TCONS_00000827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000827
Unique NameTCONS_00000827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000827 ID=TCONS_00000827|Name=TCONS_00000827|organism=Clytia hemisphaerica|type=transcript|length=546bp
TCAGGTGCAAGGAGACAGTGACGATGAAATGGACATATCTAACGAAAACG
GCGAACAACAAACGCGTACGAAAACTAATAATGAACTCACGAAGACATGT
GCTATTATTAATGCGCTAACCTCCATATGGCCTGAAAATGCCCAAGAACA
AGAGAAAACTTGGGAATATGTAttcgaaaaattgaaaggtTTTTACAAGC
ATAGCAGCCGACAAGTAATCGAAGTTTTGATCGATGGACTGGCCAAAGTT
GTCGAAAGaaCTGACTTTGAAAACCTATATACCAAACTGAAAGGAGATAT
CAAAATGAAGTTGATCATCGATTTTATTATCTTGATGGTACCGTTGCTCC
TGGACACTCTTAATAATACATCAACGACGCAAAATATGAAGATCAAATCA
CTGAAGTGCACGAAAGTCTTATTAACAAAAACTCAAGACAAGAGAAACAT
TTTCGAAGGATTGCAAGAGTTCGATGAAGCCATTGTGAATGCTGTTCACA
AACTCCAAAACAAACATTCTGACATGGACAAACTCATTGATGCTAT
Run BLAST on NCBI

protein sequence of TCONS_00000827-protein

>TCONS_00000827-protein ID=TCONS_00000827-protein|Name=TCONS_00000827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
QVQGDSDDEMDISNENGEQQTRTKTNNELTKTCAIINALTSIWPENAQEQ
EKTWEYVFEKLKGFYKHSSRQVIEVLIDGLAKVVERTDFENLYTKLKGDI
KMKLIIDFIILMVPLLLDTLNNTSTTQNMKIKSLKCTKVLLTKTQDKRNI
FEGLQEFDEAIVNAVHKLQNKHSDMDKLIDA
Run BLAST on NCBI

transcript from alignment at sc0000005:679075..683916-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000827 ID=TCONS_00000827|Name=TCONS_00000827|organism=Clytia hemisphaerica|type=transcript|length=4842bp|location=Sequence derived from alignment at sc0000005:679075..683916- (Clytia hemisphaerica)
TCAGGTGCAAGGAGACAGTGACGATGAAATGGACATATCTAACGAAAACG
GCGAACAACAAACGCGTACGAAAACTAATAATGAACTCACGAAGACATGT
GCTATTATTAATGCGCTAACCTCCATATGGCCTGAAAATGCCCAAGAACA
AGGTTTGCTATGTATTCATTTAAGTTTTTTATTAGGAGGGTCTCATGATC
ATGGAGGAAGATTAGACCATGTTCACGCGCTACGGTTCCGTTTCGGAACA
TGGTTTAAGACGAATCGTTCCCAAATGCTAAAATGGATTTTGGTAAAAAA
GGAAGAATGGATACACCGACACAGACATCGTTGATCCCGACAAGCGTGGG
AGATCATGCGAGTGTTTATTCATGTGAGCAACATCACGACCCTAGATACA
ATGTCTTGGATACCTCCCGCACTCTTTTATCAGAGTATAGTACCCAATTC
CCCTCACATTGTATGGGTTGACCCGGGCGAAGGTACATTCGCTTGCCAAG
TGAATCGTAGCACCTGATCAGAATCGAACCCTGACCTCCCATTTTGGAGT
CAAGAACAATCACTGCTACTACTATACTACACTTCAAACTATTTTCGAGA
AAATGTCTTTTAACTCCCTTAGTCTCGAATCTTTAAATTCCTGTTTTCTG
TTTATAGAGAAAACTTGGGAATATGTATTCGAAAAATTGAAAGGTTTTTA
CAAGCATAGCAGCCGACAAGTAATCGAAGTTTTGATCGATGGACTGGCCA
AAGTTGTCGAAAGGTACCAAATCTTGATGATAAACGAATTTGCGACGTCT
GATGTCTGTTTACATGTTTTATGTTGCAGTTATCAAATTATACTCTGCTT
TAAGTAAGCTATTGCCGAATGTGTGGGGTTTATCTTATTTAATTTTCCTT
