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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000833 ID=TCONS_00000833|Name=TCONS_00000833|organism=Clytia hemisphaerica|type=transcript|length=1919bp
aaaattatgcatgtaagttttatattagtACTATCTTTTCACATAGGTTT
TACATTAAGGTTTTAGTACAttattttcctatgaaatctCATCACTGCAA
ATTATTTGTTGCCAGTTGTAAGTTCGAAGAAACTGAAGTGAAAGTATTTG
ATTTGAATCACATTCAAATGGCAGAAACAAAGCAGGGGCTAATCATACTT
GCACAAAAGATAATAAGCAATGACAAAAGCAATCAGACAGGTGAGATGGT
CTATCGTGTGCAGTGGTATGACAGTATCATTCCTGAAAGCAATTTGAGAA
AGATGTTTCCTGATTTACTCAAAGAATATGAGTCAAAACAAAAGGTCAAG
CCCAATCAAAAGGAGGGAGGTGGAACGAAAAGTCATCATAAGGAATCTCA
AAAGCATACTACCTTAATTCCAAGTTCTCCTAAAAAAATTCTCCATAAAA
CATATTCTCAAGAACTTTCTGCAAAAGAAGtattggcaaaaaaattgatt
cagaaacaaaaaaatgcatCTGGAACTGATGCGTTTCATTGTGATTTTTg
tgaaaagaaattcaagaCATCAATTGATTTGAAATGTCATATTTATATTC
ATCAGTTTGCAAATGATCGAATTAAGGTTACAAAACCTGGAGTAAGAGAG
GGCCCTTCTATAGCCCCAGTTAAGTCGAACAAATCAAAAAGAAAGCCAAC
AAGAAAATATACAccattagaaaaaacaaaatgtgaTATATGTGGTAAAG
AAGTAACTTCAAAGAGATTAGAGTCACATAAAATTACttatcatttgaaa
aatggaaaatttcctTGTTCTGAGTGTGAAAAGCGTTTTCAATGTAACAG
GGATCTTCAAAGGCATGCAGAAATACACAAAGATGGAAAGCTTGAGAAAA
CAAGCTGTGATATTTGTGGTAAAATTTTAACAAAGAGGCATTTGGAGAAT
CATAAGAATCGTTTTCATTCACAAGGGGAATATACTTGCAAGAAGTGTAA
TAAAATATTCAAGCATCTTCTTGACCTAGACTGGCATCTCAAGAAACCGT
GCACTGAAACACCGAATGCTGAGGAAACAAGCACTAGAAAATAGTgtaac
aaaatatccaatagtATAAATGATTGaacatttaattttaattttaattt
tgtttgtaaaattTTGTACATATTTAAGTATATAAGTAACCTTTGTATCA
AAGCCAACTTGAGGGCAGGAAAAGGCCCACTTAttctttccctggatttc
tccacttaccatATCTTAAATTGCTGAAAATTAAGCAGAGAGGCAACCAT
TTTATGAATCTCTTGTATGACCCCCCTTGGGCTTGAACCTACAGCCTTGC
ACACTTTAATTGAATGCTCTTTTGGGCTGTTGTAGTATATCCTTCAATTC
AGCTTTTCGTTCTCTCAGCCCTAACGGATAGTGATGACAATGTAACATAA
GATTTTTAAACATAGTATTTAttgggggggtttgtacttttacggtgtga
cgggattggcccttttttagtacggtatcacgggatttgacgaaaaaaag
acgggaaaacaacggtattttaaaatcagacggtgacggtatttaggtac
atttttgccctgtacaagccgatgtgacggtgttattattttttcaattt
tcgggattccgggattcagcaaaaaatttgatgggaaaacggtatttcaa
aCCCCTACATAccgcccccccccctttattgaTATAGATTAAAATAGATC
ACATTATTTAGCATATTTTAGGTacatattatttttaatttttgtgcatA
GAATTAAAACATGATTTTCAGGCATGAAAAAAACTAAGTAAATAAGGCAC
