TCONS_00000838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000838
Unique NameTCONS_00000838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000838 ID=TCONS_00000838|Name=TCONS_00000838|organism=Clytia hemisphaerica|type=transcript|length=2697bp
agaaaatgaagacagaAAAGTTGAGATATTAGATTTTGAGTTATTTCAAT
CTGTTTTTGGTCATACTACGGAGAACTTATATGCCTTATTCAATGGGaaa
ttatttcctaaaaatttgacaagtaatgaaaaagaaacgctgaaaataga
atttcagaatatgttaaaatttgtaaaagatAATGGATACAAGACATTTT
ACCAGGAAGATATGTGTTGGCAGGGTCTTTATGGAATGAACATCGACTTG
GGAAAGTTTCAAGAGTGGAAGAAATTTTATGCCGAATTCAAAAATGAATC
AACTCATATTGATGACCCAGGTCTTACATTCGCTTCTTGCAAAATCATTG
ACATATCTCAACCATACAAGAAACATATTTTCAACACAAGGGAACAAATA
TGTTACAATGGACTAAATATTGATCGTTATTACTTAGACTACCTTTACAA
GAAAATCTCATCAACTAAGGATTCATTATTCAGTTTCACCGTTTTAAACA
TTGGACATGATCAAGGAGGGATAAGAATCCAAGGTGTTGATAAAGTATTA
AAgacatttttcaagaaaatgattAAAGCTAAAGATACACTGACTATATT
TTTCAGTGACCATGGTAATACATATACCAGTTATGTTTTCCAGGAATTAG
ATGGTCGTTATGAGCAATTCCATCCAACATTGTTCATGGTGATACCTGAG
CAAGTTCAACAGCTTATTGGAAAAAGAGGAATCCAGAATTTGAAAGCGAA
TCAGTACAGATTAGTTAACTTAATCGATGTTCATCATACGGTTAAAAGAC
TCATTTCGAAAGATCACCTTAGGAAAGGGCTTTTAGATTTGGTACCAGCC
AATCGTACGTGTAATGATATTGAAATGGCAATGCCAAATTTGTGTGTTTG
CCAGGGTTGGGACTCGCCAATCGAAAACACAACAGAACTAATGTCGTTTG
TCGAATTTGCTCTTGGGAAAGTGAACAATTTGATTAGTTCTGTATCATTG
GAAGGACAATGTAAACGAATGGTTCCAACAAGTTTTAAAAACGTAATGCA
ACGAAAAACAACTGAAAGTGTTATTTTAACGTTTGATATAACATCATCTC
CTGGGAAAGGGTCCAAGAATACAGAAGAGAGGATTAGTACTGAAATTAGT
TATAAAAATGCTGAACACTTGAAAACANAGACAGGATTAGTACTGAAATT
AGTTATAAAAATGCTGAACATTTGAAAACCTATGAAGGGAAACTATTATC
ATACGATCGTATATCAACCTTTGGTAAATATCGAGAGTGTAGTGACGCAC
CAAAACAATTTCGCTTTTGTGTTTGTAATATGGAATCATCAAAACAAGCC
ACCAATCAATTAGCTTTTGATGATCTCTCTTCACTAAGAACGTCACAGAT
CTATGAAATATTTGGTAAAGATAATATCGATGAAGCAGTCTATGAGTATG
ATTCTAAAGGTCTTGGATTACTGGTCCGTAAAATATACACCATAGAGCAA
ATATCAGATGCGGGAGATATGAAAAGACATCCTGTGTCTATTGCATTCGA
AGTGGTAAATATATCTTTAACAGAGACATACAACATTACCTTAACCTTTA
CTTCACTTTTCAATTTGAAGAAAGTATCAAATGGTTTGTCGTGTACAGGA
ATATCGAAACCGAAATCAATGGTTTTTCTTTGTGTGTTCGCAAGACAATA
CCCTGTCAATGATGttgattttaatttaaaatttgattttcagaaaattt
agaTGCTTGTGTAGATAAAcgtagaaaaaatatattttacataCATTAAT
ACAGTCGATGGTCTCTGGAAAGTAGCtttttgatataaaaaaattatatt
ctagctattttttggaatattttagataggaatataaaatataatttcaC
CCAGACTCCAAAAAACACCCCACAATACCATCAGCCAAACTTTCGATTTT
GATTATTCTGATTTGCAAACAttgataaaattattttgtatGTTATATAT
AGCAAAACTCAACAAACTTATAGTCACGTACTCTTGTAAGCTTCCATTTT