TTTTTCAGAACTGACTTTGAAAACCTATATACCAAACTGAAAGGAGATAT
CAAAATGAAGTTGATCATCGATTTTATTATCTTGATGGTACCGTTGCTCC
TGGACACTCTTAGTAAGTGATTTTGTAGACAGTTATCTCTTTCATTTACA
TCATTGCTTCATATTGATGCCTTAAGGTGACTTAAAGTTTCCCTGTTTTG
AATACGTTTTATTGCTCAAAGTCGACTAGATTTACCTAAAACTAAAAGAT
TGAAACATTTTTGGCAATCTTTCGTGTTAGAAAAGTGACTAAATTTTCCA
GAAATGACGAGCAATCACCCCCCCCCCTATAATAGCAATTGTAGCACTAA
TATATTCTCCATTATAAAATTCAGATAATACATCAACGACGCAAAATATG
AAGATCAAATCACTGAAGTGCACGAAAGTCTTATTAACAAAAACTCAAGG
TAAGAGGAATTCTTTATCATCAGTGTTTTCAGCCAGTTTTTAACAACCAC
CACCCCCCTAGTGATGCAATAACTTTAAAGAAACTTGTGGATTTGGACCT
AATTTTATATATTTGCAAAATAAAAAATATTCATTATACTACTAAATATG
TGACTCAATAATGCTCCATGAAGCCTCCAGTGAGCAGACCAAAAACATTT
TCAAAAATGGTTGTCACTTCATAAAGTCCTTGCGATTCGTAAGCAAAAAA
GCAAAATACTAATGCAATTAAAGCAAAGAGCATGACAAATATTTTCCACC
AACCATGTACATTCTCATGATCATTTTCGTTGGACAAATCTTCTTCATTG
CATTCATTGTCAATGGTAATTGATTGGGTAGCGTTAGATTGATCTTTTTG
TGGTGTGGCAGGAATGTCTTCTTGTGATGGTGTCTCACACTTGGTTATAT
CTTCTGCGCATGCGTCTTTGACGCAAGCTTCACCTCCTTCTTTGGTATTA
ATCTCGGCATCCCCTTTCGCAACGCAAACCTCGATGTTTGATTTACTCTT
CTTTCTCTTCTTCTTGTTCTTCTTCTTTGGTGATTTCACCTTCTCTTCTT
CACCACAACCTCCTTTTACAACCTTCGTTTTCACATTCTTAATAGATTCT
ACATACTTTTGGGTCGCTTCAAGCTTTGCCTTCAATTTGGCGATCTCTTC
GTCCTTACGAATGCACTGTAAAAATAAGGAATGGTTAAATTTTGCTATCA
AATTTTAAACAAATTTAATAGTAGTCGTGAAGCTTAAAGGACCTGCATTT
TTGGACAAAATATTCGAACAAAGGGGATTTCCCTGCAAGATTTTAAACAT
CACAAATGATTTATGAGTGTTTTAGTTTTCTTCTGGAATGTAGAGTTTTA
ACTCTGAGCTTTAACGTCATAACACATAGGTGGACTTTAGGATATAAGGA
TTCAAAAGCTCAAAATTGTTCAAATAAGGTAAGGGAATATAGCCTAGAAG
CCGTTGAATCCCTCCGAAATGGAAATATTCAATGAAATAAAGTTGAAGTA
CTAAAACCGCAATTCCCCGAACTCAAAATTCTTGAAAAAGGTTAGAATAC
GTGAAATTCTCAATATATTTCGACCATAGTCGTGGTAGTAGATTAACAAG
AAAGATCAATTCGATCGATTAGAAATAAAATTATTTGGGGTTAGGATACC
CATCGTTGATCAAAAGAAACTATATCCGTACCTCCTGTTTCCTCTCATCG
CGTTGTTTCAATAAAACATTGTTTGTAGACTTGAATTTGTTCAACTGTTT
CTCTTTTAACTCCAATTCAGTTTGGTGCTTTTGGACTGATTCTGACATTT
TCTTTTCATTTTTCATCAAGAATGAAATTTCCTCCGCCCTTCGACGTATT
TCGATATTCCGATGTTGGAGTTTGGTTTCAAAATCTTCAGCCTTAACAGA
GACAACAGACAACTTCTCGTTCTTTTTGTCTAACTCCACCATCCCTTGTT
TGACTTTCAAAGTCAAGTGCTCGACCTCTTCCTTCAAAGAATTCGCCAAT
GAAGACTTCGAATCTAATTCCTTTGTCAATGTCTCGTTTTTTTCTGCAGA
CATTGCTTGCTCATCATTGAATTTTTCTTTCAAGGTTCGAACACCTTGCT
CAACTTCCAAGTGTAGTTCTTTTATCTGTTGTTGAGCCAAACCGCATTGT
TTGCGCAATTTTGTAAGTTCAGATTCGTNCTTTCAAGGTTCGAACACCTT
GCTCAACTTCCAAGTGTAGTTCTTTTATCTGTTGTTGAGCCAAACCGCAT
TGTTTGCGCAATTTTGTTAGTTCAGATTCGTATTTGAGAGTCGATTCATC
GCGTGCATTTTTGAGTGACTGGATTTCAGATTGAAAACCCTTATTTTGTT
