TCONS_00000847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000847
Unique NameTCONS_00000847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000847 ID=TCONS_00000847|Name=TCONS_00000847|organism=Clytia hemisphaerica|type=transcript|length=2142bp
atttgatcattttttaagccagcttcaacatccaaaggacttttagtgcg
ttcagctacagcttaaccggcgtgcgacgccgggtaccggctagtatacT
TTAATTCgtttgatttattttgtatTACAGTGTAACTTAAATAAAATAAC
GTCAACAACAAAATTAACTTTTAATCAAATCAGTAATATTACAATAATGA
TGATATCAAACAGAACAACAAATGGAACTGGATTTCCTTTGGACAGCAAT
GTTAACGATTTTATTGCATGTACTTTCTTTACGTCCTCTATAATTGGCAT
TTTACTACTGATTATCAACTCATGCATTTGTGGGAACAGAAAGGATGGAA
GAAATGTGGCGTTCATTTTGGTTGggactttttcctttttaagTTTATCA
ACCAGCCAAGACGAAATAATATATTTCGCAGTAGTTGCTTCTTTTTTATC
GATAGCGATCATTTATACGTTGATTGGTTACTTCatatttttcactgaaa
atgAAGAACTTCCAAAAGAAATGCATGATTCACATTTGCGTCCTTTTATT
CTTGGAATCACTGCAACCGTCGTTGTACAGGAATGCTTGTATTTCATTGG
ATCACTCTGCGATAAAGGAAATGGAAGAAAAAGTGCTATCTTCATATTAG
CTGCTATTCAAAAGCTTGTGCAAATCGGCatctattatttcaaattaaTC
GATTCTGTCCCCAAAAGACAATATGGTGCGTCTTTGTACTATAAAATCTT
TGCCTtgttcaatttcattttttggatAGAATCGATCAAAGTGACCAAAA
ACCAGCAACAGGAGAAGTTTATGGAGGATATGCTTCATGGTCTTTACACA
ATTTTTGCCAGAACCTACACAGCTTTGATTGTTGACTATCGCTTGATTTG
TTGTATCTTGTTTGTGGAGCATGCTGCAGAGATTAATATAATGATAGCAC
GTGGCGAGAGTTATGAAAGAATGGAAGGAAACCAAAGTGAACAAGAACAA
GGAGTCAAAGTGGTTCATCAATGTTTTAATGATTATCGAGAGTTCACCAG
AGCTATCAAGAATATAAATGGTCTAGGAATGACACTTGGCTTGGTCATTG
TATTTCTACAGATCTTAAATATGTTTGTTTACTTTGAAGGAAAGGAGAGC
ATTGTGGGTCCATGGGGCAACATTGTCGGTATCTTAGCTGTTTTGTCAAT
CTTTATCGCTGGTGGATTCCTACTTTGTCAGATCAGCTCGATAGATATTA
CCGAAGAAGGGGACCATGAAGATGTGGGCATTGATTATCTCATGGTTGTA
ATGGGTCTCGTCAGTGTCATGTTCTGGACTGCAAATTCAATATCAACTAT
AGTGTGGTCGATCGAGGGAAACGCTACAGACCAAAAACAACCGTATTTAG
TTTGGACaacgggaaaagtttttttctttccgTTTGTACAACTCTTCCAA
ATCTATATCTTTCGGAAAATTCGTTTATGTTATGCCAAAAACAAAACGTT
TTTAATGATGAAAAAGTCCTACTTTTTAATTCCTTTTTTAATGCTCAGTT
CGCTGGCTTTGCTTGCCAATCTTATTATCTGTGAATACAGAGATTATGTT
GAGGAGTTGATCGAAGAGGCACATTATGTATTTGTGACAGAAATATTGCT
TGCGGTTGGTGCACCGATGGGTATTGCTTTTTCATGCCACATTGTCCTCC
ACTTCTACACCATTTACCACCAGAtgagaaaatgtaaacatgATTTCGAA
CGTCAAAATCGACCCGTCGAACCCGTCGAACCCGTCGCATCCGTCGTACG
GGGTCTTTtagattctgatagcgctcaaaATTATACCAACGCCTAGATCA
GTGAAATCAAAATGTTGTGCCAGTGGCTCTGGACAGAAGCACAACGCCCA
CAAAACACCCGGCAAAGGGAAACGAACTGTACTGATTTAGGTAGCCATAT
ACTGGAGTGGAGGGtaaattttctttgttcaagCCTGCAGAATATGTGAC
CATTAATTGTTTCTAAATCGAAAAGACTAATACTTGATAGAAGCCCGTCC
