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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000838 ID=TCONS_00000838|Name=TCONS_00000838|organism=Clytia hemisphaerica|type=transcript|length=2697bp
agaaaatgaagacagaAAAGTTGAGATATTAGATTTTGAGTTATTTCAAT
CTGTTTTTGGTCATACTACGGAGAACTTATATGCCTTATTCAATGGGaaa
ttatttcctaaaaatttgacaagtaatgaaaaagaaacgctgaaaataga
atttcagaatatgttaaaatttgtaaaagatAATGGATACAAGACATTTT
ACCAGGAAGATATGTGTTGGCAGGGTCTTTATGGAATGAACATCGACTTG
GGAAAGTTTCAAGAGTGGAAGAAATTTTATGCCGAATTCAAAAATGAATC
AACTCATATTGATGACCCAGGTCTTACATTCGCTTCTTGCAAAATCATTG
ACATATCTCAACCATACAAGAAACATATTTTCAACACAAGGGAACAAATA
TGTTACAATGGACTAAATATTGATCGTTATTACTTAGACTACCTTTACAA
GAAAATCTCATCAACTAAGGATTCATTATTCAGTTTCACCGTTTTAAACA
TTGGACATGATCAAGGAGGGATAAGAATCCAAGGTGTTGATAAAGTATTA
AAgacatttttcaagaaaatgattAAAGCTAAAGATACACTGACTATATT
TTTCAGTGACCATGGTAATACATATACCAGTTATGTTTTCCAGGAATTAG
ATGGTCGTTATGAGCAATTCCATCCAACATTGTTCATGGTGATACCTGAG
CAAGTTCAACAGCTTATTGGAAAAAGAGGAATCCAGAATTTGAAAGCGAA
TCAGTACAGATTAGTTAACTTAATCGATGTTCATCATACGGTTAAAAGAC
TCATTTCGAAAGATCACCTTAGGAAAGGGCTTTTAGATTTGGTACCAGCC
AATCGTACGTGTAATGATATTGAAATGGCAATGCCAAATTTGTGTGTTTG
CCAGGGTTGGGACTCGCCAATCGAAAACACAACAGAACTAATGTCGTTTG
TCGAATTTGCTCTTGGGAAAGTGAACAATTTGATTAGTTCTGTATCATTG
GAAGGACAATGTAAACGAATGGTTCCAACAAGTTTTAAAAACGTAATGCA
ACGAAAAACAACTGAAAGTGTTATTTTAACGTTTGATATAACATCATCTC
CTGGGAAAGGGTCCAAGAATACAGAAGAGAGGATTAGTACTGAAATTAGT
TATAAAAATGCTGAACACTTGAAAACANAGACAGGATTAGTACTGAAATT
AGTTATAAAAATGCTGAACATTTGAAAACCTATGAAGGGAAACTATTATC
ATACGATCGTATATCAACCTTTGGTAAATATCGAGAGTGTAGTGACGCAC
CAAAACAATTTCGCTTTTGTGTTTGTAATATGGAATCATCAAAACAAGCC
ACCAATCAATTAGCTTTTGATGATCTCTCTTCACTAAGAACGTCACAGAT
CTATGAAATATTTGGTAAAGATAATATCGATGAAGCAGTCTATGAGTATG
ATTCTAAAGGTCTTGGATTACTGGTCCGTAAAATATACACCATAGAGCAA
ATATCAGATGCGGGAGATATGAAAAGACATCCTGTGTCTATTGCATTCGA
AGTGGTAAATATATCTTTAACAGAGACATACAACATTACCTTAACCTTTA
CTTCACTTTTCAATTTGAAGAAAGTATCAAATGGTTTGTCGTGTACAGGA
ATATCGAAACCGAAATCAATGGTTTTTCTTTGTGTGTTCGCAAGACAATA
CCCTGTCAATGATGttgattttaatttaaaatttgattttcagaaaattt
agaTGCTTGTGTAGATAAAcgtagaaaaaatatattttacataCATTAAT
ACAGTCGATGGTCTCTGGAAAGTAGCtttttgatataaaaaaattatatt
ctagctattttttggaatattttagataggaatataaaatataatttcaC
CCAGACTCCAAAAAACACCCCACAATACCATCAGCCAAACTTTCGATTTT
GATTATTCTGATTTGCAAACAttgataaaattattttgtatGTTATATAT
