTTTATGTCGTGATG
GAGAACACCTGTCTATTTTCATAGTCATAGCTCTTCTAGATAAGAAATAA
TCGAGGATGGTAGATTCTACCCACTTCGATCTTCAAACGAAAGCGGGTTT
TCATCGAATAAGGGATCGAATGAAAGAGCTTAGAATTAGAGACACTCAAA
TGTAAAACTTTTTTTAATACATTTATTTATCTAGATCAGCTCGATAGATA
TTACCGAAGAAGGGGACCATGAAGATGTGGGCATTGATTATCTCATGGTT
GTAATGGGTCTCGTCAGTGTCATGTTCTGGACTGCAAATTCAATATCAAC
TATAGTGTGGTCGATCGAGGGAAACGCTACAGACCAAAAACAACCGTATT
TAGTTTGGACAACGGGAAAAGTTTTTTTCTTTCCGTTTGTACAACTCTTC
CAAATCTATATCTTTCGGAAAATTCGTTTATGTTATGCCAAAAACAAAAC
GTTTTTAATGATGAAAAAGTCCTACTTTTTAATTCCTTTTTTAATGCTCA
GTTCGCTGGCTTTGCTTGCCAATCTTATTATCTGTGAATACAGAGATTAT
GTTGAGGAGTTGATCGAAGAGGCACATTATGTATTTGTGACAGAAATATT
GCTTGCGGTTGGTGCACCGATGGGTATTGCTTTTTCATGCCACATTGTCC
TCCACTTCTACACCATTTACCACCAGATGAGAAAATGTAAACATGATTTC
GAACGTCAAAATCGACCCGTCGAACCCGTCGAACCCGTCGCATCCGTCGT
ACGGGGTCTTTTAGATTCTGATAGCGCTCAAAATTATACCAACGCCTAGA
TCAGTGAAATCAAAATGTTGTGCCAGTGGCTCTGGACAGAAGCACAACGC
CCACAAAACACCCGGCAAAGGGAAACGAACTGTACTGATTTAGGTAGCCA
TATACTGGAGTGGAGGGTAAATTTTCTTTGTTCAAGCCTGCAGAATATGT
GACCATTAATTGTTTCTAAATCGAAAAGACTAATACTTGATAGAAGCCCG
TCCAAAGCAGCACTCAATTTGAAATAATCATTTTAATAGTAAAATGGTAA
ATGTCTTTAAGTTTTACTAATATGTTTACTACATAGACTTAACTG Coding sequence (CDS) from alignment at sc0000005:1015387..1018581- >TCONS_00000847 ID=TCONS_00000847|Name=TCONS_00000847|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at sc0000005:1015387..1018581- (Clytia hemisphaerica)
ATCAGCTCGATAGATATTACCGAAGAAGGGGACCATGAAGATGTGGGCAT
TGATTATCTCATGGTTGTAATGGGTCTCGTCAGTGTCATGTTCTGGACTG
CAAATTCAATATCAACTATAGTGTGGTCGATCGAGGGAAACGCTACAGAC
CAAAAACAACCGTATTTAGTTTGGACAACGGGAAAAGTTTTTTTCTTTCC
GTTTGTACAACTCTTCCAAATCTATATCTTTCGGAAAATTCGTTTATGTT
ATGCCAAAAACAAAACGTTTTTAATGATGAAAAAGTCCTACTTTTTAATT
CCTTTTTTAATGCTCAGTTCGCTGGCTTTGCTTGCCAATCTTATTATCTG
TGAATACAGAGATTATGTTGAGGAGTTGATCGAAGAGGCACATTATGTAT
TTGTGACAGAAATATTGCTTGCGGTTGGTGCACCGATGGGTATTGCTTTT
TCATGCCACATTGTCCTCCACTTCTACACCATTTACCACCAGATGAGAAA
ATGTAAACATGATTTCGAACGTCAAAATCGACCCGTCGAACCCGTCGAAC
CCGTCGCATCCGTCGTACGGGGTCTTTTAGATTCTGATAGCGCTCAAAAT
TATACCAACGCCTAGATGATGATATCAAACAGAACAACAAATGGAACTGG
ATTTCCTTTGGACAGCAATGTTAACGATTTTATTGCATGTACTTTCTTTA
CGTCCTCTATAATTGGCATTTTACTACTGATTATCAACTCATGCATTTGT
GGGAACAGAAAGGATGGAAGAAATGTGGCGTTCATTTTGGTTGGGACTTT
TTCCTTTTTAAGTTTATCAACCAGCCAAGACGAAATAATATATTTCGCAG
TAGTTGCTTCTTTTTTATCGATAGCGATCATTTATACGTTGATTGGTTAC
TTCATATTTTTCACTGAAAATGAAGAACTTCCAAAAGAAATGCATGATTC
ACATTTGCGTCCTTTTATTCTTGGAATCACTGCAACCGTCGTTGTACAGG
AATGCTTGTATTTCATTGGATCACTCTGCGATAAAGGAAATGGAAGAAAA
AGTGCTATCTTCATATTAGCTGCTATTCAAAAGCTTGTGCAAATCGGCAT
CTATTATTTCAAATTAATCGATTCTGTCCCCAAAAGACAATATGGTGCGT
CTTTGTACTATAAAATCTTTGCCTTGTTCAATTTCATTTTTTGGATAGAA
TCGATCAAAGTGACCAAAAACCAGCAACAGGAGAAGTTTATGGAGGATAT
GCTTCATGGTCTTTACACAATTTTTGCCAGAACCTACACAGCTTTGATTG
TTGACTATCGCTTGATTTGTTGTATCTTGTTTGTGGAGCATGCTGCAGAG
ATTAATATAATGATAGCACGTGGCGAGAGTTATGAAAGAATGGAAGGAAA
CCAAAGTGAACAAGAACAAGGAGTCAAAGTGGTTCATCAATGTTTTAATG
ATTATCGAGAGTTCACCAGAGCTATCAAGAATATAAATGGTCTAGGAATG
ACACTTGGCTTGGTCATTGTATTTCTACAGATCTTAAATATGTTTGTTTA