AGActattttaaactatttttgtaggttttttgttttatttcaaaattca
ctaTGAATTAACTTTTAGG Run BLAST on NCBI protein sequence of TCONS_00000833-protein >TCONS_00000833-protein ID=TCONS_00000833-protein|Name=TCONS_00000833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
NYACKFYISTIFSHRFYIKVLVHYFPMKSHHCKLFVASCKFEETEVKVFD
LNHIQMAETKQGLIILAQKIISNDKSNQTGEMVYRVQWYDSIIPESNLRK
MFPDLLKEYESKQKVKPNQKEGGGTKSHHKESQKHTTLIPSSPKKILHKT
YSQELSAKEVLAKKLIQKQKNASGTDAFHCDFCEKKFKTSIDLKCHIYIH
QFANDRIKVTKPGVREGPSIAPVKSNKSKRKPTRKYTPLEKTKCDICGKE
VTSKRLESHKITYHLKNGKFPCSECEKRFQCNRDLQRHAEIHKDGKLEKT
SCDICGKILTKRHLENHKNRFHSQGEYTCKKCNKIFKHLLDLDWHLKKPC
TETPNAEETSTRK Run BLAST on NCBI transcript from alignment at sc0000005:769635..773983- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000833 ID=TCONS_00000833|Name=TCONS_00000833|organism=Clytia hemisphaerica|type=transcript|length=4349bp|location=Sequence derived from alignment at sc0000005:769635..773983- (Clytia hemisphaerica)
AAAATTATGCATGTAAGTTTTATATTAGTACTATCTTTTCACATAGGTTT
TACATTAAGGTTTTAGTACATTATTTTCCTATGAAATCTCATCACTGCAA
ATTATTTGTTGCCAGTTGTAAGGTAATTAAATAACCACCTAAAAATTAAT
TATTGAGGAAAATGTGATTTATGACGTAATCAAATTATGACGTCATAAAT
CGTAAAATATCTATATCTATGTCAAACTTTTGTCAAATTCGGACCAAAGA
TGCATCTTATTCTTAATGCTTTTACTTTCTGGAAAGATGACGTCAGCAAA
ATATGTAAAAAGTTGAAAGCTGCTCCCTTATTTATTACACAAATATTACT
AGTCATTTTATTAAGACGAATTGAAAATAAAAACCGCCTTTATTAAAACC
AGCCGTGGTGTCCCAGGGATCGAATTAGCATACCGCATTTTGCAATTCGC
AATGCGTTTTTGGATTACTTTACAAGCTAAAAATTGGAAATTGGTCCATT
TTAGGATGCAAAATCATGCTTATCAGAAAATTTCGATGCACTTTCTATCC
CTTATTTCGATGCCTGTGTCCTTGAAAAAGCAAATAAAATTTTTTGCGTG
CTAATTTCAAGCCCATTGAATACTTGCCTAGTAATATTTGTGTAATAAGG
TAATTTTTGTTGACGTCATCAAATATTTCAATAAACATTTTTCTTCAAAT
AGTTACACTTCAATTAGATGCATCTTTGGTCCAAATTTGGTGAAGTTTGG
AAATGTATTTCTAATATTATAGCGATTTTTTTACGATTCATGACGTCATC
AAATTGGATCAAATTTTGACGTCATAACAACAATTTCTTTAATTATTAAT
TTTTGGGGTTATATTTAATTAGGTCACAAGATTCATAAACTTCAAGGTAT
AACCTTTGAGCCCTGAGTGGATCCCTACTTTACATAATGGCTGCTATTGA
TCGCAAAAACTTAGGGTAAATTGTTAGGTTTTTNTGTTGCCAGTTGTGAG
GTAATTAAATAACCACCTAAAAATTAATTATTGAGGAAAATGTGATTTAT
GACGTAATCAGATTATGACGTCATAAATCGTAAAATATCTATATCTATGT