AGCAAAACTCAACAAACTTATAGTCACGTACTCTTGTAAGCTTCCATTTT
AttctgacaaaaattttcattttgatttggtttttcatttttattctatG
TGGATTGCAGAAAAACTTAGATCGACCTAGCTAACAAAAAAACACCGAAT
CTCATCCATGTAACATTTGTTATTTAACACTCATTTTTATTTAacatata
ttttcaaaatattcaaatgtTTGTTTCGGTGTACTTTGTGGACCTCTTCT
GTTCTGTAAGATCAGCAGACTTTGATTTGTACATTTTTCTGAGAAACATG
TAAAAATGTTCAATAAGGTTGACAAATATTCCAATTATAACAGTATAGCC
AACGATGACCAGAATACCGGAAAAATAAGTCCAATCAAATTGCTGTACTG
GTGTTTTTCCTTTGCAATGAGAGCTTGGGAACCATTTCTTTCTCAATCGA
ATCAAGGCGCCTGTCTGGTAAAGACCAAGCAAAGTATTTGATATTGTTTT
TCCATAAGGGAAGTTTTTACGATATGCAAAGGAAAGTCCATGTGTTCCGA
TAAAGCTTTCTTCTAAAAGCTCAATTTCTTTAGGACAGCCTAATTCAGAA
GTGATTCGCTGTAGAACGACTGGAAATGAACCACTATCAGCTATATAGGC
TTGGATGGTGCTGCaaagaagaataaaataaaagttatcaTTATTTC Run BLAST on NCBI protein sequence of TCONS_00000838-protein >TCONS_00000838-protein ID=TCONS_00000838-protein|Name=TCONS_00000838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
ENEDRKVEILDFELFQSVFGHTTENLYALFNGKLFPKNLTSNEKETLKIE
FQNMLKFVKDNGYKTFYQEDMCWQGLYGMNIDLGKFQEWKKFYAEFKNES
THIDDPGLTFASCKIIDISQPYKKHIFNTREQICYNGLNIDRYYLDYLYK
KISSTKDSLFSFTVLNIGHDQGGIRIQGVDKVLKTFFKKMIKAKDTLTIF
FSDHGNTYTSYVFQELDGRYEQFHPTLFMVIPEQVQQLIGKRGIQNLKAN
QYRLVNLIDVHHTVKRLISKDHLRKGLLDLVPANRTCNDIEMAMPNLCVC
QGWDSPIENTTELMSFVEFALGKVNNLISSVSLEGQCKRMVPTSFKNVMQ
RKTTESVILTFDITSSPGKGSKNTEERISTEISYKNAEHLKTXTGLVLKL
VIKMLNI Run BLAST on NCBI transcript from alignment at sc0000005:881642..885271- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000838 ID=TCONS_00000838|Name=TCONS_00000838|organism=Clytia hemisphaerica|type=transcript|length=3630bp|location=Sequence derived from alignment at sc0000005:881642..885271- (Clytia hemisphaerica)
AGAAAATGAAGACAGAAAAGTTGAGATATTAGATTTTGAGTTATTTCAAT
CTGTTTTTGGTCATACTACGGAGAACTTATATGCCTTATTCAATGGGAAA
TTATTTCCTAAAAATTTGACAAGTAATGAAAAAGAAACGCTGAAAATAGA
ATTTCAGAATATGTTAAAATTTGTAAAAGATAATGGATACAAGACATTTT
ACCAGGAAGATATGTGTTGGCAGGGTCTTTATGGAATGAACATCGACTTG
GGAAAGTTTCAAGAGTGGAAGAAATTTTATGCCGAATTCAAAAATGAATC
AACTCATATTGATGACCCAGGTAAATGAATATTTCTATTCAACGTTGCAT
CAAATAAACTCTACCAAAAAAAATTCATTTTCCCTCTATGGCTTGCGGTA
CCTCAGCCAGTTTGATTTTGTCAACTAGTAGCACTTTCGTCTCGAACACC
CCTATCTCAGTGCCCTGGTGGAACCTTTTCCCTCAGCAGGGATGAAAATT
TCTATCGAAATCCCAATGGGGATAGAAAATCTATTGTTTCCAGCTCAAAA
ATTCCAGTGGGGATGGTTTTTGAATCCAATTTTTTCCATTCAATTTTCAA
TGGGGATAGAATCATAGGGCAATTTCCCAGTGGGGTTGAAAATGTAGGGT
