TCONS_00000820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000820
Unique NameTCONS_00000820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000820 ID=TCONS_00000820|Name=TCONS_00000820|organism=Clytia hemisphaerica|type=transcript|length=1295bp
GCTAAACTGTGTGTAACAAAAAAGTTTCCTGGGAGAAAGTCTCTTGTAGT
GTGGAAAAGAGCGTTTCAGCAAAATCCTTTACAACACTCCAGAGTGTTTG
GCTGCAGAGAATAGATCTGGTATCTTGTGTCAGGTGAACTTTAAGGAAAT
ATGAGTTTATCCGTAGTATTTTTCGCCTTGCTGTTGTATACATCATTGGG
ATTCATCTGCGCATGGTTCGTCTTAAGCAACTATAACCAATTTGTTGTAG
CCGTGAAGTCTCAAGCAATATCTCTATCAGTTAACAACACAGTGATGTCA
CAGAAAGTGACTTTCGATCAAACAGAGTATGAAATTTATGCAGATAATAC
ATATGAGGGGATTCTATGGAATAAAATAGGAATTATCTTGTTGAATGTTT
GGACTTCTATCGGACACTTGGGACTACTCGCCATACTCCAATTACGGGAC
AACACATTTTTGGACAAACCCGTTATTTTTCTGTTACAGCAAAGTCTTCT
AATGCAATTGGCATCTTTCATGACTTTGAATTGGAtctataaaaaattat
ttttacttccTTCTGGATACGATAGATGGTGGTGGTTCTCATATGATCTT
TTCAGCGGCTGGTGGGCTGCACGTCTTTTTGTAGCTTTGGTTATGTCGCA
ATTACTTTTACTGTTACTGTTTGTCTCGTTCGTATTTCGTCTACATGCTA
AAGCATATCGCGAAGCGAATAATGCATTCAACATATTCATATCTTTTGGA
TAATGGTAGATACTGGCTCCCGTTTATATCGATCACTCCTTTATTGAATG
TCCTTGCTGTcattttctttgataaaaatCTTCTCGGGAAGTTGGCTCGT
GTTTTCTTTATAATCGATAAGCGCATATGGCCATTGGTAAACAAATACCT
TTGCGCATGTAATCAAAATGACCATCACCGAGATAACGAGGCCCAAAGAC
CTCTGTTGACGAGTAATGATGACAATCATCAGATAGAGGGCCCAAGAGTT
GATTCAACCGATGGACCATCACGTCAACATCGAAATAATTCACGCGTACC
CGAAAGCAATAACAAGCTTTTGCCAATTCCTTATCATGATAGGGGACTTA
ATCAGAATTTTGATGGTATAGTAAAATCAGAGCTTAATTGTAGTGACATT
ACAAAGACAGATGATAAACGTCTTACTTTGTTAGCGCTTGCACAAGAATT
GGAAGTGAGTGTACATTCATGAGTAAActtattcaattattttttatatc
atatttcatatgatattttcgatttaaactttttaagaatatttt
Run BLAST on NCBI

protein sequence of TCONS_00000820-protein

>TCONS_00000820-protein ID=TCONS_00000820-protein|Name=TCONS_00000820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSLSVVFFALLLYTSLGFICAWFVLSNYNQFVVAVKSQAISLSVNNTVMS
QKVTFDQTEYEIYADNTYEGILWNKIGIILLNVWTSIGHLGLLAILQLRD
NTFLDKPVIFLLQQSLLMQLASFMTLNWIYKKLFLLPSGYDRWWWFSYDL
FSGWWAARLFVALVMSQLLLLLLFVSFVFRLHAKAYREANNAFNIFISFG
Run BLAST on NCBI

