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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000813 ID=TCONS_00000813|Name=TCONS_00000813|organism=Clytia hemisphaerica|type=transcript|length=1068bp
gccttttgttgaaattttttgcTGATGGCTACAAGTAAAATATTTGATGA
ACAAGTGCTATAAAATTAGCATCAAAATACACAAACCTTGAATAGAATTT
CTACATAACTAATGCGAAAGAaaacgaaagaaagaaaatttcaatttccc
aCAAAAGGAGAGTTAGGAATGACCATATAAGGATTGTTTTGAACAAAACC
AAGTTTCTGGCACGGTGTTTTTCCAAAGATGGATGAGAATCTATAAAGTG
TGGTGCAAAGAATTGATAAATCATTCCTTCATTGCTTTTGTTTCTGTCAT
CTAAAATTAAAAGgcaAAAGATCGTGAGAAATGAAGACATCCTTGGCGTT
TTTGTTCGCTGTTTTGGCTTGTGCAAGCGCGACCAACCTTTTGAGAGTGA
GGACAATCACAAGAGTGTACACATCTTCATATCGAATCATCAAGACACCA
GAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTGTGGTGGGAACCT
TGCTACCATCACAAACCCAAGTGATCATGCTTATTTGGCTGCTCAATTGA
AaaaGATGAATATCAAGTCTGCATTTGTTGGTTTGAAcgactttaaaaaa
gaaaagacctTTGTATGGGCAGCCGGTAGTTCCGCTTTTGGTGGAAGATC
TGGCTACAAAAAATGGTGCCCCAAAGAACCAAACAACTTTCGAAACGAGG
ATTGTACGGAACTCATTGCCAACCATAAAGCAGGACCCTGTTTGAACGAC
CTCCGCTGTTCATTCCCAAGTCACAAACGAGGATATATTTGCGAGATCAA
TGCCAGCAAGACAACACAAGATGTACTTGTTTAGGAGAATATCCTTGTAC
TAcatttaattttgttttattgttgCTGGACGTAGAACGTTTTTTAGTAT
CTTTTTGGTTTGtcctttttggcctttttttaggatttttattgttttct
ttcacaGGTCTTGGTCTtgccattttttcatttttggggtaatttattta
ttttattcataACTAATATATTCACGAATTCATGCATATCCTTGTACTTT
TCATGGTTTATtctgaac Run BLAST on NCBI transcript from alignment at sc0000005:485723..488296- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000813 ID=TCONS_00000813|Name=TCONS_00000813|organism=Clytia hemisphaerica|type=transcript|length=2574bp|location=Sequence derived from alignment at sc0000005:485723..488296- (Clytia hemisphaerica)
GCCTTTTGTTGAAATTTTTTGCTGATGGCTACAAGTAAAATATTTGATGA
ACAAGTGCTATAAAATTAGCATCAAAATACACAAACCTTGAATAGAATTT
CTACATAACTAATGCGAAAGAAAACGAAAGAAAGAAAATTTCAATTTCCC
ACAAAAGGAGAGTTAGGAATGACCATATAAGGATTGTTTTGAACAAAACC
AAGTTTCTGGCACGGTGTTTTTCCAAAGATGGATGAGAATCTATAAAGTG
TGGTGCAAAGAATTGATAAATCATTCCTTCATTGCTTTTGTTTCTGTCAT
CTAAAATTAAAAGGTAAGCAGTGTTATTTTATACTTCTTTACTTCAATTT
CAATGTTACATCGACCATTATGTTAGTCTTACCCGAGAGTTATTTTGATT
TTCTTTTTCAGGCAAAAGATCGTGAGAAATGAAGACATCCTTGGCGTTTT
TGTTCGCTGTTTTGGCTTGTGCAAGCGCGACCAGTAAATTATTTTGTTCC
TAAACTACCTTTCATGAACTCTTTCACCTTTTCCCTTCTTTTTCCTGACA
AATGATGCCAGAACCACGAGTATGGCTGTACCATTTAATATCTATACAGG
GGATGGACGTACTTTTTCTGAGGACTTATTTCTTGAAAATATATCCAAAA
AAAATGGAAAAATGGATATAAATTTAACTAAGTTGTACCTTATTCCTCCT
AATTGTACCTTATTCCTCGAAACTTCCTTGGCGGAAAACTTCTGCTCGTC
CATCCCCTTTGTATGCATATAAAATGGATTGACCAAATCTGAAGACACTT
TAATTATCAATACACGGGTTTCGAATTAAATCTGGCGCGAGAGAAAAAAT
CAAGTAAATAAAAGGAGCGATAAGGGGATATGCCTTATAAAAGGTTGATA
GATTTCCTTTCTTCTCTTTTGAAAGCCAGGTGTTCATTCAAAAGATGTTT
TTCTATTTTAAATTCAATAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGCTTGATA
CACGGCCAATTTTCGTTCTGTTTACTTGATATTTTTCGTGCAAATTTACA
TGGGATCAAAGCTAAAGCTAAGCAAAAATTTAATTCGAAACCGGTGTATT
GTTTCCTCTCATTCGATACACGTTTTTTTTTTTAAGAAACTAGTTTTACC
AAGCAGTCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTT
TCTTACATGTTTCTAAATTTTTTAACATAATCAGCCTCATGGAAGGCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATTAA
AAAATGTTATTTTCTCATTCTCAGCCTCAGTATGTTTCTTAGATGTTTCT
TAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTTA
AAAAAAAAAAAACGTGTATCGATCATTTGATGTTCCTTATATTGCAGACC
TTTTGAGAGTGAGGACAATCACAAGAGTGTACACATCTTCATATCGAATC
ATCAAGACACCAGAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTG
TGGTGGGAACCTTGCTACCATCACAAACCCAAGTGATCATGCTTATTTGG
CTGCTCAATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAATGAAAAT
TCCGAGTTACTTTTTAAAAGCCCATTTGTCGGCCTTACCAATTCGTTTTG
CCATGCTGTTGGAAATAATTTTCGTATGAGGTTTCGTATAAAGCTGGCAT
ATTTTCTGAATTCATTTAAAGTTCGGTTGCTTAACTTTCTCAGAGACAAT
TTTATTTAAAAAACTTCTAAGGTAGCTCTCTTCCAATGACACTTTTTTTT
ACTTTAGAAAGATGAATATCAAGTCTGCATTTGTTGGTTTGAACGACTTT
AAAAAAGAAAAGACCTTTGTATGGGCAGCCGGTAGTTCCGCTTTTGGTGG
AAGATCTGGCTACAAAAAATGGTGCCCCAAAGAACCAAACAACTTTCGAA
ACGAGGATTGTACGGAACTCATTGCCAACCATAAAGCAGGACCCTGTTTG
AACGACCTCCGCTGTTCATTCCCAAGTCACAAACGAGGATATATTTGCGA
GATCAATGCCAGCAAGACAACACAAGATGTACTTGTTTAGGAGAATATCC
TTGTACTACATTTAATTTTGTTTTATTGTTGCTGGACGTAGAACGTTTTT
TAGTATCTTTTTGGTTTGTCCTTTTTGGCCTTTTTTTAGGATTTTTATTG
TTTTCTTTCACAGGTCTTGGTCTTGCCATTTTTTCATTTTTGGGGTAATT
TATTTATTTTATTCATAACTAATATATTCACGAATTCATGCATATCCTTG
TACTTTTCATGGTTTATTCTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000813-exon-sc0000005-1575043694:487984..488296 | TCONS_00000813-exon-sc0000005-1575043694:487984..488296 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1575043694:487814..487885 | TCONS_00000813-exon-sc0000005-1575043694:487814..487885 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1575043694:486484..486649 | TCONS_00000813-exon-sc0000005-1575043694:486484..486649 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1575043694:485723..486239 | TCONS_00000813-exon-sc0000005-1575043694:485723..486239 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1510915933:487984..488296 | TCONS_00000813-exon-sc0000005-1510915933:487984..488296 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1510915933:487814..487885 | TCONS_00000813-exon-sc0000005-1510915933:487814..487885 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1510915933:486484..486649 | TCONS_00000813-exon-sc0000005-1510915933:486484..486649 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1510915933:485723..486239 | TCONS_00000813-exon-sc0000005-1510915933:485723..486239 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1491911889:487984..488296 | TCONS_00000813-exon-sc0000005-1491911889:487984..488296 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1491911889:487814..487885 | TCONS_00000813-exon-sc0000005-1491911889:487814..487885 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1491911889:486484..486649 | TCONS_00000813-exon-sc0000005-1491911889:486484..486649 | Clytia hemisphaerica | exon |
| TCONS_00000813-exon-sc0000005-1491911889:485723..486239 | TCONS_00000813-exon-sc0000005-1491911889:485723..486239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:485723..488296 - |
Blast
The following BLAST results are available for this feature:
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