ATTTTTTCCACCGGGGACGATTGTTTGGCCTATTTTTCCACCGGGGCGGG
GGGGTCCACCGGGTCTGTGACACAGGGGTGTTCTCGAAGACCGAGGTGAA
ACCCAATCTTACTGAACATCACCTTATCACAGGCCCGGTGAAATTTTTTA
GCCAGTGGGGGTAAAAATAATAGACAAAAATTTTAATTGATTGATTTTCC
CTGGGAATTCGAATTCCATTGTGGATGGAAGAAATAGCACAATATTTTGC
AGTGAGGATTTGCTTATCTGATTATTTTCAGTGGGGACAAAAATTCGAGT
ACGATTTTAAACAGGGCACGATATTTTGGCTAATTTTTCTAGTGGAAAGG
GGTCCCATTGCGTCTGTGAGAAGGGGGTGTTAATGATGATTTTGCTATCA
CGACTACCACTACTCAAAAAGTGCTTCGAGATAAATATCCTTTACTTTTT
AGCTGATTCTCTTTCACACTAGATTTTATGAGCTATTTAGATAGTGCCAC
TCACTATTCTCAGCTATTAAAAGAAAAATATCTTACCATAGGTCATCGAG
ACAGGGGTGTACAAAAAAAAAACGCTGACGCAAGAATCTTATCTTATTTT
CAGGTCTTACATTCGCTTCTTGCAAAATCATTGACATATCTCAACCATAC
AAGAAACATATTTTCAACACAAGGGAACAAATATGTTACAATGGACTAAA
TATTGATCGTTATTACTTAGACTACCTTTACAAGAAAATCTCATCAACTA
AGGATTCATTATTCAGTTTCACCGTTTTAAACATTGGACATGATCAAGGA
GGGATAAGAATCCAAGGTGTTGATAAAGTATTAAAGACATTTTTCAAGAA
AATGATTAAAGCTAAAGATACACTGACTATATTTTTCAGTGACCATGGTA
ATACATATACCAGTTATGTTTTCCAGGAATTAGATGGTCGTTATGAGCAA
TTCCATCCAACATTGTTCATGGTGATACCTGAGCAAGTTCAACAGCTTAT
TGGAAAAAGAGGAATCCAGAATTTGAAAGCGAATCAGTACAGATTAGTTA
ACTTAATCGATGTTCATCATACGGTTAAAAGACTCATTTCGAAAGATCAC
CTTAGGAAAGGGCTTTTAGATTTGGTACCAGCCAATCGTACGTGTAATGA
TATTGAAATGGCAATGCCAAATTTGTGTGTTTGCCAGGGTTGGGACTCGC
CAATCGAAAACACAACAGAACTAATGTCGTTTGTCGAATTTGCTCTTGGG
AAAGTGAACAATTTGATTAGTTCTGTATCATTGGAAGGACAATGTAAACG
AATGGTTCCAACAAGTTTTAAAAACGTAATGCAACGAAAAACAACTGAAA
GTGTTATTTTAACGTTTGATATAACATCATCTCCTGGGAAAGGGTCCAAG
AATACAGAAGAGAGGATTAGTACTGAAATTAGTTATAAAAATGCTGAACA
CTTGAAAACANAGACAGGATTAGTACTGAAATTAGTTATAAAAATGCTGA
ACATTTGAAAACCTATGAAGGGAAACTATTATCATACGATCGTATATCAA
CCTTTGGTAAATATCGAGAGTGTAGTGACGCACCAAAACAATTTCGCTTT
TGTGTTTGTAATATGGAATCATCAAAACAAGCCACCAATCAATTAGCTTT
TGATGATCTCTCTTCACTAAGAACGTCACAGATCTATGAAATATTTGGTA
AAGATAATATCGATGAAGCAGTCTATGAGTATGATTCTAAAGGTCTTGGA
TTACTGGTCCGTAAAATATACACCATAGAGCAAATATCAGATGCGGGAGA
TATGAAAAGACATCCTGTGTCTATTGCATTCGAAGTGGTAAATATATCTT
TAACAGAGACATACAACATTACCTTAACCTTTACTTCACTTTTCAATTTG
AAGAAAGTATCAAATGGTTTGTCGTGTACAGGAATATCGAAACCGAAATC
AATGGTTTTTCTTTGTGTGTTCGCAAGACAATACCCTGTCAATGATGTTG
ATTTTAATTTAAAATTTGATTTTCAGAAAATTTAGATGCTTGTGTAGATA
AACGTAGAAAAAATATATTTTACATACATTAATACAGTCGATGGTCTCTG
GAAAGTAGCTTTTTGATATAAAAAAATTATATTCTAGCTATTTTTTGGAA
TATTTTAGATAGGAATATAAAATATAATTTCACCCAGACTCCAAAAAACA
CCCCACAATACCATCAGCCAAACTTTCGATTTTGATTATTCTGATTTGCA