GGTGAAGTTGTGCATACTCGTCGGCTGTTCGTTGTAATGCTAACTTCAAA
TTATTATTCTCTTCTCTATAGTTTGTGTGTTCCTTTTGAACTTTCTCATA
TTCAATTCTGGTGAAGACTTTCTCTTCCATATTTTCACCAGGAACGATTC
CAAGAGCATTTTCAGTTACCTTTGATATTGAAAGAAACATATAATAGTTT
TCCATTTTGAACTATGAACATATACTGCAAATCTATCAGTAAATGTATGA
GTCAATTTCTACATACAAATAAAAGCCCTTGGTCAGCCGAGGAGAGAAGT
ATTTTTGAAGGTGCTTAAAGAGAATTAAAAATCTGGTCAACGTATAATTT
TTTCTAATCTAGCTCCTAAAATCAGAAAGTGTCTAGTTCGACGTTCCACT
AGTCGATACGCTTCATTATTCGATGATATTGAAAGTCGCCGTTAACAAGA
AACTCTCATAAACGACACTCTACTGCTCGATACCCTCCCTTATTCGATAA
AAATCTAATTCCCTTTGAAAATCGAATCAGAGAGCGTCAACTGTATATTT
TTCGAAAGGTGAAATACCTGATTAATCTCAGCATCGGTTGGGTTGTCTAT
AGTTTCTTCCACATCTACACGAGAAACTCTTTGGCGGCTAAACCGACGTA
CTCTAGCTTGACATTGCCAAGCTTCGTTCAAATCCTCTTTACTGAGCCTC
TTCTCAGCAACACCAATGTTGTCTCTTGATTGTTTTCCATCCAATTGTGA
ATCAGGAAATGTAAGAAAGTCATCCATTTTAAGCTGCGAATGTGGACGAT
ACAGGGTTTCGTTTGGTGATGAAGATTCAATAGATTCGTCATTTTTGTTG
TTATAAAACTTCTTTGAAAGGTGTGTCTTACTGCATTTTGCAAGATCATC
CCTCATCAATTGATTGGCTCGCCACTGCATGTTGAACCACGATTAATAAT
GATAAAGCAACAAGATATACCAAACAATTACAAAAAAATAGTCCAAATGA
CTTCTGAGCGTACCGCACGATTCAAATTCTAAGACTATATGAAAGAAGAT
TTTTCTGACGTCAAATATATCTGCGAAACATATTGACGTCAATTTTCCTT
GTCTTGCTTTTAAACGCTCTTGACATTTTATGTCTCGCTTATCCTGAGGA
GAAATACCTTTTGGCAATTTGAAAACAAGTCCTCGTATGCGTTATTTTGT
GTCTTTGACGGAATAAGGACCGGTGATTTCTGACCGTTTTTACTCAATTT
TTTGGGTACAGTAGGTTTAAAATAAGCCTTCAGAAAACCTCAACTACAGC
GGTGTGACTTTTCTTATTCACGTTATTCCGTGTGAGGAGTTTTCCTTGAT
TGTCACATGTGAAAAGTAGTCGTGCGAAATATTCTGATTTCTGATTTTAT
TGCATTTTCTTCCCGCAACCTACTAAAGGGGTCAGAGCTTTCCTTTCTAA
TTATACTTTTCTTTTTCTTCTCTGTTCTTTCAGACAAGAGAAACATTTTC
GAAGGATTGCAAGAGTTCGATGAAGCCATTGTGAATGCTGTTCACAAACT
CCAAAACAAACATTCTGACATGGACAAACTCATTGATGCTAT

Coding sequence (CDS) from alignment at sc0000005:679075..683916-

>TCONS_00000827 ID=TCONS_00000827|Name=TCONS_00000827|organism=Clytia hemisphaerica|type=CDS|length=2715bp|location=Sequence derived from alignment at sc0000005:679075..683916- (Clytia hemisphaerica)
ACAAGAGAAACATTTTCGAAGGATTGCAAGAGTTCGATGAAGCCATTGTG
AATGCTGTTCACAAACTCCAAAACAAACATTCTGACATGGACAAACTCAT
TGATGCTATAATACATCAACGACGCAAAATATGAAGATCAAATCACTGAA
GTGCACGAAAGTCTTATTAACAAAAACTCAAGAACTGACTTTGAAAACCT
ATATACCAAACTGAAAGGAGATATCAAAATGAAGTTGATCATCGATTTTA
TTATCTTGATGGTACCGTTGCTCCTGGACACTCTTAAGAAAACTTGGGAA
TATGTATTCGAAAAATTGAAAGGTTTTTACAAGCATAGCAGCCGACAAGT
AATCGAAGTTTTGATCGATGGACTGGCCAAAGTTGTCGAAAGCAGGTGCA
AGGAGACAGTGACGATGAAATGGACATATCTAACGAAAACGGCGAACAAC
AAACGCGTACGAAAACTAATAATGAACTCACGAAGACATGTGCTATTATT
AATGCGCTAACCTCCATATGGCCTGAAAATGCCCAAGAACAAGACAAGAG