CTTTGAAGGAAAGGAGAGCATTGTGGGTCCATGGGGCAACATTGTCGGTA
TCTTAGCTGTTTTGTCAATCTTTATCGCTGGTGGATTCCTACTTTGTCAG
ATCAGCTCGATAGATATTACCGAAGAAGGGGACCATGAAGATGTGGGCAT
TGATTATCTCATGGTTGTAATGGGTCTCGTCAGTGTCATGTTCTGGACTG
CAAATTCAATATCAACTATAGTGTGGTCGATCGAGGGAAACGCTACAGAC
CAAAAACAACCGTATTTAGTTTGGACAACGGGAAAAGTTTTTTTCTTTCC
GTTTGTACAACTCTTCCAAATCTATATCTTTCGGAAAATTCGTTTATGTT
ATGCCAAAAACAAAACGTTTTTAATGATGAAAAAGTCCTACTTTTTAATT
CCTTTTTTAATGCTCAGTTCGCTGGCTTTGCTTGCCAATCTTATTATCTG
TGAATACAGAGATTATGTTGAGGAGTTGATCGAAGAGGCACATTATGTAT
TTGTGACAGAAATATTGCTTGCGGTTGGTGCACCGATGGGTATTGCTTTT
TCATGCCACATTGTCCTCCACTTCTACACCATTTACCACCAGATGAGAAA
ATGTAAACATGATTTCGAACGTCAAAATCGACCCGTCGAACCCGTCGAAC
CCGTCGCATCCGTCGTACGGGGTCTTTTAGATTCTGATAGCGCTCAAAAT
TATACCAACGCCTAGATGATGATATCAAACAGAACAACAAATGGAACTGG
ATTTCCTTTGGACAGCAATGTTAACGATTTTATTGCATGTACTTTCTTTA
CGTCCTCTATAATTGGCATTTTACTACTGATTATCAACTCATGCATTTGT
GGGAACAGAAAGGATGGAAGAAATGTGGCGTTCATTTTGGTTGGGACTTT
TTCCTTTTTAAGTTTATCAACCAGCCAAGACGAAATAATATATTTCGCAG
TAGTTGCTTCTTTTTTATCGATAGCGATCATTTATACGTTGATTGGTTAC
TTCATATTTTTCACTGAAAATGAAGAACTTCCAAAAGAAATGCATGATTC
ACATTTGCGTCCTTTTATTCTTGGAATCACTGCAACCGTCGTTGTACAGG
AATGCTTGTATTTCATTGGATCACTCTGCGATAAAGGAAATGGAAGAAAA
AGTGCTATCTTCATATTAGCTGCTATTCAAAAGCTTGTGCAAATCGGCAT
CTATTATTTCAAATTAATCGATTCTGTCCCCAAAAGACAATATGGTGCGT
CTTTGTACTATAAAATCTTTGCCTTGTTCAATTTCATTTTTTGGATAGAA
TCGATCAAAGTGACCAAAAACCAGCAACAGGAGAAGTTTATGGAGGATAT
GCTTCATGGTCTTTACACAATTTTTGCCAGAACCTACACAGCTTTGATTG
TTGACTATCGCTTGATTTGTTGTATCTTGTTTGTGGAGCATGCTGCAGAG
ATTAATATAATGATAGCACGTGGCGAGAGTTATGAAAGAATGGAAGGAAA
CCAAAGTGAACAAGAACAAGGAGTCAAAGTGGTTCATCAATGTTTTAATG
ATTATCGAGAGTTCACCAGAGCTATCAAGAATATAAATGGTCTAGGAATG
ACACTTGGCTTGGTCATTGTATTTCTACAGATCTTAAATATGTTTGTTTA
CTTTGAAGGAAAGGAGAGCATTGTGGGTCCATGGGGCAACATTGTCGGTA
TCTTAGCTGTTTTGTCAATCTTTATCGCTGGTGGATTCCTACTTTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000847-exon-sc0000005-1575043694:1017351..1018581 | TCONS_00000847-exon-sc0000005-1575043694:1017351..1018581 | Clytia hemisphaerica | exon |
| TCONS_00000847-exon-sc0000005-1575043694:1015387..1016297 | TCONS_00000847-exon-sc0000005-1575043694:1015387..1016297 | Clytia hemisphaerica | exon |
| TCONS_00000847-exon-sc0000005-1510915933:1017351..1018581 | TCONS_00000847-exon-sc0000005-1510915933:1017351..1018581 | Clytia hemisphaerica | exon |
| TCONS_00000847-exon-sc0000005-1510915933:1015387..1016297 | TCONS_00000847-exon-sc0000005-1510915933:1015387..1016297 | Clytia hemisphaerica | exon |
| TCONS_00000847-exon-sc0000005-1491911889:1017351..1018581 | TCONS_00000847-exon-sc0000005-1491911889:1017351..1018581 | Clytia hemisphaerica | exon |
| TCONS_00000847-exon-sc0000005-1491911889:1015387..1016297 | TCONS_00000847-exon-sc0000005-1491911889:1015387..1016297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1015387..1018581 - |
Blast
The following BLAST results are available for this feature:
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