transcript from alignment at sc0000005:641850..643509-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000820 ID=TCONS_00000820|Name=TCONS_00000820|organism=Clytia hemisphaerica|type=transcript|length=1660bp|location=Sequence derived from alignment at sc0000005:641850..643509- (Clytia hemisphaerica)
GCTAAACTGTGTGTAACAAAAAAGTTTCCTGGGAGAAAGTCTCTTGTAGT
GTGGAAAAGAGCGTTTCAGCAAAATCCTTTACAACACTCCAGAGTGTTTG
GCTGCAGAGAATAGATCTGGTATCTTGTGTCAGGTGAACTTTAAGGAAAT
ATGAGTTTATCCGTAGTATTTTTCGCCTTGCTGTTGTATACATCATTGGG
ATTCATCTGCGCATGGTTCGTCTTAAGCAACTATAACCAATTTGTTGTAG
CCGTGAAGTCTCAAGCAATATCTCTATCAGTTAACAACACAGTGATGTCA
CAGAAAGTGACTTTCGATCAAACAGAGTATGAAATTTATGCAGATAATAC
ATATGAGGGGATTCTATGGAATAAAATAGGAATTATCTTGTTGAATGTTT
GGACTTCTATCGGACACTTGGGACTACTCGCCATACTCCAATTACGGGAC
AACACATTTTTGGACAAACCCGTTATTTTTCTGTTACAGCAAAGTCTTCT
AATGCAATTGGCATCTTTCATGACTTTGAATTGGATCTATAAAAAATTAT
TTTTACTTCCTTCTGGATACGATAGATGGTGGTGGTTCTCATATGATCTT
TTCAGCGGCTGGTGGGCTGCACGTCTTTTTGTAGCTTTGGTTATGTCGCA
ATTACTTTTACTGTTACTGTTTGTCTCGTTCGTATTTCGTCTACATGCTA
AAGCATATCGCGAAGCGAATAATGCATTCAACATATTCATATCTTTTGGA
TGTAAAATAATCATATTCATCATAGTTAACGGCATTGTTTCTGTTTATTA
CCCAGAGAGTTTTATTGTTACCGATTTCCTGTCCGCCATTTTGAACCCGG
CAATTATGTCAGGTATTCTCATCTCATTGGCTTTTGTTATGTTGACTTTA
CGCGTAACAAAATGGAGGAATCTTAACGTTAAATCATTAAGCAAGAAATC
TGTTTTGATACATTGCTTATTATCCTCATTTTACGGCGTTGGGACCATCT
ATTACGTGTCGAACTACATCTGTATCATTGATTACCAATCTTACCAATCT
TATTGTCATTATAACCAAGAGGAATGCGACCAGATAGCCGATCGAATAAA
TTCATCTTTCTTACAGAATGGTAGATACTGGCTCCCGTTTATATCGATCA
CTCCTTTATTGAATGTCCTTGCTGTCATTTTCTTTGATAAAAATCTTCTC
GGGAAGTTGGCTCGTGTTTTCTTTATAATCGATAAGCGCATATGGCCATT
GGTAAACAAATACCTTTGCGCATGTAATCAAAATGACCATCACCGAGATA
ACGAGGCCCAAAGACCTCTGTTGACGAGTAATGATGACAATCATCAGATA
GAGGGCCCAAGAGTTGATTCAACCGATGGACCATCACGTCAACATCGAAA
TAATTCACGCGTACCCGAAAGCAATAACAAGCTTTTGCCAATTCCTTATC
ATGATAGGGGACTTAATCAGAATTTTGATGGTATAGTAAAATCAGAGCTT
AATTGTAGTGACATTACAAAGACAGATGATAAACGTCTTACTTTGTTAGC
GCTTGCACAAGAATTGGAAGTGAGTGTACATTCATGAGTAAACTTATTCA
ATTATTTTTTATATCATATTTCATATGATATTTTCGATTTAAACTTTTTA
AGAATATTTT