CAAACTTTTGTCAAATTTGGACTATTCTTAATGCTTTTACTTTCTGGAAA
GATGACGTCAGCAAAATATGTAAAAAGTTGAAAGCTGCTCCCTTATTTAT
TACACAAATATTACTAGTCATTTTATTAAGACGAATTGAAAATAAAAACC
GCCTTTATTAAAACCAGCCGTGGTGTCCCAGGGATCGAATTAGCATACCG
CATTTTGCAATTCGCAATGCGTTTTTGGATTACTTTACAAGCTAAAAATT
GGAAATTGGTCCATTTTAGGATGCAAAATCATGCTTATCAGAAAATTTCG
ATGCACTTTCTATCCCTTATTTCGATGCCTGTGTCCTTGAAAAAGCAAAT
AAAATTTTTTGCGTGCTAATTTCAAGCCCATTGAATACTTGCCTAGTAAT
ATTTGTGTAATAAGGTAATTTTTGTTGACGTCATCAAATATTTCAATAAA
CATTTTTCTTCAAATAGTTACACTTCAATTAGATGCATCTTTGGTCCAAA
TTTGGTGAAGTTTGGAAATGTATTTCTAATATTATAGCGATTTTTTTACG
ATTCATGACGTCATCAAATTGGATCAAATTTTGACGTCATAACAACAATT
TCTTTAATTATTAATTTTTGGGGTTATATTTAATTAGGTCACAAGATTCA
TAAACTTCAAGGTATAACCTTTGAGCCCTGAGTGGATCCCTACTTTACAT
AATGGCTGCTATTGATCGCAAAAACTTAGGGTAAATTGTTAGGTTTTTGA
GTCAAAATTTGACTTTGCAGAGAAAACCTTAAAAACCTAATGCTTTTTAT
TAAACTTAGGGTTAAAACTTTCTTGTTTTGTCTATATCAAGTTCGAAGAA
ACTGAAGTGAAAGTATTTGATTTGAATCACATTCAAATGGCAGAAACAAA
GCAGGGGCTAATCATACTTGCACAAAAGATAATAAGCAATGACAAAAGCA
ATCAGGTAAGGGCTTCTTAAAAGAATAATTGTTAAAATATAATTTTACTT
AGTTGGTATTATGAAGTAAGGCTTCACGAGGCGAAGCTCCAGAATACAAC
AATCAGAAAACATGTCTCCTCTTTTGTAGGCAAATGACCTTGTGAAACAT
AACTTTAATTACGCGCTTTTTTTATAAGAATGTTAGTGTGAGATTTTGGG
GTTAGAACAACATGTCTCCTCTTTTGTAGGCAAATGACCTCGTAAAACAT
AACTTTAATTACACGCTTTTTTTATAAAAATATCAGTGTGAGATTTTGGG
GTTAGAACAATAGGAAAATAAGAATAATGCTTCTCACCCTCAGCCAAAGT
ACACTTTGAAAAAAAGTGTGTATTTACTATAATATTTACTGGGTTTTCAG
TTGTTATCAATGATTTGTAAAAATCCGGAAGTGTTCCCAGTTTAAGCAAC
TCAATCTTGGACTTAAGCTTTTCCTCATTTTGCTTTATCCACACTAAATG
TGAAAATGAAATATATTCTATAAGGACAAAAGTTTGTGCTTCTATCTTCC
TACATTCCCTTACTAAAGTGTTTAGAATTTCTATTTGAGACCAGTATATT
AATTGATTGTTTTTAGACAGGTGAGATGGTCTATCGTGTGCAGTGGTATG
ACAGTATCATTCCTGAAAGCAATTTGAGAAAGATGTTTCCTGATTTACTC
AAAGAATATGAGTCAAAACAAAAGGTCAAGCCCAATCAAAAGGAGGGAGG
TGGAACGAAAAGTCATCATAAGGAATCTCAAAAGCATACTACCTTAATTC
CAAGTTCTCCTAAAAAAATTCTCCATAAAACATATTCTCAAGAACTTTCT
GCAAAAGAAGTATTGGCAAAAAAATTGATTCAGAAACAAAAAAATGCATC
TGGAACTGATGCGTTTCATTGTGATTTTTGTGAAAAGAAATTCAAGACAT
CAATTGATTTGAAATGTCATATTTATATTCATCAGTTTGCAAATGATCGA
ATTAAGGTTACAAAACCTGGAGTAAGAGAGGGCCCTTCTATAGCCCCAGT
TAAGTCGAACAAATCAAAAAGAAAGCCAACAAGAAAATATACACCATTAG
