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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000839 ID=TCONS_00000839|Name=TCONS_00000839|organism=Clytia hemisphaerica|type=transcript|length=1247bp
AATAGATTTGCAAAAACGCCCGTATGCCGCCCGGGCCAGTCCGGGCGGCC
TCCGGGCGCCTAAAAAAGGCAATTTGAAgacttgaaatattttgatgCTT
AAACATAATTATTTTAATAGTAAAACTGCATTTTAGGTAAAATTCAACAT
TTAGTCAGTCAGgtaaatccttgcatttgcacggggtCCGCTACGTTGCA
TTTGCAACGGGTCGAAATCGAAAGTAGCGCGAAAACCCGGTGTAAATACA
CTGTTtttttggaactctgtgcatttgcacggggtggaaaatcagaaaat
ttaagatttttcaatatggttttacaatcaattaacaccattctttttgt
ttagaatCAATATTAAGAAGatgaatcaaattcaataaGATGTACCAGAT
GAGACGTGTATGTTCTACATTTTCCACCGTCGTAATATCGTAATGATGAT
ACACATTCATTATCATCATTGGCGAGGGCGAGAATCCGGAAGCCAGATCC
AGTGGAGCCCCccaccccactggaaaatttagcaaagaAATCGTCGTCAG
TGGAGAAAATAACCTGAAAGTTTAACCCGCCCACTTGAAAAGAACCAAAT
GACTTTACCCTCAGTATGGTGGAAAATTGCACCgcaaaaccattcccact
gtAAACTTCGAGCTGGAATATAGAGTTTCTATCTCAATCGGGACACTACG
ATTAGATAGAAATTTCCATCTACACTGAAggaaaaagctccaccggggcg
gcATTGACAGTGGTGTGTGTGTTTGAGAGAATGAAAACAACGCCCAGAAT
GAAAGAGAAACCAAAAAGAAAGACCAACGAAGTTACACTCTatattttat
taatttgattttaatgatcaatggcctcatttttatttttggccacTTTT
TTTAATGACGTATGTATTTCGTAGCGTATATTATTTTATACATtgttaaa
tttaataaaaaagtggctcttattttcttcttcgtgACTCTCAAGCAACA
CGCTCTCCCTGAGCAGCTCATAATGATAACAATCGGTAACATTGGCGGTG
GCATACTaaataaataatgaaaattaaagttaCTATTATATGAGTGTAAA
GATCCGTGGGTACGGCAACTTCGTCcctgtgtatcccaggctttatttac
gttctTGCTGATTGaggccagagaataccctggtgtatTATCTAGCGCTC
CCAGTCAGAATCAAAACgatgataatacgcagggatcgAGGCTAGTG Run BLAST on NCBI transcript from alignment at sc0000005:902624..904188- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000839 ID=TCONS_00000839|Name=TCONS_00000839|organism=Clytia hemisphaerica|type=transcript|length=1565bp|location=Sequence derived from alignment at sc0000005:902624..904188- (Clytia hemisphaerica)
AATAGATTTGCAAAAACGCCCGTATGCCGCCCGGGCCAGTCCGGGCGGCC
TCCGGGCGCCTAAAAAAGGCAATTTGAAGACTTGAAATATTTTGATGCTT
AAACATAATTATTTTAATAGTAAAACTGCATTTTAGGTAAAATTCAACAT
TTAGTCAGTCAGGTAAATCCTTGCATTTGCACGGGGTCCGCTACGTTGCA
TTTGCAACGGGTCGAAATCGAAAGTAGCGCGAAAACCCGGTGTAAATACA
CTGTTTTTTTGGAACTCTGTGCATTTGCACGGGGTGGAAAATCAGAAAAT
TTAAGATTTTTCAATATGGTTTTACAATCAATTAACACCATTCTTTTTGT
TTAGAATCAATATTAAGAAGATGAATCAAATTCAATAAGATGTACCAGGT
AATCTTTTTTTATTGTCTTTGTATTCTAATTTGGAAAACAAGAATCGTTC
TTCTTATGCTTTGATGTAACAGCCGCAAGGTTGTGGCGAAGGAATTCGTC
CGCGCGGCCATACTTTAGATTTTCGGATGCTGAACATAAAACTTAGAATA
CGGGCATCGTGAGATAAACGATGTTTCAGAACCCTAATCTTGACACTCCG
TGCTTATTTCTAGTTCTCCGGTGGTCTAGATTAGATGAACCACAACAATT
CTTCTCTCGCTATTTCTTCTTTTTCTTTTTCATTTTTCATGGGAACACAA
TTGCGATCATATCCAGATGAGACGTGTATGTTCTACATTTTCCACCGTCG
TAATATCGTAATGATGATACACATTCATTATCATCATTGGCGAGGGCGAG
AATCCGGAAGCCAGATCCAGTGGAGCCCCCCACCCCACTGGAAAATTTAG
CAAAGAAATCGTCGTCAGTGGAGAAAATAACCTGAAAGTTTAACCCGCCC
ACTTGAAAAGAACCAAATGACTTTACCCTCAGTATGGTGGAAAATTGCAC
CGCAAAACCATTCCCACTGTAAACTTCGAGCTGGAATATAGAGTTTCTAT
CTCAATCGGGACACTACGATTAGATAGAAATTTCCATCTACACTGAAGGA
AAAAGCTCCACCGGGGCGGCATTGACAGTGGTGTGTGTGTTTGAGAGAAT
GAAAACAACGCCCAGAATGAAAGAGAAACCAAAAAGAAAGACCAACGAAG
TTACACTCTATATTTTATTAATTTGATTTTAATGATCAATGGCCTCATTT
TTATTTTTGGCCACTTTTTTTAATGACGTATGTATTTCGTAGCGTATATT
ATTTTATACATTGTTAAATTTAATAAAAAAGTGGCTCTTATTTTCTTCTT
CGTGACTCTCAAGCAACACGCTCTCCCTGAGCAGCTCATAATGATAACAA
TCGGTAACATTGGCGGTGGCATACTAAATAAATAATGAAAATTAAAGTTA
CTATTATATGAGTGTAAAGATCCGTGGGTACGGCAACTTCGTCCCTGTGT
ATCCCAGGCTTTATTTACGTTCTTGCTGATTGAGGCCAGAGAATACCCTG
GTGTATTATCTAGCGCTCCCAGTCAGAATCAAAACGATGATAATACGCAG
GGATCGAGGCTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000839-exon-sc0000005-1575043694:903791..904188 | TCONS_00000839-exon-sc0000005-1575043694:903791..904188 | Clytia hemisphaerica | exon |
| TCONS_00000839-exon-sc0000005-1575043694:902624..903472 | TCONS_00000839-exon-sc0000005-1575043694:902624..903472 | Clytia hemisphaerica | exon |
| TCONS_00000839-exon-sc0000005-1510915933:903791..904188 | TCONS_00000839-exon-sc0000005-1510915933:903791..904188 | Clytia hemisphaerica | exon |
| TCONS_00000839-exon-sc0000005-1510915933:902624..903472 | TCONS_00000839-exon-sc0000005-1510915933:902624..903472 | Clytia hemisphaerica | exon |
| TCONS_00000839-exon-sc0000005-1491911889:903791..904188 | TCONS_00000839-exon-sc0000005-1491911889:903791..904188 | Clytia hemisphaerica | exon |
| TCONS_00000839-exon-sc0000005-1491911889:902624..903472 | TCONS_00000839-exon-sc0000005-1491911889:902624..903472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:902624..904188 - |
Blast
The following BLAST results are available for this feature:
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