AttctgacaaaaattttcattttgatttggtttttcatttttattctatG
TGGATTGCAGAAAAACTTAGATCGACCTAGCTAACAAAAAAACACCGAAT
CTCATCCATGTAACATTTGTTATTTAACACTCATTTTTATTTAacatata
ttttcaaaatattcaaatgtTTGTTTCGGTGTACTTTGTGGACCTCTTCT
GTTCTGTAAGATCAGCAGACTTTGATTTGTACATTTTTCTGAGAAACATG
TAAAAATGTTCAATAAGGTTGACAAATATTCCAATTATAACAGTATAGCC
AACGATGACCAGAATACCGGAAAAATAAGTCCAATCAAATTGCTGTACTG
GTGTTTTTCCTTTGCAATGAGAGCTTGGGAACCATTTCTTTCTCAATCGA
ATCAAGGCGCCTGTCTGGTAAAGACCAAGCAAAGTATTTGATATTGTTTT
TCCATAAGGGAAGTTTTTACGATATGCAAAGGAAAGTCCATGTGTTCCGA
TAAAGCTTTCTTCTAAAAGCTCAATTTCTTTAGGACAGCCTAATTCAGAA
GTGATTCGCTGTAGAACGACTGGAAATGAACCACTATCAGCTATATAGGC
TTGGATGGTGCTGCaaagaagaataaaataaaagttatcaTTATTTC
Run BLAST on NCBI

protein sequence of TCONS_00000838-protein

>TCONS_00000838-protein ID=TCONS_00000838-protein|Name=TCONS_00000838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
ENEDRKVEILDFELFQSVFGHTTENLYALFNGKLFPKNLTSNEKETLKIE
FQNMLKFVKDNGYKTFYQEDMCWQGLYGMNIDLGKFQEWKKFYAEFKNES
THIDDPGLTFASCKIIDISQPYKKHIFNTREQICYNGLNIDRYYLDYLYK
KISSTKDSLFSFTVLNIGHDQGGIRIQGVDKVLKTFFKKMIKAKDTLTIF
FSDHGNTYTSYVFQELDGRYEQFHPTLFMVIPEQVQQLIGKRGIQNLKAN
QYRLVNLIDVHHTVKRLISKDHLRKGLLDLVPANRTCNDIEMAMPNLCVC
QGWDSPIENTTELMSFVEFALGKVNNLISSVSLEGQCKRMVPTSFKNVMQ
RKTTESVILTFDITSSPGKGSKNTEERISTEISYKNAEHLKTXTGLVLKL
VIKMLNI
Run BLAST on NCBI

transcript from alignment at sc0000005:881642..885271-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000838 ID=TCONS_00000838|Name=TCONS_00000838|organism=Clytia hemisphaerica|type=transcript|length=3630bp|location=Sequence derived from alignment at sc0000005:881642..885271- (Clytia hemisphaerica)
AGAAAATGAAGACAGAAAAGTTGAGATATTAGATTTTGAGTTATTTCAAT CTGTTTTTGGTCATACTACGGAGAACTTATATGCCTTATTCAATGGGAAA TTATTTCCTAAAAATTTGACAAGTAATGAAAAAGAAACGCTGAAAATAGA ATTTCAGAATATGTTAAAATTTGTAAAAGATAATGGATACAAGACATTTT ACCAGGAAGATATGTGTTGGCAGGGTCTTTATGGAATGAACATCGACTTG GGAAAGTTTCAAGAGTGGAAGAAATTTTATGCCGAATTCAAAAATGAATC AACTCATATTGATGACCCAGGTAAATGAATATTTCTATTCAACGTTGCAT CAAATAAACTCTACCAAAAAAAATTCATTTTCCCTCTATGGCTTGCGGTA CCTCAGCCAGTTTGATTTTGTCAACTAGTAGCACTTTCGTCTCGAACACC CCTATCTCAGTGCCCTGGTGGAACCTTTTCCCTCAGCAGGGATGAAAATT TCTATCGAAATCCCAATGGGGATAGAAAATCTATTGTTTCCAGCTCAAAA ATTCCAGTGGGGATGGTTTTTGAATCCAATTTTTTCCATTCAATTTTCAA TGGGGATAGAATCATAGGGCAATTTCCCAGTGGGGTTGAAAATGTAGGGT ATTTTTTCCACCGGGGACGATTGTTTGGCCTATTTTTCCACCGGGGCGGG GGGGTCCACCGGGTCTGTGACACAGGGGTGTTCTCGAAGACCGAGGTGAA ACCCAATCTTACTGAACATCACCTTATCACAGGCCCGGTGAAATTTTTTA