TCONS_00000818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000818
Unique NameTCONS_00000818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000818 ID=TCONS_00000818|Name=TCONS_00000818|organism=Clytia hemisphaerica|type=transcript|length=638bp
ttttgagaaaaaatccatcacgaatttgaaaatcatgtcattaaaattga
taagaacaaaggaaaacaATAGGTGTTGTTTCACaaaatattcaagaaaa
taatcagCATAAATAGAAGGAGTGTGATATGGAAGAACATCATCAAACGG
AACATCATCCACCAAGCATTGAAAGAACAATCAAGCCAAGAAAAtttcaa
TCATGAAGCTTTTCATCGTTACCGCCTTGTTGGTTTTAGCCACCGTCGCC
GATGCTCAGTACTGCGATGGGTTTTGTCTTACATCTAGAGATTGCTCATG
GATGGATGGATGCGAATGCAATCCCTTCTTAAGACGCTGTGTACCATATT
TCAAAGATGAAGGATTGAACAAGAGAGATATCTGCTCAGGCTATTGTCGT
TCATCTACAGGTTGCTCAAAAGAATGCAAATGCAATACCTTCGTTAACCG
CTGTGTACCGCTTTTTTAAAGGTGTCGGTCAACACGTACACCTACCCCAC
ATCCTGACGACATATCAATTTGATCTTAATGATTtatcttattttctttt
ttgtagtATTTGAGGTGGACTAAAATAGAACTATGAACAAAATAACCATT
CAATTTCACTCATTATTTCCCCTCTTACCCGAAACTCT
Run BLAST on NCBI

transcript from alignment at sc0000005:618296..619999-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000818 ID=TCONS_00000818|Name=TCONS_00000818|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at sc0000005:618296..619999- (Clytia hemisphaerica)
TTTTGAGAAAAAATCCATCACGAATTTGAAAATCATGTCATTAAAATTGA TAAGAACAAAGGAAAACAATAGGTGTTGTTTCACAAAATATTCAAGAAAA TAATCAGCATAAATAGAAGGAGTGTGATATGGAAGAACATCATCAAACGG AACATCATCCACCAAGCATTGAAAGAACAATCAAGCCAAGAAAAGTAAGT TCATTTAAGTATTAATAAGGCGTTTTTGAAATATTGAAACACCATCACTA TTTCAATGAGACTTTACAAGAACAAGAGGTCAATTCTCAAAGTCCGGGGT TACTAGGGTTGACTAGAGTTGAGGCTATGTACAGATGAGACCCCTGAAGT GAGATCCGATCATTGGTGAGACTATTTTTTGGCAAATTTTACAAACGTTT TACCGTTAAAAAGCGACCCTTACAAAGGCTTTTTGAGATATTTGGCCTCA AATTTCATAAACTTTGACCCTTACCATTTTTGCTCAAGTATCTCCCGGGT CTCAAAGAAGAAAGAGTTCTGTTAAATGTCACAGTTATTTTTCTTTTTTT CTTTAGTTTCAATCATGAAGCTTTTCATCGTTACCGCCTTGTTGGTTTTA GCCACCGTCGCCGATGCTCAGTACTGCGATGGGTTTTGTCTTACATCTAG AGATTGCTCATGGATGGATGGATGCGAATGCAATCCCTTCTTAAGACGCT GTGTACCATATTTCAAAGATGAAGGATTGAACAAGAGAGATATCTGCTCA GGCTATTGTCGTTCATCTACAGGTTGCTCAAAAGAATGCAAATGCAATAC CTTCGNATCAGCATAAATAGAAGGAGTGTGATATGGAAGAACATCATCAA ACGGAACATCATCCACCAAGCATTGAAAGAACAATCAAGCCAAGAAAAGT AAGTTCATTTAAGTATTAATAAGGCGTTTTTGAAATATTGAAACACCATC ACTATTTCAATGAGACTTTACAAGAACAAGAGGTCAATTCTCAAAGTCCG GGGTTACTAGGGTTGACTAGAGTTGAGGCTATGTACAGATGAGACCCCTG AAGTGAGATCCGATCATTGGTGAGACTATTTTTTGGCAAATTTTACAAAC GTTTTACCGTTAAAAAGTGACCCTTACAAAGGCTTTTTGAGATATTTGGC CTCAAATTTCATAAACTTTGACCCTTACCATTTTTGCTCAAGTATCTCCC TGGTCTCAAAGAAGAAAGAGTTCGATTAAATATCACAGTTAACTTTCTTT TTTTCTTTAGTTTCAAGCATGAAGCTTTTCATCGTTACCGCCTTGTTGGT TTTAGCCACCGTCGCCGATGCTCAGTACTGCGATGGGTTTTGTCTTACAT CTAGAGATTGCTCATGGATGGATGGATGCGAATGCAATCCCTTCTTAAGA CGCTGTGTACCATATTTCAAAGATGAAGGATTGAACAAGAGAGATATCTG CTCAGGCTATTGTCGTTCATCTACAGGTTGCTCAAAAGAATGCAAATGCA ATACCTTCGTTAACCGCTGTGTACCGCTTTTTTAAAGGTGTCGGTCAACA CGTACACCTACCCCACATCCTGACGACATATCAATTTGATCTTAATGATT TATCTTATTTTCTTTTTTGTAGTATTTGAGGTGGACTAAAATAGAACTAT GAACAAAATAACCATTCAATTTCACTCATTATTTCCCCTCTTACCCGAAA CTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000490XLOC_000490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000818-exon-sc0000005-1575043694:619806..619999TCONS_00000818-exon-sc0000005-1575043694:619806..619999Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1575043694:619413..619443TCONS_00000818-exon-sc0000005-1575043694:619413..619443Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1575043694:618296..618708TCONS_00000818-exon-sc0000005-1575043694:618296..618708Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1510915933:619806..619999TCONS_00000818-exon-sc0000005-1510915933:619806..619999Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1510915933:619413..619443TCONS_00000818-exon-sc0000005-1510915933:619413..619443Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1510915933:618296..618708TCONS_00000818-exon-sc0000005-1510915933:618296..618708Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1491911889:619806..619999TCONS_00000818-exon-sc0000005-1491911889:619806..619999Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1491911889:619413..619443TCONS_00000818-exon-sc0000005-1491911889:619413..619443Clytia hemisphaericaexon
TCONS_00000818-exon-sc0000005-1491911889:618296..618708TCONS_00000818-exon-sc0000005-1491911889:618296..618708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:618296..619999 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.322577 0 0 0 0 3.93209 1.26185 95.4382 19.362 103.648 209.494 83.0012 95.576 1400.88 1212.5 80.8923 84.2483 33.2302 14.0748 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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