AACATTGATAAAATTATTTTGTATGTTATATATAGCAAAACTCAACAAAC
TTATAGTCACGTACTCTTGTAAGCTTCCATTTTATTCTGACAAAAATTTT
CATTTTGATTTGGTTTTTCATTTTTATTCTATGTGGATTGCAGAAAAACT
TAGATCGACCTAGCTAACAAAAAAACACCGAATCTCATCCATGTAACATT
TGTTATTTAACACTCATTTTTATTTAACATATATTTTCAAAATATTCAAA
TGTTTGTTTCGGTGTACTTTGTGGACCTCTTCTGTTCTGTAAGATCAGCA
GACTTTGATTTGTACATTTTTCTGAGAAACATGTAAAAATGTTCAATAAG
GTTGACAAATATTCCAATTATAACAGTATAGCCAACGATGACCAGAATAC
CGGAAAAATAAGTCCAATCAAATTGCTGTACTGGTGTTTTTCCTTTGCAA
TGAGAGCTTGGGAACCATTTCTTTCTCAATCGAATCAAGGCGCCTGTCTG
GTAAAGACCAAGCAAAGTATTTGATATTGTTTTTCCATAAGGGAAGTTTT
TACGATATGCAAAGGAAAGTCCATGTGTTCCGATAAAGCTTTCTTCTAAA
AGCTCAATTTCTTTAGGACAGCCTAATTCAGAAGTGATTCGCTGTAGAAC
GACTGGAAATGAACCACTATCAGCTATATAGGCTTGGATGGTGCTGCAAA
GAAGAATAAAATAAAAGTTATCATTATTTC Coding sequence (CDS) from alignment at sc0000005:881642..885271- >TCONS_00000838 ID=TCONS_00000838|Name=TCONS_00000838|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000005:881642..885271- (Clytia hemisphaerica)
GTCTTACATTCGCTTCTTGCAAAATCATTGACATATCTCAACCATACAAG
AAACATATTTTCAACACAAGGGAACAAATATGTTACAATGGACTAAATAT
TGATCGTTATTACTTAGACTACCTTTACAAGAAAATCTCATCAACTAAGG
ATTCATTATTCAGTTTCACCGTTTTAAACATTGGACATGATCAAGGAGGG
ATAAGAATCCAAGGTGTTGATAAAGTATTAAAGACATTTTTCAAGAAAAT
GATTAAAGCTAAAGATACACTGACTATATTTTTCAGTGACCATGGTAATA
CATATACCAGTTATGTTTTCCAGGAATTAGATGGTCGTTATGAGCAATTC
CATCCAACATTGTTCATGGTGATACCTGAGCAAGTTCAACAGCTTATTGG
AAAAAGAGGAATCCAGAATTTGAAAGCGAATCAGTACAGATTAGTTAACT
TAATCGATGTTCATCATACGGTTAAAAGACTCATTTCGAAAGATCACCTT
AGGAAAGGGCTTTTAGATTTGGTACCAGCCAATCGTACGTGTAATGATAT
TGAAATGGCAATGCCAAATTTGTGTGTTTGCCAGGGTTGGGACTCGCCAA
TCGAAAACACAACAGAACTAATGTCGTTTGTCGAATTTGCTCTTGGGAAA
GTGAACAATTTGATTAGTTCTGTATCATTGGAAGGACAATGTAAACGAAT
GGTTCCAACAAGTTTTAAAAACGTAATGCAACGAAAAACAACTGAAAGTG
TTATTTTAACGTTTGATATAACATCATCTCCTGGGAAAGGGTCCAAGAAT
ACAGAAGAGAGGATTAGTACTGAAATTAGTTATAAAAATGCTGAACACTT
GAAAACANAGACAGGATTAGTACTGAAATTAGTTATAAAAATGCTGAACA
TTTGAGAAAATGAAGACAGAAAAGTTGAGATATTAGATTTTGAGTTATTT
CAATCTGTTTTTGGTCATACTACGGAGAACTTATATGCCTTATTCAATGG
GAAATTATTTCCTAAAAATTTGACAAGTAATGAAAAAGAAACGCTGAAAA
TAGAATTTCAGAATATGTTAAAATTTGTAAAAGATAATGGATACAAGACA
TTTTACCAGGAAGATATGTGTTGGCAGGGTCTTTATGGAATGAACATCGA
CTTGGGAAAGTTTCAAGAGTGGAAGAAATTTTATGCCGAATTCAAAAATG
AATCAACTCATATTGATGACCCAGGTCTTACATTCGCTTCTTGCAAAATC