AAAGCAGCACTCAATTTGAAATAATCATTTTAATAGTAAAATGGTAAATG
TCTTTAAGTTTTACTAATATGTTTACTACATAGACTTAACTG
Run BLAST on NCBI

protein sequence of TCONS_00000847-protein

>TCONS_00000847-protein ID=TCONS_00000847-protein|Name=TCONS_00000847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp
MMISNRTTNGTGFPLDSNVNDFIACTFFTSSIIGILLLIINSCICGNRKD
GRNVAFILVGTFSFLSLSTSQDEIIYFAVVASFLSIAIIYTLIGYFIFFT
ENEELPKEMHDSHLRPFILGITATVVVQECLYFIGSLCDKGNGRKSAIFI
LAAIQKLVQIGIYYFKLIDSVPKRQYGASLYYKIFALFNFIFWIESIKVT
KNQQQEKFMEDMLHGLYTIFARTYTALIVDYRLICCILFVEHAAEINIMI
ARGESYERMEGNQSEQEQGVKVVHQCFNDYREFTRAIKNINGLGMTLGLV
IVFLQILNMFVYFEGKESIVGPWGNIVGILAVLSIFIAGGFLLCQISSID
ITEEGDHEDVGIDYLMVVMGLVSVMFWTANSISTIVWSIEGNATDQKQPY
LVWTTGKVFFFPFVQLFQIYIFRKIRLCYAKNKTFLMMKKSYFLIPFLML
SSLALLANLIICEYRDYVEELIEEAHYVFVTEILLAVGAPMGIAFSCHIV
LHFYTIYHQMRKCKHDFERQNRPVEPVEPVASVVRGLLDSDSAQNYTNA
Run BLAST on NCBI

transcript from alignment at sc0000005:1015387..1018581-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000847 ID=TCONS_00000847|Name=TCONS_00000847|organism=Clytia hemisphaerica|type=transcript|length=3195bp|location=Sequence derived from alignment at sc0000005:1015387..1018581- (Clytia hemisphaerica)
ATTTGATCATTTTTTAAGCCAGCTTCAACATCCAAAGGACTTTTAGTGCG TTCAGCTACAGCTTAACCGGCGTGCGACGCCGGGTACCGGCTAGTATACT TTAATTCGTTTGATTTATTTTGTATTACAGTGTAACTTAAATAAAATAAC GTCAACAACAAAATTAACTTTTAATCAAATCAGTAATATTACAATAATGA TGATATCAAACAGAACAACAAATGGAACTGGATTTCCTTTGGACAGCAAT GTTAACGATTTTATTGCATGTACTTTCTTTACGTCCTCTATAATTGGCAT TTTACTACTGATTATCAACTCATGCATTTGTGGGAACAGAAAGGATGGAA GAAATGTGGCGTTCATTTTGGTTGGGACTTTTTCCTTTTTAAGTTTATCA ACCAGCCAAGACGAAATAATATATTTCGCAGTAGTTGCTTCTTTTTTATC GATAGCGATCATTTATACGTTGATTGGTTACTTCATATTTTTCACTGAAA ATGAAGAACTTCCAAAAGAAATGCATGATTCACATTTGCGTCCTTTTATT CTTGGAATCACTGCAACCGTCGTTGTACAGGAATGCTTGTATTTCATTGG ATCACTCTGCGATAAAGGAAATGGAAGAAAAAGTGCTATCTTCATATTAG CTGCTATTCAAAAGCTTGTGCAAATCGGCATCTATTATTTCAAATTAATC GATTCTGTCCCCAAAAGACAATATGGTGCGTCTTTGTACTATAAAATCTT TGCCTTGTTCAATTTCATTTTTTGGATAGAATCGATCAAAGTGACCAAAA ACCAGCAACAGGAGAAGTTTATGGAGGATATGCTTCATGGTCTTTACACA ATTTTTGCCAGAACCTACACAGCTTTGATTGTTGACTATCGCTTGATTTG TTGTATCTTGTTTGTGGAGCATGCTGCAGAGATTAATATAATGATAGCAC GTGGCGAGAGTTATGAAAGAATGGAAGGAAACCAAAGTGAACAAGAACAA GGAGTCAAAGTGGTTCATCAATGTTTTAATGATTATCGAGAGTTCACCAG AGCTATCAAGAATATAAATGGTCTAGGAATGACACTTGGCTTGGTCATTG TATTTCTACAGATCTTAAATATGTTTGTTTACTTTGAAGGAAAGGAGAGC