AAACATTTTCGAAGGATTGCAAGAGTTCGATGAAGCCATTGTGAATGCTG
TTCACAAACTCCAAAACAAACATTCTGACATGGACAAACTCATTGATGCT
ATAATACATCAACGACGCAAAATATGAAGATCAAATCACTGAAGTGCACG
AAAGTCTTATTAACAAAAACTCAAGAACTGACTTTGAAAACCTATATACC
AAACTGAAAGGAGATATCAAAATGAAGTTGATCATCGATTTTATTATCTT
GATGGTACCGTTGCTCCTGGACACTCTTAAGAAAACTTGGGAATATGTAT
TCGAAAAATTGAAAGGTTTTTACAAGCATAGCAGCCGACAAGTAATCGAA
GTTTTGATCGATGGACTGGCCAAAGTTGTCGAAAGCAGGTGCAAGGAGAC
AGTGACGATGAAATGGACATATCTAACGAAAACGGCGAACAACAAACGCG
TACGAAAACTAATAATGAACTCACGAAGACATGTGCTATTATTAATGCGC
TAACCTCCATATGGCCTGAAAATGCCCAAGAACAAGACAAGAGAAACATT
TTCGAAGGATTGCAAGAGTTCGATGAAGCCATTGTGAATGCTGTTCACAA
ACTCCAAAACAAACATTCTGACATGGACAAACTCATTGATGCTATAATAC
ATCAACGACGCAAAATATGAAGATCAAATCACTGAAGTGCACGAAAGTCT
TATTAACAAAAACTCAAGAACTGACTTTGAAAACCTATATACCAAACTGA
AAGGAGATATCAAAATGAAGTTGATCATCGATTTTATTATCTTGATGGTA
CCGTTGCTCCTGGACACTCTTAAGAAAACTTGGGAATATGTATTCGAAAA
ATTGAAAGGTTTTTACAAGCATAGCAGCCGACAAGTAATCGAAGTTTTGA
TCGATGGACTGGCCAAAGTTGTCGAAAGCAGGTGCAAGGAGACAGTGACG
ATGAAATGGACATATCTAACGAAAACGGCGAACAACAAACGCGTACGAAA
ACTAATAATGAACTCACGAAGACATGTGCTATTATTAATGCGCTAACCTC
CATATGGCCTGAAAATGCCCAAGAACAAGACAAGAGAAACATTTTCGAAG
GATTGCAAGAGTTCGATGAAGCCATTGTGAATGCTGTTCACAAACTCCAA
AACAAACATTCTGACATGGACAAACTCATTGATGCTATAATACATCAACG
ACGCAAAATATGAAGATCAAATCACTGAAGTGCACGAAAGTCTTATTAAC
AAAAACTCAAGAACTGACTTTGAAAACCTATATACCAAACTGAAAGGAGA
TATCAAAATGAAGTTGATCATCGATTTTATTATCTTGATGGTACCGTTGC
TCCTGGACACTCTTAAGAAAACTTGGGAATATGTATTCGAAAAATTGAAA
GGTTTTTACAAGCATAGCAGCCGACAAGTAATCGAAGTTTTGATCGATGG
ACTGGCCAAAGTTGTCGAAAGCAGGTGCAAGGAGACAGTGACGATGAAAT
GGACATATCTAACGAAAACGGCGAACAACAAACGCGTACGAAAACTAATA
ATGAACTCACGAAGACATGTGCTATTATTAATGCGCTAACCTCCATATGG
CCTGAAAATGCCCAAGAACAAGACAAGAGAAACATTTTCGAAGGATTGCA
AGAGTTCGATGAAGCCATTGTGAATGCTGTTCACAAACTCCAAAACAAAC
ATTCTGACATGGACAAACTCATTGATGCTATAATACATCAACGACGCAAA
ATATGAAGATCAAATCACTGAAGTGCACGAAAGTCTTATTAACAAAAACT
CAAGAACTGACTTTGAAAACCTATATACCAAACTGAAAGGAGATATCAAA
ATGAAGTTGATCATCGATTTTATTATCTTGATGGTACCGTTGCTCCTGGA
CACTCTTAAGAAAACTTGGGAATATGTATTCGAAAAATTGAAAGGTTTTT
ACAAGCATAGCAGCCGACAAGTAATCGAAGTTTTGATCGATGGACTGGCC
AAAGTTGTCGAAAGCAGGTGCAAGGAGACAGTGACGATGAAATGGACATA
TCTAACGAAAACGGCGAACAACAAACGCGTACGAAAACTAATAATGAACT
CACGAAGACATGTGCTATTATTAATGCGCTAACCTCCATATGGCCTGAAA
ATGCCCAAGAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000496XLOC_000496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000827-exon-sc0000005-1575043694:683765..683916TCONS_00000827-exon-sc0000005-1575043694:683765..683916Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1575043694:683154..683259TCONS_00000827-exon-sc0000005-1575043694:683154..683259Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1575043694:682905..683008TCONS_00000827-exon-sc0000005-1575043694:682905..683008Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1575043694:682568..682642TCONS_00000827-exon-sc0000005-1575043694:682568..682642Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1575043694:679075..679183TCONS_00000827-exon-sc0000005-1575043694:679075..679183Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1510915933:683765..683916TCONS_00000827-exon-sc0000005-1510915933:683765..683916Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1510915933:683154..683259TCONS_00000827-exon-sc0000005-1510915933:683154..683259Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1510915933:682905..683008TCONS_00000827-exon-sc0000005-1510915933:682905..683008Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1510915933:682568..682642TCONS_00000827-exon-sc0000005-1510915933:682568..682642Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1510915933:679075..679183TCONS_00000827-exon-sc0000005-1510915933:679075..679183Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1491911889:683765..683916TCONS_00000827-exon-sc0000005-1491911889:683765..683916Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1491911889:683154..683259TCONS_00000827-exon-sc0000005-1491911889:683154..683259Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1491911889:682905..683008TCONS_00000827-exon-sc0000005-1491911889:682905..683008Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1491911889:682568..682642TCONS_00000827-exon-sc0000005-1491911889:682568..682642Clytia hemisphaericaexon
TCONS_00000827-exon-sc0000005-1491911889:679075..679183TCONS_00000827-exon-sc0000005-1491911889:679075..679183Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000827-proteinTCONS_00000827-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:679075..683916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.84289	6.26225	3.69514	1.63263	30.5234	26.1394	18.4073	25.4689	10.9117	17.1422	16.8519	9.88589	7.63166	13.3062	9.38526	13.9209	13.277	14.5805	6.93841	11.7106	6.92145	9.68129	14.3641	15.3636	34.3609	33.7934	14.4353	14.4814	21.4999	19.2859
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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