AAAAAACAAAATGTGATATATGTGGTAAAGAAGTAACTTCAAAGAGATTA
GAGTCACATAAAATTACTTATCATTTGAAAAATGGAAAATTTCCTTGTTC
TGAGTGTGAAAAGCGTTTTCAATGTAACAGGGATCTTCAAAGGCATGCAG
AAATACACAAAGATGGAAAGCTTGAGAAAACAAGCTGTGATATTTGTGGT
AAAATTTTAACAAAGAGGCATTTGGAGAATCATAAGAATCGTTTTCATTC
ACAAGGGGAATATACTTGCAAGAAGTGTAATAAAATATTCAAGCATCTTC
TTGACCTAGACTGGCATCTCAAGAAACCGTGCACTGAAACACCGAATGCT
GAGGAAACAAGCACTAGAAAATAGTGTAACAAAATATCCAATAGTATAAA
TGATTGAACATTTAATTTTAATTTTAATTTTGTTTGTAAAATTTTGTACA
TATTTAAGTATATAAGTAACCTTTGTATCAAAGCCAACTTGAGGGCAGGA
AAAGGCCCACTTATTCTTTCCCTGGATTTCTCCACTTACCATATCTTAAA
TTGCTGAAAATTAAGCAGAGAGGCAACCATTTTATGAATCTCTTGTATGA
CCCCCCTTGGGCTTGAACCTACAGCCTTGCACACTTTAATTGAATGCTCT
TTTGGGCTGTTGTAGTATATCCTTCAATTCAGCTTTTCGTTCTCTCAGCC
CTAACGGATAGTGATGACAATGTAACATAAGATTTTTAAACATAGTATTT
ATTGGGGGGGTTTGTACTTTTACGGTGTGACGGGATTGGCCCTTTTTTAG
TACGGTATCACGGGATTTGACGAAAAAAAGACGGGAAAACAACGGTATTT
TAAAATCAGACGGTGACGGTATTTAGGTACATTTTTGCCCTGTACAAGCC
GATGTGACGGTGTTATTATTTTTTCAATTTTCGGGATTCCGGGATTCAGC
AAAAAATTTGATGGGAAAACGGTATTTCAAACCCCTACATACCGCCCCCC
CCCCTTTATTGATATAGATTAAAATAGATCACATTATTTAGCATATTTTA
GGTACATATTATTTTTAATTTTTGTGCATAGAATTAAAACATGATTTTCA
GGCATGAAAAAAACTAAGTAAATAAGGCACAGACTATTTTAAACTATTTT
TGTAGGTTTTTTGTTTTATTTCAAAATTCACTATGAATTAACTTTTAGG Coding sequence (CDS) from alignment at sc0000005:769635..773983- >TCONS_00000833 ID=TCONS_00000833|Name=TCONS_00000833|organism=Clytia hemisphaerica|type=CDS|length=3276bp|location=Sequence derived from alignment at sc0000005:769635..773983- (Clytia hemisphaerica)
ACAGGTGAGATGGTCTATCGTGTGCAGTGGTATGACAGTATCATTCCTGA
AAGCAATTTGAGAAAGATGTTTCCTGATTTACTCAAAGAATATGAGTCAA
AACAAAAGGTCAAGCCCAATCAAAAGGAGGGAGGTGGAACGAAAAGTCAT
CATAAGGAATCTCAAAAGCATACTACCTTAATTCCAAGTTCTCCTAAAAA
AATTCTCCATAAAACATATTCTCAAGAACTTTCTGCAAAAGAAGTATTGG
CAAAAAAATTGATTCAGAAACAAAAAAATGCATCTGGAACTGATGCGTTT
CATTGTGATTTTTGTGAAAAGAAATTCAAGACATCAATTGATTTGAAATG
TCATATTTATATTCATCAGTTTGCAAATGATCGAATTAAGGTTACAAAAC
CTGGAGTAAGAGAGGGCCCTTCTATAGCCCCAGTTAAGTCGAACAAATCA
AAAAGAAAGCCAACAAGAAAATATACACCATTAGAAAAAACAAAATGTGA
TATATGTGGTAAAGAAGTAACTTCAAAGAGATTAGAGTCACATAAAATTA
CTTATCATTTGAAAAATGGAAAATTTCCTTGTTCTGAGTGTGAAAAGCGT