GCCAGTGGGGGTAAAAATAATAGACAAAAATTTTAATTGATTGATTTTCC CTGGGAATTCGAATTCCATTGTGGATGGAAGAAATAGCACAATATTTTGC AGTGAGGATTTGCTTATCTGATTATTTTCAGTGGGGACAAAAATTCGAGT ACGATTTTAAACAGGGCACGATATTTTGGCTAATTTTTCTAGTGGAAAGG GGTCCCATTGCGTCTGTGAGAAGGGGGTGTTAATGATGATTTTGCTATCA CGACTACCACTACTCAAAAAGTGCTTCGAGATAAATATCCTTTACTTTTT AGCTGATTCTCTTTCACACTAGATTTTATGAGCTATTTAGATAGTGCCAC TCACTATTCTCAGCTATTAAAAGAAAAATATCTTACCATAGGTCATCGAG ACAGGGGTGTACAAAAAAAAAACGCTGACGCAAGAATCTTATCTTATTTT CAGGTCTTACATTCGCTTCTTGCAAAATCATTGACATATCTCAACCATAC AAGAAACATATTTTCAACACAAGGGAACAAATATGTTACAATGGACTAAA TATTGATCGTTATTACTTAGACTACCTTTACAAGAAAATCTCATCAACTA AGGATTCATTATTCAGTTTCACCGTTTTAAACATTGGACATGATCAAGGA GGGATAAGAATCCAAGGTGTTGATAAAGTATTAAAGACATTTTTCAAGAA AATGATTAAAGCTAAAGATACACTGACTATATTTTTCAGTGACCATGGTA ATACATATACCAGTTATGTTTTCCAGGAATTAGATGGTCGTTATGAGCAA TTCCATCCAACATTGTTCATGGTGATACCTGAGCAAGTTCAACAGCTTAT TGGAAAAAGAGGAATCCAGAATTTGAAAGCGAATCAGTACAGATTAGTTA ACTTAATCGATGTTCATCATACGGTTAAAAGACTCATTTCGAAAGATCAC CTTAGGAAAGGGCTTTTAGATTTGGTACCAGCCAATCGTACGTGTAATGA TATTGAAATGGCAATGCCAAATTTGTGTGTTTGCCAGGGTTGGGACTCGC CAATCGAAAACACAACAGAACTAATGTCGTTTGTCGAATTTGCTCTTGGG AAAGTGAACAATTTGATTAGTTCTGTATCATTGGAAGGACAATGTAAACG AATGGTTCCAACAAGTTTTAAAAACGTAATGCAACGAAAAACAACTGAAA GTGTTATTTTAACGTTTGATATAACATCATCTCCTGGGAAAGGGTCCAAG AATACAGAAGAGAGGATTAGTACTGAAATTAGTTATAAAAATGCTGAACA CTTGAAAACANAGACAGGATTAGTACTGAAATTAGTTATAAAAATGCTGA ACATTTGAAAACCTATGAAGGGAAACTATTATCATACGATCGTATATCAA CCTTTGGTAAATATCGAGAGTGTAGTGACGCACCAAAACAATTTCGCTTT TGTGTTTGTAATATGGAATCATCAAAACAAGCCACCAATCAATTAGCTTT TGATGATCTCTCTTCACTAAGAACGTCACAGATCTATGAAATATTTGGTA AAGATAATATCGATGAAGCAGTCTATGAGTATGATTCTAAAGGTCTTGGA TTACTGGTCCGTAAAATATACACCATAGAGCAAATATCAGATGCGGGAGA TATGAAAAGACATCCTGTGTCTATTGCATTCGAAGTGGTAAATATATCTT TAACAGAGACATACAACATTACCTTAACCTTTACTTCACTTTTCAATTTG AAGAAAGTATCAAATGGTTTGTCGTGTACAGGAATATCGAAACCGAAATC AATGGTTTTTCTTTGTGTGTTCGCAAGACAATACCCTGTCAATGATGTTG ATTTTAATTTAAAATTTGATTTTCAGAAAATTTAGATGCTTGTGTAGATA AACGTAGAAAAAATATATTTTACATACATTAATACAGTCGATGGTCTCTG GAAAGTAGCTTTTTGATATAAAAAAATTATATTCTAGCTATTTTTTGGAA TATTTTAGATAGGAATATAAAATATAATTTCACCCAGACTCCAAAAAACA CCCCACAATACCATCAGCCAAACTTTCGATTTTGATTATTCTGATTTGCA AACATTGATAAAATTATTTTGTATGTTATATATAGCAAAACTCAACAAAC TTATAGTCACGTACTCTTGTAAGCTTCCATTTTATTCTGACAAAAATTTT CATTTTGATTTGGTTTTTCATTTTTATTCTATGTGGATTGCAGAAAAACT TAGATCGACCTAGCTAACAAAAAAACACCGAATCTCATCCATGTAACATT