Coding sequence (CDS) from alignment at sc0000005:641850..643509-

>TCONS_00000820 ID=TCONS_00000820|Name=TCONS_00000820|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000005:641850..643509- (Clytia hemisphaerica)
AAATGAGTTTATCCGTAGTATTTTTCGCCTTGCTGTTGTATACATCATTG
GGATTCATCTGCGCATGGTTCGTCTTAAGCAACTATAACCAATTTGTTGT
AGCCGTGAAGTCTCAAGCAATATCTCTATCAGTTAACAACACAGTGATGT
CACAGAAAGTGACTTTCGATCAAACAGAGTATGAAATTTATGCAGATAAT
ACATATGAGGGGATTCTATGGAATAAAATAGGAATTATCTTGTTGAATGT
TTGGACTTCTATCGGACACTTGGGACTACTCGCCATACTCCAATTACGGG
ACAACACATTTTTGGACAAACCCGTTATTTTTCTGTTACAGCAAAGTCTT
CTAATGCAATTGGCATCTTTCATGACTTTGAATTGGATCTATAAAAAATT
ATTTTTACTTCCTTCTGGATACGATAGATGGTGGTGGTTCTCATATGATC
TTTTCAGCGGCTGGTGGGCTGCACGTCTTTTTGTAGCTTTGGTTATGTCG
CAATTACTTTTACTGTTACTGTTTGTCTCGTTCGTATTTCGTCTACATGC
TAAAGCATATCGCGAAGCGAATAATGCATTCAACATATTCATATCTTTTG
GATAAATGAGTTTATCCGTAGTATTTTTCGCCTTGCTGTTGTATACATCA
TTGGGATTCATCTGCGCATGGTTCGTCTTAAGCAACTATAACCAATTTGT
TGTAGCCGTGAAGTCTCAAGCAATATCTCTATCAGTTAACAACACAGTGA
TGTCACAGAAAGTGACTTTCGATCAAACAGAGTATGAAATTTATGCAGAT
AATACATATGAGGGGATTCTATGGAATAAAATAGGAATTATCTTGTTGAA
TGTTTGGACTTCTATCGGACACTTGGGACTACTCGCCATACTCCAATTAC
GGGACAACACATTTTTGGACAAACCCGTTATTTTTCTGTTACAGCAAAGT
CTTCTAATGCAATTGGCATCTTTCATGACTTTGAATTGGATCTATAAAAA
ATTATTTTTACTTCCTTCTGGATACGATAGATGGTGGTGGTTCTCATATG
ATCTTTTCAGCGGCTGGTGGGCTGCACGTCTTTTTGTAGCTTTGGTTATG
TCGCAATTACTTTTACTGTTACTGTTTGTCTCGTTCGTATTTCGTCTACA
TGCTAAAGCATATCGCGAAGCGAATAATGCATTCAACATATTCATATCTT
TTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000491XLOC_000491Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000820-proteinTCONS_00000820-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000820-exon-sc0000005-1575043694:642759..643509TCONS_00000820-exon-sc0000005-1575043694:642759..643509Clytia hemisphaericaexon
TCONS_00000820-exon-sc0000005-1575043694:641850..642393TCONS_00000820-exon-sc0000005-1575043694:641850..642393Clytia hemisphaericaexon
TCONS_00000820-exon-sc0000005-1510915933:642759..643509TCONS_00000820-exon-sc0000005-1510915933:642759..643509Clytia hemisphaericaexon
TCONS_00000820-exon-sc0000005-1510915933:641850..642393TCONS_00000820-exon-sc0000005-1510915933:641850..642393Clytia hemisphaericaexon
TCONS_00000820-exon-sc0000005-1491911889:642759..643509TCONS_00000820-exon-sc0000005-1491911889:642759..643509Clytia hemisphaericaexon
TCONS_00000820-exon-sc0000005-1491911889:641850..642393TCONS_00000820-exon-sc0000005-1491911889:641850..642393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:641850..643509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0136572	0.38313	0.0223788	0	0.0738609	0	0.659356	1.64602	0.607663	1.03679	1.19904	0.673361	0.895557	0.247577	0.467	0.292343	0.245596	0.137732	0	0.179801	0.0447947	0	0.258546	0.064423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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