TTTCAATGTAACAGGGATCTTCAAAGGCATGCAGAAATACACAAAGATGG
AAAGCTTGAGAAAACAAGCTGTGATATTTGTGGTAAAATTTTAACAAAGA
GGCATTTGGAGAATCATAAGAATCGTTTTCATTCACAAGGGGAATATACT
TGCAAGAAGTGTAATAAAATATTCAAGCATCTTCTTGACCTAGACTGGCA
TCTCAAGAAACCGTGCACTGAAACACCGAATGCTGAGGAAACAAGCACTA
GAAAATAGTTCGAAGAAACTGAAGTGAAAGTATTTGATTTGAATCACATT
CAAATGGCAGAAACAAAGCAGGGGCTAATCATACTTGCACAAAAGATAAT
AAGCAATGACAAAAGCAATCAGAATTATGCATGTAAGTTTTATATTAGTA
CTATCTTTTCACATAGGTTTTACATTAAGGTTTTAGTACATTATTTTCCT
ATGAAATCTCATCACTGCAAATTATTTGTTGCCAGTTGTAAGACAGGTGA
GATGGTCTATCGTGTGCAGTGGTATGACAGTATCATTCCTGAAAGCAATT
TGAGAAAGATGTTTCCTGATTTACTCAAAGAATATGAGTCAAAACAAAAG
GTCAAGCCCAATCAAAAGGAGGGAGGTGGAACGAAAAGTCATCATAAGGA
ATCTCAAAAGCATACTACCTTAATTCCAAGTTCTCCTAAAAAAATTCTCC
ATAAAACATATTCTCAAGAACTTTCTGCAAAAGAAGTATTGGCAAAAAAA
TTGATTCAGAAACAAAAAAATGCATCTGGAACTGATGCGTTTCATTGTGA
TTTTTGTGAAAAGAAATTCAAGACATCAATTGATTTGAAATGTCATATTT
ATATTCATCAGTTTGCAAATGATCGAATTAAGGTTACAAAACCTGGAGTA
AGAGAGGGCCCTTCTATAGCCCCAGTTAAGTCGAACAAATCAAAAAGAAA
GCCAACAAGAAAATATACACCATTAGAAAAAACAAAATGTGATATATGTG
GTAAAGAAGTAACTTCAAAGAGATTAGAGTCACATAAAATTACTTATCAT
TTGAAAAATGGAAAATTTCCTTGTTCTGAGTGTGAAAAGCGTTTTCAATG
TAACAGGGATCTTCAAAGGCATGCAGAAATACACAAAGATGGAAAGCTTG
AGAAAACAAGCTGTGATATTTGTGGTAAAATTTTAACAAAGAGGCATTTG
GAGAATCATAAGAATCGTTTTCATTCACAAGGGGAATATACTTGCAAGAA
GTGTAATAAAATATTCAAGCATCTTCTTGACCTAGACTGGCATCTCAAGA
AACCGTGCACTGAAACACCGAATGCTGAGGAAACAAGCACTAGAAAATAG
TTCGAAGAAACTGAAGTGAAAGTATTTGATTTGAATCACATTCAAATGGC
AGAAACAAAGCAGGGGCTAATCATACTTGCACAAAAGATAATAAGCAATG
ACAAAAGCAATCAGAATTATGCATGTAAGTTTTATATTAGTACTATCTTT
TCACATAGGTTTTACATTAAGGTTTTAGTACATTATTTTCCTATGAAATC
TCATCACTGCAAATTATTTGTTGCCAGTTGTAAGACAGGTGAGATGGTCT
ATCGTGTGCAGTGGTATGACAGTATCATTCCTGAAAGCAATTTGAGAAAG
ATGTTTCCTGATTTACTCAAAGAATATGAGTCAAAACAAAAGGTCAAGCC
CAATCAAAAGGAGGGAGGTGGAACGAAAAGTCATCATAAGGAATCTCAAA
AGCATACTACCTTAATTCCAAGTTCTCCTAAAAAAATTCTCCATAAAACA
TATTCTCAAGAACTTTCTGCAAAAGAAGTATTGGCAAAAAAATTGATTCA
GAAACAAAAAAATGCATCTGGAACTGATGCGTTTCATTGTGATTTTTGTG
AAAAGAAATTCAAGACATCAATTGATTTGAAATGTCATATTTATATTCAT
CAGTTTGCAAATGATCGAATTAAGGTTACAAAACCTGGAGTAAGAGAGGG
CCCTTCTATAGCCCCAGTTAAGTCGAACAAATCAAAAAGAAAGCCAACAA
