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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000812 ID=TCONS_00000812|Name=TCONS_00000812|organism=Clytia hemisphaerica|type=transcript|length=1137bpRun BLAST on NCBI protein sequence of TCONS_00000812-protein >TCONS_00000812-protein ID=TCONS_00000812-protein|Name=TCONS_00000812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp MKKLSSADASKILKNINTFFFDCDGVLWNTFGTLPKAKETIDKLKALNKQRun BLAST on NCBI transcript from alignment at sc0000005:482373..495789- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000812 ID=TCONS_00000812|Name=TCONS_00000812|organism=Clytia hemisphaerica|type=transcript|length=13417bp|location=Sequence derived from alignment at sc0000005:482373..495789- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:482373..495789- >TCONS_00000812 ID=TCONS_00000812|Name=TCONS_00000812|organism=Clytia hemisphaerica|type=CDS|length=8880bp|location=Sequence derived from alignment at sc0000005:482373..495789- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000812 vs. Swiss-Prot (Human)
Match: PGP (Glycerol-3-phosphate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.069e-54 Identity = 108/299 (36.12%), Postives = 169/299 (56.52%), Query Frame = 2
Query: 53 SSADASKILKNINTFFFDCDGVLWNTFGTLPKAKETIDKLKALNKQIFFVTNNNTKSREGFLKKL-----LDNGFPVQADQVLSTSYLAAAYVKNILKMPENKKVYMIGMPGLLDELKLMNINTIGIGPR----ENTADML-VTKEPDVGAVVVGYDNHFCLTKVSEALQYLQDPEIPFIVTNTDNRYPVKPXXXXXXXXXXXXXXXXXXERQPIVLGKPHKMFLEVAQTTCDIDPSTSIMIGDRLNTDIHFGRNCGFQTLCVLTGITSSSAL---QKAESDGNTNFIPDYFSDDLTTL 910
S+ A +L +++T FDCDGVLW +P A E + L+A K++ F+TNN++K+R + +KL P + +V T+Y A Y++ L K Y++G P L EL+ + + ++G+GP E D L EPDV AVVVG+D HF K+++AL+YLQ P + TN DNR P++ G F AGTG +V AV A+RQ ++GKP + + I+P ++M+GDRL+TDI G CG +T+ LTG+++ + Q+++ +PD++ D + L
Sbjct: 17 SAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMKLTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFIFDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSKKKMVPDFYVDSIADL 315 The following BLAST results are available for this feature:
BLAST of TCONS_00000812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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