ATTGTGGGTCCATGGGGCAACATTGTCGGTATCTTAGCTGTTTTGTCAAT CTTTATCGCTGGTGGATTCCTACTTTGTCAGGTATGCTTGCAATTATTTG CAAATGTCTTTGTTAAACAAGAATAGGTGAAAGAAGATCTACACAATCTT TACTCTACAATACTACAATGGTTTATTAACATTCCAAAGTTTTGACCTGT GAATGACCTGAGGGTTAAGTTATTTGCTTACTTTTACTTATACTCTTAGG TGCCAAATAAACGGCCCCCCCCGCTTGTTATTTTTTCGATTTTTTTCCAA CCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNAAACAATTCCCAGCTACCAAAAGGAAAGTTCCTT GTTTTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACCCTTCTTAGGGT TTTTTTAAGGTCCATTTTCCAACCCCCCCGGTAATTAGGTCCCCCCCGTT TATTTAATTTGAAAATTTTTTCCAAAAAAAAATTTGAAATGATTTTAAAC TTTATGACTCGTGATCAAATCATAAAAGATTTTTGACTTCATCAAATTTC GAAAACTTTAGTCATCTCCAGCATTGATTTTAATAAAAAATCTCAGTGGA AAATAAAAAAACCGGCAATTATGTTTAAGAAAAACCTTCTATCTTTCAAA ATCATCAATCAGAGAGAGAGTCTGAGTATCTTTATTGGTTCGACTGTGAG ACACATTTTTATAAACCATACATTTGGACTTTTATGCAACGTGGAAATTT TGTGATGACGATCAATTTTTTTTTTCTTCCTGGAAGTTTATGTCGTGATG GAGAACACCTGTCTATTTTCATAGTCATAGCTCTTCTAGATAAGAAATAA TCGAGGATGGTAGATTCTACCCACTTCGATCTTCAAACGAAAGCGGGTTT TCATCGAATAAGGGATCGAATGAAAGAGCTTAGAATTAGAGACACTCAAA TGTAAAACTTTTTTTAATACATTTATTTATCTAGATCAGCTCGATAGATA TTACCGAAGAAGGGGACCATGAAGATGTGGGCATTGATTATCTCATGGTT GTAATGGGTCTCGTCAGTGTCATGTTCTGGACTGCAAATTCAATATCAAC TATAGTGTGGTCGATCGAGGGAAACGCTACAGACCAAAAACAACCGTATT TAGTTTGGACAACGGGAAAAGTTTTTTTCTTTCCGTTTGTACAACTCTTC CAAATCTATATCTTTCGGAAAATTCGTTTATGTTATGCCAAAAACAAAAC GTTTTTAATGATGAAAAAGTCCTACTTTTTAATTCCTTTTTTAATGCTCA GTTCGCTGGCTTTGCTTGCCAATCTTATTATCTGTGAATACAGAGATTAT GTTGAGGAGTTGATCGAAGAGGCACATTATGTATTTGTGACAGAAATATT GCTTGCGGTTGGTGCACCGATGGGTATTGCTTTTTCATGCCACATTGTCC TCCACTTCTACACCATTTACCACCAGATGAGAAAATGTAAACATGATTTC GAACGTCAAAATCGACCCGTCGAACCCGTCGAACCCGTCGCATCCGTCGT ACGGGGTCTTTTAGATTCTGATAGCGCTCAAAATTATACCAACGCCTAGA TCAGTGAAATCAAAATGTTGTGCCAGTGGCTCTGGACAGAAGCACAACGC CCACAAAACACCCGGCAAAGGGAAACGAACTGTACTGATTTAGGTAGCCA TATACTGGAGTGGAGGGTAAATTTTCTTTGTTCAAGCCTGCAGAATATGT GACCATTAATTGTTTCTAAATCGAAAAGACTAATACTTGATAGAAGCCCG TCCAAAGCAGCACTCAATTTGAAATAATCATTTTAATAGTAAAATGGTAA ATGTCTTTAAGTTTTACTAATATGTTTACTACATAGACTTAACTG

Coding sequence (CDS) from alignment at sc0000005:1015387..1018581-

>TCONS_00000847 ID=TCONS_00000847|Name=TCONS_00000847|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at sc0000005:1015387..1018581- (Clytia hemisphaerica)
ATCAGCTCGATAGATATTACCGAAGAAGGGGACCATGAAGATGTGGGCAT
TGATTATCTCATGGTTGTAATGGGTCTCGTCAGTGTCATGTTCTGGACTG
CAAATTCAATATCAACTATAGTGTGGTCGATCGAGGGAAACGCTACAGAC
