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TCONS_00000813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000813
Unique NameTCONS_00000813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1068

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000813 ID=TCONS_00000813|Name=TCONS_00000813|organism=Clytia hemisphaerica|type=transcript|length=1068bp
gccttttgttgaaattttttgcTGATGGCTACAAGTAAAATATTTGATGA
ACAAGTGCTATAAAATTAGCATCAAAATACACAAACCTTGAATAGAATTT
CTACATAACTAATGCGAAAGAaaacgaaagaaagaaaatttcaatttccc
aCAAAAGGAGAGTTAGGAATGACCATATAAGGATTGTTTTGAACAAAACC
AAGTTTCTGGCACGGTGTTTTTCCAAAGATGGATGAGAATCTATAAAGTG
TGGTGCAAAGAATTGATAAATCATTCCTTCATTGCTTTTGTTTCTGTCAT
CTAAAATTAAAAGgcaAAAGATCGTGAGAAATGAAGACATCCTTGGCGTT
TTTGTTCGCTGTTTTGGCTTGTGCAAGCGCGACCAACCTTTTGAGAGTGA
GGACAATCACAAGAGTGTACACATCTTCATATCGAATCATCAAGACACCA
GAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTGTGGTGGGAACCT
TGCTACCATCACAAACCCAAGTGATCATGCTTATTTGGCTGCTCAATTGA
AaaaGATGAATATCAAGTCTGCATTTGTTGGTTTGAAcgactttaaaaaa
gaaaagacctTTGTATGGGCAGCCGGTAGTTCCGCTTTTGGTGGAAGATC
TGGCTACAAAAAATGGTGCCCCAAAGAACCAAACAACTTTCGAAACGAGG
ATTGTACGGAACTCATTGCCAACCATAAAGCAGGACCCTGTTTGAACGAC
CTCCGCTGTTCATTCCCAAGTCACAAACGAGGATATATTTGCGAGATCAA
TGCCAGCAAGACAACACAAGATGTACTTGTTTAGGAGAATATCCTTGTAC
TAcatttaattttgttttattgttgCTGGACGTAGAACGTTTTTTAGTAT
CTTTTTGGTTTGtcctttttggcctttttttaggatttttattgttttct
ttcacaGGTCTTGGTCTtgccattttttcatttttggggtaatttattta
ttttattcataACTAATATATTCACGAATTCATGCATATCCTTGTACTTT
TCATGGTTTATtctgaac
Run BLAST on NCBI

transcript from alignment at sc0000005:485723..488296-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000813 ID=TCONS_00000813|Name=TCONS_00000813|organism=Clytia hemisphaerica|type=transcript|length=2574bp|location=Sequence derived from alignment at sc0000005:485723..488296- (Clytia hemisphaerica)
GCCTTTTGTTGAAATTTTTTGCTGATGGCTACAAGTAAAATATTTGATGA ACAAGTGCTATAAAATTAGCATCAAAATACACAAACCTTGAATAGAATTT CTACATAACTAATGCGAAAGAAAACGAAAGAAAGAAAATTTCAATTTCCC ACAAAAGGAGAGTTAGGAATGACCATATAAGGATTGTTTTGAACAAAACC AAGTTTCTGGCACGGTGTTTTTCCAAAGATGGATGAGAATCTATAAAGTG TGGTGCAAAGAATTGATAAATCATTCCTTCATTGCTTTTGTTTCTGTCAT CTAAAATTAAAAGGTAAGCAGTGTTATTTTATACTTCTTTACTTCAATTT CAATGTTACATCGACCATTATGTTAGTCTTACCCGAGAGTTATTTTGATT TTCTTTTTCAGGCAAAAGATCGTGAGAAATGAAGACATCCTTGGCGTTTT TGTTCGCTGTTTTGGCTTGTGCAAGCGCGACCAGTAAATTATTTTGTTCC TAAACTACCTTTCATGAACTCTTTCACCTTTTCCCTTCTTTTTCCTGACA AATGATGCCAGAACCACGAGTATGGCTGTACCATTTAATATCTATACAGG GGATGGACGTACTTTTTCTGAGGACTTATTTCTTGAAAATATATCCAAAA AAAATGGAAAAATGGATATAAATTTAACTAAGTTGTACCTTATTCCTCCT AATTGTACCTTATTCCTCGAAACTTCCTTGGCGGAAAACTTCTGCTCGTC CATCCCCTTTGTATGCATATAAAATGGATTGACCAAATCTGAAGACACTT TAATTATCAATACACGGGTTTCGAATTAAATCTGGCGCGAGAGAAAAAAT CAAGTAAATAAAAGGAGCGATAAGGGGATATGCCTTATAAAAGGTTGATA GATTTCCTTTCTTCTCTTTTGAAAGCCAGGTGTTCATTCAAAAGATGTTT TTCTATTTTAAATTCAATAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGCTTGATA CACGGCCAATTTTCGTTCTGTTTACTTGATATTTTTCGTGCAAATTTACA TGGGATCAAAGCTAAAGCTAAGCAAAAATTTAATTCGAAACCGGTGTATT GTTTCCTCTCATTCGATACACGTTTTTTTTTTTAAGAAACTAGTTTTACC AAGCAGTCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTT TCTTACATGTTTCTAAATTTTTTAACATAATCAGCCTCATGGAAGGCTNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATTAA AAAATGTTATTTTCTCATTCTCAGCCTCAGTATGTTTCTTAGATGTTTCT TAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTTA AAAAAAAAAAAACGTGTATCGATCATTTGATGTTCCTTATATTGCAGACC TTTTGAGAGTGAGGACAATCACAAGAGTGTACACATCTTCATATCGAATC ATCAAGACACCAGAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTG TGGTGGGAACCTTGCTACCATCACAAACCCAAGTGATCATGCTTATTTGG CTGCTCAATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAATGAAAAT TCCGAGTTACTTTTTAAAAGCCCATTTGTCGGCCTTACCAATTCGTTTTG CCATGCTGTTGGAAATAATTTTCGTATGAGGTTTCGTATAAAGCTGGCAT ATTTTCTGAATTCATTTAAAGTTCGGTTGCTTAACTTTCTCAGAGACAAT TTTATTTAAAAAACTTCTAAGGTAGCTCTCTTCCAATGACACTTTTTTTT ACTTTAGAAAGATGAATATCAAGTCTGCATTTGTTGGTTTGAACGACTTT AAAAAAGAAAAGACCTTTGTATGGGCAGCCGGTAGTTCCGCTTTTGGTGG AAGATCTGGCTACAAAAAATGGTGCCCCAAAGAACCAAACAACTTTCGAA ACGAGGATTGTACGGAACTCATTGCCAACCATAAAGCAGGACCCTGTTTG AACGACCTCCGCTGTTCATTCCCAAGTCACAAACGAGGATATATTTGCGA GATCAATGCCAGCAAGACAACACAAGATGTACTTGTTTAGGAGAATATCC TTGTACTACATTTAATTTTGTTTTATTGTTGCTGGACGTAGAACGTTTTT TAGTATCTTTTTGGTTTGTCCTTTTTGGCCTTTTTTTAGGATTTTTATTG TTTTCTTTCACAGGTCTTGGTCTTGCCATTTTTTCATTTTTGGGGTAATT TATTTATTTTATTCATAACTAATATATTCACGAATTCATGCATATCCTTG TACTTTTCATGGTTTATTCTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000486XLOC_000486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000813-exon-sc0000005-1575043694:487984..488296TCONS_00000813-exon-sc0000005-1575043694:487984..488296Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1575043694:487814..487885TCONS_00000813-exon-sc0000005-1575043694:487814..487885Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1575043694:486484..486649TCONS_00000813-exon-sc0000005-1575043694:486484..486649Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1575043694:485723..486239TCONS_00000813-exon-sc0000005-1575043694:485723..486239Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1510915933:487984..488296TCONS_00000813-exon-sc0000005-1510915933:487984..488296Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1510915933:487814..487885TCONS_00000813-exon-sc0000005-1510915933:487814..487885Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1510915933:486484..486649TCONS_00000813-exon-sc0000005-1510915933:486484..486649Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1510915933:485723..486239TCONS_00000813-exon-sc0000005-1510915933:485723..486239Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1491911889:487984..488296TCONS_00000813-exon-sc0000005-1491911889:487984..488296Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1491911889:487814..487885TCONS_00000813-exon-sc0000005-1491911889:487814..487885Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1491911889:486484..486649TCONS_00000813-exon-sc0000005-1491911889:486484..486649Clytia hemisphaericaexon
TCONS_00000813-exon-sc0000005-1491911889:485723..486239TCONS_00000813-exon-sc0000005-1491911889:485723..486239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:485723..488296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.743411 0.585513 0.70145 0.834599 0.716921 0.264075 9.55595 8.17775 339.886 71.8812 306.928 396.259 22.0306 17.9479 99.7497 81.1914 4.91983 4.77382 3.26131 1.80872 1.00244 0.739061 12.2935 4.57218 4.07958 5.02961 0.874688 1.40009 55.2838 64.5384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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