ATTGACATATCTCAACCATACAAGAAACATATTTTCAACACAAGGGAACA
AATATGTTACAATGGACTAAATATTGATCGTTATTACTTAGACTACCTTT
ACAAGAAAATCTCATCAACTAAGGATTCATTATTCAGTTTCACCGTTTTA
AACATTGGACATGATCAAGGAGGGATAAGAATCCAAGGTGTTGATAAAGT
ATTAAAGACATTTTTCAAGAAAATGATTAAAGCTAAAGATACACTGACTA
TATTTTTCAGTGACCATGGTAATACATATACCAGTTATGTTTTCCAGGAA
TTAGATGGTCGTTATGAGCAATTCCATCCAACATTGTTCATGGTGATACC
TGAGCAAGTTCAACAGCTTATTGGAAAAAGAGGAATCCAGAATTTGAAAG
CGAATCAGTACAGATTAGTTAACTTAATCGATGTTCATCATACGGTTAAA
AGACTCATTTCGAAAGATCACCTTAGGAAAGGGCTTTTAGATTTGGTACC
AGCCAATCGTACGTGTAATGATATTGAAATGGCAATGCCAAATTTGTGTG
TTTGCCAGGGTTGGGACTCGCCAATCGAAAACACAACAGAACTAATGTCG
TTTGTCGAATTTGCTCTTGGGAAAGTGAACAATTTGATTAGTTCTGTATC
ATTGGAAGGACAATGTAAACGAATGGTTCCAACAAGTTTTAAAAACGTAA
TGCAACGAAAAACAACTGAAAGTGTTATTTTAACGTTTGATATAACATCA
TCTCCTGGGAAAGGGTCCAAGAATACAGAAGAGAGGATTAGTACTGAAAT
TAGTTATAAAAATGCTGAACACTTGAAAACANAGACAGGATTAGTACTGA
AATTAGTTATAAAAATGCTGAACATTTGAGAAAATGAAGACAGAAAAGTT
GAGATATTAGATTTTGAGTTATTTCAATCTGTTTTTGGTCATACTACGGA
GAACTTATATGCCTTATTCAATGGGAAATTATTTCCTAAAAATTTGACAA
GTAATGAAAAAGAAACGCTGAAAATAGAATTTCAGAATATGTTAAAATTT
GTAAAAGATAATGGATACAAGACATTTTACCAGGAAGATATGTGTTGGCA
GGGTCTTTATGGAATGAACATCGACTTGGGAAAGTTTCAAGAGTGGAAGA
AATTTTATGCCGAATTCAAAAATGAATCAACTCATATTGATGACCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000838-exon-sc0000005-1575043694:884952..885271 | TCONS_00000838-exon-sc0000005-1575043694:884952..885271 | Clytia hemisphaerica | exon |
| TCONS_00000838-exon-sc0000005-1575043694:881642..884018 | TCONS_00000838-exon-sc0000005-1575043694:881642..884018 | Clytia hemisphaerica | exon |
| TCONS_00000838-exon-sc0000005-1510915933:884952..885271 | TCONS_00000838-exon-sc0000005-1510915933:884952..885271 | Clytia hemisphaerica | exon |
| TCONS_00000838-exon-sc0000005-1510915933:881642..884018 | TCONS_00000838-exon-sc0000005-1510915933:881642..884018 | Clytia hemisphaerica | exon |
| TCONS_00000838-exon-sc0000005-1491911889:884952..885271 | TCONS_00000838-exon-sc0000005-1491911889:884952..885271 | Clytia hemisphaerica | exon |
| TCONS_00000838-exon-sc0000005-1491911889:881642..884018 | TCONS_00000838-exon-sc0000005-1491911889:881642..884018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:881642..885271 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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