GAAAATATACACCATTAGAAAAAACAAAATGTGATATATGTGGTAAAGAA
GTAACTTCAAAGAGATTAGAGTCACATAAAATTACTTATCATTTGAAAAA
TGGAAAATTTCCTTGTTCTGAGTGTGAAAAGCGTTTTCAATGTAACAGGG
ATCTTCAAAGGCATGCAGAAATACACAAAGATGGAAAGCTTGAGAAAACA
AGCTGTGATATTTGTGGTAAAATTTTAACAAAGAGGCATTTGGAGAATCA
TAAGAATCGTTTTCATTCACAAGGGGAATATACTTGCAAGAAGTGTAATA
AAATATTCAAGCATCTTCTTGACCTAGACTGGCATCTCAAGAAACCGTGC
ACTGAAACACCGAATGCTGAGGAAACAAGCACTAGAAAATAGTTCGAAGA
AACTGAAGTGAAAGTATTTGATTTGAATCACATTCAAATGGCAGAAACAA
AGCAGGGGCTAATCATACTTGCACAAAAGATAATAAGCAATGACAAAAGC
AATCAGAATTATGCATGTAAGTTTTATATTAGTACTATCTTTTCACATAG
GTTTTACATTAAGGTTTTAGTACATTATTTTCCTATGAAATCTCATCACT
GCAAATTATTTGTTGCCAGTTGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000833-exon-sc0000005-1575043694:773862..773983 | TCONS_00000833-exon-sc0000005-1575043694:773862..773983 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1575043694:771929..772042 | TCONS_00000833-exon-sc0000005-1575043694:771929..772042 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1575043694:769635..771317 | TCONS_00000833-exon-sc0000005-1575043694:769635..771317 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1510915933:773862..773983 | TCONS_00000833-exon-sc0000005-1510915933:773862..773983 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1510915933:771929..772042 | TCONS_00000833-exon-sc0000005-1510915933:771929..772042 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1510915933:769635..771317 | TCONS_00000833-exon-sc0000005-1510915933:769635..771317 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1491911889:773862..773983 | TCONS_00000833-exon-sc0000005-1491911889:773862..773983 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1491911889:771929..772042 | TCONS_00000833-exon-sc0000005-1491911889:771929..772042 | Clytia hemisphaerica | exon |
| TCONS_00000833-exon-sc0000005-1491911889:769635..771317 | TCONS_00000833-exon-sc0000005-1491911889:769635..771317 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:769635..773983 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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