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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000836 ID=TCONS_00000836|Name=TCONS_00000836|organism=Clytia hemisphaerica|type=transcript|length=3618bpRun BLAST on NCBI transcript from alignment at sc0000005:837079..846764- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000836 ID=TCONS_00000836|Name=TCONS_00000836|organism=Clytia hemisphaerica|type=transcript|length=9686bp|location=Sequence derived from alignment at sc0000005:837079..846764- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000836 vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3) HSP 1 Score: 157.147 bits (396), Expect = 1.458e-38 Identity = 179/697 (25.68%), Postives = 307/697 (44.05%), Query Frame = 2
Query: 443 LKERSTENFGYCPGVTEGKESFKGRYIFPNLIVGSQIMFRCAYGKSSFS--RSCYLGANGPV---WSPLDLKKCDAKSATTQSLLELNQTLAKCGVGKDCRLTAFNTSEQLDRDIASANNLTTEEDINLVTEILGNIVNQANQQNQTNEDMKKIMNNTVSVVEKILEASDNIKITDQETSRQNSQSMLQSFEKLAEKTSKGLKPNESTSFESQNIAVVTS------NPSSDLDLEVSSFDSTENSGEIRIQQSQTTTTGNVSDPSLQEAFLGSVKVPREVLQESVGCQDGFYSYLIKNAGFLFQPELSNFE--------LKGNVLGASCGSQKIENLRRPVVLKFPRQPVVAVISEDEKEEEIPLNQCGYWDTLT----GSWSTRGVSTSLTNDQSIVECSTDHLTNFAMLLDVSQTGS-----NPLALQIITWIGCGISLAGLLLTIVSFAIFRKVRRKLVPKLLICLSTSLAMTLIIFLAAAEKTEPRY--LCQTTAGLIQYFLLSMFCWSSVEAFHLYYSFVKIFATGSDSRFFRKALLFAYGSPAVIVAVTASLR-------PENYG---NDKFCVV-NGLPFFLSMLLPICLILSANMVVLVLVVRAITKSGTMAANKNKQDGNEAMKKAKIAFACSVLLGLTYIFGVLAVGALTSFFQWLFCIFNSLQGXXXXXXXXXNNQELKTEWMDFL 2410
L + G+C + E K Y +P+ I S+ + C K FS R C+ A P+ W P+D+ C L E N+ + Q+ A NLT+ N+V ++ IVN+ + N D +++ ++ NI + ++S L++ ++LA K L + ++N+A+ S N S+ + + S + E+ ++ + Q DP L SV +P +L E++ +D S L++ A F F + F+ L V+ S G+ I+NL+ PV +K + + +E+ C +WD G W+T G +D S C +H T+F +L+D+ ++ S N L I++IGCGIS T++++ F K+RR K+L+ LST+L ++FL T LC A L+ +FLL+ F W +EA H+Y + VK+F T R+ K + +G PA++V+V + R E+YG D+FC + + + F+++ ++ N+ + ++V+ I G N+ E ++ + + + LLG+T+ F A G L F +LF IFNSLQG FIF F+ + ++ +W L
Sbjct: 514 LHTVNVRQLGHCLAMEEPKG-----YYWPS-IQPSEYVLPCP-DKPGFSASRICFYNATNPLVTYWGPVDISNC---------LKEANEV-----------------ANQILNLTADGQNLTSANITNIVEQV-KRIVNK-----EENID--------ITLGSTLMNIFSNILSSSDSDLLESSSEALKTIDELAFKID--LNSTSHVNITTRNLALSVSSLLPGTNAISNFSIGLPS--NNESYFQMDFESGQV-------DP------LASVILPPNLL-ENLSPED---SVLVRRAQFTFFNKTGLFQDVGPQRKTLVSYVMACSIGNITIQNLKDPVQIKI----------KHTRTQEVHHPICAFWDLNKNKSFGGWNTSGCVAHRDSDASETVCLCNHFTHFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLLTYVAFEKLRRDYPSKILMNLSTALLFLNLLFLLDGWITSFNVDGLCIAVAVLLHFFLLATFTWMGLEAIHMYIALVKVFNT-YIRRYILKFCIIGWGLPALVVSVVLASRNNNEVYGKESYGKEKGDEFCWIQDPVIFYVTCAGYFGVMFFLNIAMFIVVMVQIC--GRNGKRSNRTLREEVLRNLRSVVSLTFLLGMTWGFAFFAWGPLNIPFMYLFSIFNSLQGLFIFIFHCAMKENVQKQWRQHL 1129 The following BLAST results are available for this feature:
BLAST of TCONS_00000836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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