TGTTATTTAACACTCATTTTTATTTAACATATATTTTCAAAATATTCAAA TGTTTGTTTCGGTGTACTTTGTGGACCTCTTCTGTTCTGTAAGATCAGCA GACTTTGATTTGTACATTTTTCTGAGAAACATGTAAAAATGTTCAATAAG GTTGACAAATATTCCAATTATAACAGTATAGCCAACGATGACCAGAATAC CGGAAAAATAAGTCCAATCAAATTGCTGTACTGGTGTTTTTCCTTTGCAA TGAGAGCTTGGGAACCATTTCTTTCTCAATCGAATCAAGGCGCCTGTCTG GTAAAGACCAAGCAAAGTATTTGATATTGTTTTTCCATAAGGGAAGTTTT TACGATATGCAAAGGAAAGTCCATGTGTTCCGATAAAGCTTTCTTCTAAA AGCTCAATTTCTTTAGGACAGCCTAATTCAGAAGTGATTCGCTGTAGAAC GACTGGAAATGAACCACTATCAGCTATATAGGCTTGGATGGTGCTGCAAA GAAGAATAAAATAAAAGTTATCATTATTTC

Coding sequence (CDS) from alignment at sc0000005:881642..885271-

>TCONS_00000838 ID=TCONS_00000838|Name=TCONS_00000838|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000005:881642..885271- (Clytia hemisphaerica)
GTCTTACATTCGCTTCTTGCAAAATCATTGACATATCTCAACCATACAAG
AAACATATTTTCAACACAAGGGAACAAATATGTTACAATGGACTAAATAT
TGATCGTTATTACTTAGACTACCTTTACAAGAAAATCTCATCAACTAAGG
ATTCATTATTCAGTTTCACCGTTTTAAACATTGGACATGATCAAGGAGGG
ATAAGAATCCAAGGTGTTGATAAAGTATTAAAGACATTTTTCAAGAAAAT
GATTAAAGCTAAAGATACACTGACTATATTTTTCAGTGACCATGGTAATA
CATATACCAGTTATGTTTTCCAGGAATTAGATGGTCGTTATGAGCAATTC
CATCCAACATTGTTCATGGTGATACCTGAGCAAGTTCAACAGCTTATTGG
AAAAAGAGGAATCCAGAATTTGAAAGCGAATCAGTACAGATTAGTTAACT
TAATCGATGTTCATCATACGGTTAAAAGACTCATTTCGAAAGATCACCTT
AGGAAAGGGCTTTTAGATTTGGTACCAGCCAATCGTACGTGTAATGATAT
TGAAATGGCAATGCCAAATTTGTGTGTTTGCCAGGGTTGGGACTCGCCAA
TCGAAAACACAACAGAACTAATGTCGTTTGTCGAATTTGCTCTTGGGAAA
GTGAACAATTTGATTAGTTCTGTATCATTGGAAGGACAATGTAAACGAAT
GGTTCCAACAAGTTTTAAAAACGTAATGCAACGAAAAACAACTGAAAGTG
TTATTTTAACGTTTGATATAACATCATCTCCTGGGAAAGGGTCCAAGAAT
ACAGAAGAGAGGATTAGTACTGAAATTAGTTATAAAAATGCTGAACACTT
GAAAACANAGACAGGATTAGTACTGAAATTAGTTATAAAAATGCTGAACA
TTTGAGAAAATGAAGACAGAAAAGTTGAGATATTAGATTTTGAGTTATTT
CAATCTGTTTTTGGTCATACTACGGAGAACTTATATGCCTTATTCAATGG
GAAATTATTTCCTAAAAATTTGACAAGTAATGAAAAAGAAACGCTGAAAA
TAGAATTTCAGAATATGTTAAAATTTGTAAAAGATAATGGATACAAGACA
TTTTACCAGGAAGATATGTGTTGGCAGGGTCTTTATGGAATGAACATCGA
CTTGGGAAAGTTTCAAGAGTGGAAGAAATTTTATGCCGAATTCAAAAATG
AATCAACTCATATTGATGACCCAGGTCTTACATTCGCTTCTTGCAAAATC
ATTGACATATCTCAACCATACAAGAAACATATTTTCAACACAAGGGAACA
AATATGTTACAATGGACTAAATATTGATCGTTATTACTTAGACTACCTTT
ACAAGAAAATCTCATCAACTAAGGATTCATTATTCAGTTTCACCGTTTTA
AACATTGGACATGATCAAGGAGGGATAAGAATCCAAGGTGTTGATAAAGT
ATTAAAGACATTTTTCAAGAAAATGATTAAAGCTAAAGATACACTGACTA
TATTTTTCAGTGACCATGGTAATACATATACCAGTTATGTTTTCCAGGAA