CAAAAACAACCGTATTTAGTTTGGACAACGGGAAAAGTTTTTTTCTTTCC
GTTTGTACAACTCTTCCAAATCTATATCTTTCGGAAAATTCGTTTATGTT
ATGCCAAAAACAAAACGTTTTTAATGATGAAAAAGTCCTACTTTTTAATT
CCTTTTTTAATGCTCAGTTCGCTGGCTTTGCTTGCCAATCTTATTATCTG
TGAATACAGAGATTATGTTGAGGAGTTGATCGAAGAGGCACATTATGTAT
TTGTGACAGAAATATTGCTTGCGGTTGGTGCACCGATGGGTATTGCTTTT
TCATGCCACATTGTCCTCCACTTCTACACCATTTACCACCAGATGAGAAA
ATGTAAACATGATTTCGAACGTCAAAATCGACCCGTCGAACCCGTCGAAC
CCGTCGCATCCGTCGTACGGGGTCTTTTAGATTCTGATAGCGCTCAAAAT
TATACCAACGCCTAGATGATGATATCAAACAGAACAACAAATGGAACTGG
ATTTCCTTTGGACAGCAATGTTAACGATTTTATTGCATGTACTTTCTTTA
CGTCCTCTATAATTGGCATTTTACTACTGATTATCAACTCATGCATTTGT
GGGAACAGAAAGGATGGAAGAAATGTGGCGTTCATTTTGGTTGGGACTTT
TTCCTTTTTAAGTTTATCAACCAGCCAAGACGAAATAATATATTTCGCAG
TAGTTGCTTCTTTTTTATCGATAGCGATCATTTATACGTTGATTGGTTAC
TTCATATTTTTCACTGAAAATGAAGAACTTCCAAAAGAAATGCATGATTC
ACATTTGCGTCCTTTTATTCTTGGAATCACTGCAACCGTCGTTGTACAGG
AATGCTTGTATTTCATTGGATCACTCTGCGATAAAGGAAATGGAAGAAAA
AGTGCTATCTTCATATTAGCTGCTATTCAAAAGCTTGTGCAAATCGGCAT
CTATTATTTCAAATTAATCGATTCTGTCCCCAAAAGACAATATGGTGCGT
CTTTGTACTATAAAATCTTTGCCTTGTTCAATTTCATTTTTTGGATAGAA
TCGATCAAAGTGACCAAAAACCAGCAACAGGAGAAGTTTATGGAGGATAT
GCTTCATGGTCTTTACACAATTTTTGCCAGAACCTACACAGCTTTGATTG
TTGACTATCGCTTGATTTGTTGTATCTTGTTTGTGGAGCATGCTGCAGAG
ATTAATATAATGATAGCACGTGGCGAGAGTTATGAAAGAATGGAAGGAAA
CCAAAGTGAACAAGAACAAGGAGTCAAAGTGGTTCATCAATGTTTTAATG
ATTATCGAGAGTTCACCAGAGCTATCAAGAATATAAATGGTCTAGGAATG
ACACTTGGCTTGGTCATTGTATTTCTACAGATCTTAAATATGTTTGTTTA
CTTTGAAGGAAAGGAGAGCATTGTGGGTCCATGGGGCAACATTGTCGGTA
TCTTAGCTGTTTTGTCAATCTTTATCGCTGGTGGATTCCTACTTTGTCAG
ATCAGCTCGATAGATATTACCGAAGAAGGGGACCATGAAGATGTGGGCAT
TGATTATCTCATGGTTGTAATGGGTCTCGTCAGTGTCATGTTCTGGACTG
CAAATTCAATATCAACTATAGTGTGGTCGATCGAGGGAAACGCTACAGAC
CAAAAACAACCGTATTTAGTTTGGACAACGGGAAAAGTTTTTTTCTTTCC
GTTTGTACAACTCTTCCAAATCTATATCTTTCGGAAAATTCGTTTATGTT
ATGCCAAAAACAAAACGTTTTTAATGATGAAAAAGTCCTACTTTTTAATT
CCTTTTTTAATGCTCAGTTCGCTGGCTTTGCTTGCCAATCTTATTATCTG
TGAATACAGAGATTATGTTGAGGAGTTGATCGAAGAGGCACATTATGTAT
TTGTGACAGAAATATTGCTTGCGGTTGGTGCACCGATGGGTATTGCTTTT
TCATGCCACATTGTCCTCCACTTCTACACCATTTACCACCAGATGAGAAA
ATGTAAACATGATTTCGAACGTCAAAATCGACCCGTCGAACCCGTCGAAC
CCGTCGCATCCGTCGTACGGGGTCTTTTAGATTCTGATAGCGCTCAAAAT
TATACCAACGCCTAGATGATGATATCAAACAGAACAACAAATGGAACTGG
ATTTCCTTTGGACAGCAATGTTAACGATTTTATTGCATGTACTTTCTTTA
CGTCCTCTATAATTGGCATTTTACTACTGATTATCAACTCATGCATTTGT
GGGAACAGAAAGGATGGAAGAAATGTGGCGTTCATTTTGGTTGGGACTTT