TTAGATGGTCGTTATGAGCAATTCCATCCAACATTGTTCATGGTGATACC
TGAGCAAGTTCAACAGCTTATTGGAAAAAGAGGAATCCAGAATTTGAAAG
CGAATCAGTACAGATTAGTTAACTTAATCGATGTTCATCATACGGTTAAA
AGACTCATTTCGAAAGATCACCTTAGGAAAGGGCTTTTAGATTTGGTACC
AGCCAATCGTACGTGTAATGATATTGAAATGGCAATGCCAAATTTGTGTG
TTTGCCAGGGTTGGGACTCGCCAATCGAAAACACAACAGAACTAATGTCG
TTTGTCGAATTTGCTCTTGGGAAAGTGAACAATTTGATTAGTTCTGTATC
ATTGGAAGGACAATGTAAACGAATGGTTCCAACAAGTTTTAAAAACGTAA
TGCAACGAAAAACAACTGAAAGTGTTATTTTAACGTTTGATATAACATCA
TCTCCTGGGAAAGGGTCCAAGAATACAGAAGAGAGGATTAGTACTGAAAT
TAGTTATAAAAATGCTGAACACTTGAAAACANAGACAGGATTAGTACTGA
AATTAGTTATAAAAATGCTGAACATTTGAGAAAATGAAGACAGAAAAGTT
GAGATATTAGATTTTGAGTTATTTCAATCTGTTTTTGGTCATACTACGGA
GAACTTATATGCCTTATTCAATGGGAAATTATTTCCTAAAAATTTGACAA
GTAATGAAAAAGAAACGCTGAAAATAGAATTTCAGAATATGTTAAAATTT
GTAAAAGATAATGGATACAAGACATTTTACCAGGAAGATATGTGTTGGCA
GGGTCTTTATGGAATGAACATCGACTTGGGAAAGTTTCAAGAGTGGAAGA
AATTTTATGCCGAATTCAAAAATGAATCAACTCATATTGATGACCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000503XLOC_000503Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000838-proteinTCONS_00000838-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000838-exon-sc0000005-1575043694:884952..885271TCONS_00000838-exon-sc0000005-1575043694:884952..885271Clytia hemisphaericaexon
TCONS_00000838-exon-sc0000005-1575043694:881642..884018TCONS_00000838-exon-sc0000005-1575043694:881642..884018Clytia hemisphaericaexon
TCONS_00000838-exon-sc0000005-1510915933:884952..885271TCONS_00000838-exon-sc0000005-1510915933:884952..885271Clytia hemisphaericaexon
TCONS_00000838-exon-sc0000005-1510915933:881642..884018TCONS_00000838-exon-sc0000005-1510915933:881642..884018Clytia hemisphaericaexon
TCONS_00000838-exon-sc0000005-1491911889:884952..885271TCONS_00000838-exon-sc0000005-1491911889:884952..885271Clytia hemisphaericaexon
TCONS_00000838-exon-sc0000005-1491911889:881642..884018TCONS_00000838-exon-sc0000005-1491911889:881642..884018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:881642..885271 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 4.32959 2.71986 8.74816 7.67004 6.3252 7.69725 3.38221 3.27425 0.144154 0.0874703 0.814319 1.10344 0.0642275 0.150191 0.0794907 0.332311 0 0 0.0245589 0 0.0406666 0 0 0 0.015827 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017849Alkaline_Pase-like_a/b/a
IPR004245DUF229
IPR017850Alkaline_phosphatase_core
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top