TTCCTTTTTAAGTTTATCAACCAGCCAAGACGAAATAATATATTTCGCAG
TAGTTGCTTCTTTTTTATCGATAGCGATCATTTATACGTTGATTGGTTAC
TTCATATTTTTCACTGAAAATGAAGAACTTCCAAAAGAAATGCATGATTC
ACATTTGCGTCCTTTTATTCTTGGAATCACTGCAACCGTCGTTGTACAGG
AATGCTTGTATTTCATTGGATCACTCTGCGATAAAGGAAATGGAAGAAAA
AGTGCTATCTTCATATTAGCTGCTATTCAAAAGCTTGTGCAAATCGGCAT
CTATTATTTCAAATTAATCGATTCTGTCCCCAAAAGACAATATGGTGCGT
CTTTGTACTATAAAATCTTTGCCTTGTTCAATTTCATTTTTTGGATAGAA
TCGATCAAAGTGACCAAAAACCAGCAACAGGAGAAGTTTATGGAGGATAT
GCTTCATGGTCTTTACACAATTTTTGCCAGAACCTACACAGCTTTGATTG
TTGACTATCGCTTGATTTGTTGTATCTTGTTTGTGGAGCATGCTGCAGAG
ATTAATATAATGATAGCACGTGGCGAGAGTTATGAAAGAATGGAAGGAAA
CCAAAGTGAACAAGAACAAGGAGTCAAAGTGGTTCATCAATGTTTTAATG
ATTATCGAGAGTTCACCAGAGCTATCAAGAATATAAATGGTCTAGGAATG
ACACTTGGCTTGGTCATTGTATTTCTACAGATCTTAAATATGTTTGTTTA
CTTTGAAGGAAAGGAGAGCATTGTGGGTCCATGGGGCAACATTGTCGGTA
TCTTAGCTGTTTTGTCAATCTTTATCGCTGGTGGATTCCTACTTTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000509XLOC_000509Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000847-proteinTCONS_00000847-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000847-exon-sc0000005-1575043694:1017351..1018581TCONS_00000847-exon-sc0000005-1575043694:1017351..1018581Clytia hemisphaericaexon
TCONS_00000847-exon-sc0000005-1575043694:1015387..1016297TCONS_00000847-exon-sc0000005-1575043694:1015387..1016297Clytia hemisphaericaexon
TCONS_00000847-exon-sc0000005-1510915933:1017351..1018581TCONS_00000847-exon-sc0000005-1510915933:1017351..1018581Clytia hemisphaericaexon
TCONS_00000847-exon-sc0000005-1510915933:1015387..1016297TCONS_00000847-exon-sc0000005-1510915933:1015387..1016297Clytia hemisphaericaexon
TCONS_00000847-exon-sc0000005-1491911889:1017351..1018581TCONS_00000847-exon-sc0000005-1491911889:1017351..1018581Clytia hemisphaericaexon
TCONS_00000847-exon-sc0000005-1491911889:1015387..1016297TCONS_00000847-exon-sc0000005-1491911889:1015387..1016297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1015387..1018581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161451 0.174572 0.293302 0.322312 0.872646 0.42403 0.86335 0.751712 0.46973 0.944833 0.608127 0.528833 2.33472 1.67814 3.66889 3.46268 0.631532 0.753385 2.16102 1.78355 0.568213 0.473373 0.0997978 0.397598 0.765399 1.55897 0.355178 0.212008 0.261195 0.183279
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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