TCONS_00000809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000809
Unique NameTCONS_00000809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000809 ID=TCONS_00000809|Name=TCONS_00000809|organism=Clytia hemisphaerica|type=transcript|length=806bp
GTGAGAATCTATATAAAGTGTGGTGCAAAGAATCGATAAATCATTCCTTC
ATTGCTTTTGTTTCTGTCATCTAAATTTAAAAGgcaAAAGATCGTGAACA
ATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCAC
GACCAACCTTTTGAGATTAAGGACAATCACGAGGACAATCACGAGAGTGT
ACGCATCTTCATATCACATCATCAAGACACCAGAATTATGGATCAATGCA
CAAAAGAAATGTAAAGCTTGTGGCGGGAACCTTGCTACCATCACAAACCC
AAATGATCATGCTTATTTGGCTGCTCAATTGAAaaaGATGAATATCAAGT
CTGCATGGGTTGGTTTGAACGACATTAAAACAGAAAAGACCTTTGTATGG
GTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCTGGTTACAAAAAATGGTG
CCCCAAAGAACCTAACAACAAAGGAAACGAGGATTGTGTGGAACTCGTTG
CCAACCATAGTAGTGCAGGACCCTGTTTGAACGACCTCCGTTGTTCATTT
CCAACAAACAAACGAGGATATATTTGCGAGATCATTGCCAGCAAGACAAC
ACATGATGTAACTATTTAGGAGAATATCCTTGTACTTTTAATGGTTTATT
CTGAAAAACATATTTCTTTCATTTCCTTGAATGAATTCTAACAATATTTT
CttgtttgtcattcaattccgtTCGGATTTATCAGATCTGTAGAAAATCT
CCATGCACGAGTAAGTTCATTACGCGAGGTTTCGTGAAATTGGGAGTTTc
taaaac
Run BLAST on NCBI

protein sequence of TCONS_00000809-protein

>TCONS_00000809-protein ID=TCONS_00000809-protein|Name=TCONS_00000809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MKTSLAFLFAVLACASTTNLLRLRTITRTITRVYASSYHIIKTPELWINA
QKKCKACGGNLATITNPNDHAYLAAQLKKMNIKSAWVGLNDIKTEKTFVW
VAGSSAFGGKSGYKKWCPKEPNNKGNEDCVELVANHSSAGPCLNDLRCSF
PTNKRGYICEIIASKTTHDVTI
Run BLAST on NCBI

transcript from alignment at sc0000005:479764..481306-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000809 ID=TCONS_00000809|Name=TCONS_00000809|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at sc0000005:479764..481306- (Clytia hemisphaerica)
GTGAGAATCTATATAAAGTGTGGTGCAAAGAATCGATAAATCATTCCTTC
ATTGCTTTTGTTTCTGTCATCTAAATTTAAAAGGTAAGCAGTGTTTTTTT
ATACTTCTTTACTTCAATTTCAATGTTACATCGACCATTATGTTAGTCTT
CTTACCCGAGAGTTATTTTGATTTTCTTTTTCAGGCAAAAGATCGTGAAC
AATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCA
CGACCAGTAAATTATTTTGTTCCTAAACTACCTTTCATGAACTCTTTTAC
CATTTCCCTTCTTTTTCATTACAAACGATGCTAGAAACACGAGTATGGCT
GTACCATTTAATATCTATACAGGGGACGAGGTTCGAAAAATGAACACTAC
GTGGGACTCGTTTTTTCAAAAATTTTGCCGAAATTTGCGAAAAAAGTTAC
CTTGAAAGATTTTCTCAAAATCTTTCTATTTTGGTGTTTTTGCGCGGGTT
TTTTGGGATTTGTAGAGGTTAGAAAAGGTACCCTGACCACCGGCGCACCC
CCCTTAACCCATATATGCATATACAATGGATTGACCAAATCTGTACGTGT
AGACACTTAAATTATCTACTGTTTCTTCTCCATTTGATGCAGACCTTTTG
AGATTAAGGACAATCACGAGGACAATCACGAGAGTGTACGCATCTTCATA
TCACATCATCAAGACACCAGAATTATGGATCAATGCACAAAAGAAATGTA
AAGCTTGTGGCGGGAACCTTGCTACCATCACAAACCCAAATGATCATGCT
TATTTGGCTGCTCAATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAA
TGAAAATTCCGAGTTACTTTTCAAAAGCCCATTTGTCGGCCTTACCAATT
CGTTTTGCCATGCTGTTGGAAATGATTTTCGTATGAGGTTTCGTATAAAG
CTGGTATATTTTCTGAATTCATTTAAAGTTCGGTTGCTTTACTTTCTCAG
AGATTTTTTTTTGACTTTATTAAAAAACTTCTATGGTAGCTGTCTTACAA
TGACACTTTTTTTACTTTAGAAAGATGAATATCAAGTCTGCATGGGTTGG
TTTGAACGACATTAAAACAGAAAAGACCTTTGTATGGGTAGCCGGTAGTT
CCGCTTTTGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCT
AACAACAAAGGAAACGAGGATTGTGTGGAACTCGTTGCCAACCATAGTAG
TGCAGGACCCTGTTTGAACGACCTCCGTTGTTCATTTCCAACAAACAAAC
GAGGATATATTTGCGAGATCATTGCCAGCAAGACAACACATGATGTAACT
ATTTAGGAGAATATCCTTGTACTTTTAATGGTTTATTCTGAAAAACATAT
TTCTTTCATTTCCTTGAATGAATTCTAACAATATTTTCTTGTTTGTCATT
CAATTCCGTTCGGATTTATCAGATCTGTAGAAAATCTCCATGCACGAGTA
AGTTCATTACGCGAGGTTTCGTGAAATTGGGAGTTTCTAAAAC

Coding sequence (CDS) from alignment at sc0000005:479764..481306-

>TCONS_00000809 ID=TCONS_00000809|Name=TCONS_00000809|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at sc0000005:479764..481306- (Clytia hemisphaerica)
AAAGATGAATATCAAGTCTGCATGGGTTGGTTTGAACGACATTAAAACAG
AAAAGACCTTTGTATGGGTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCT
GGTTACAAAAAATGGTGCCCCAAAGAACCTAACAACAAAGGAAACGAGGA
TTGTGTGGAACTCGTTGCCAACCATAGTAGTGCAGGACCCTGTTTGAACG
ACCTCCGTTGTTCATTTCCAACAAACAAACGAGGATATATTTGCGAGATC
ATTGCCAGCAAGACAACACATGATGTAACTATTTAGACCTTTTGAGATTA
AGGACAATCACGAGGACAATCACGAGAGTGTACGCATCTTCATATCACAT
CATCAAGACACCAGAATTATGGATCAATGCACAAAAGAAATGTAAAGCTT
GTGGCGGGAACCTTGCTACCATCACAAACCCAAATGATCATGCTTATTTG
GCTGCTCAATTGAAATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTG
GCTTGTGCAAGCACGACCAAAAGATGAATATCAAGTCTGCATGGGTTGGT
TTGAACGACATTAAAACAGAAAAGACCTTTGTATGGGTAGCCGGTAGTTC
CGCTTTTGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCTA
ACAACAAAGGAAACGAGGATTGTGTGGAACTCGTTGCCAACCATAGTAGT
GCAGGACCCTGTTTGAACGACCTCCGTTGTTCATTTCCAACAAACAAACG
AGGATATATTTGCGAGATCATTGCCAGCAAGACAACACATGATGTAACTA
TTTAGACCTTTTGAGATTAAGGACAATCACGAGGACAATCACGAGAGTGT
ACGCATCTTCATATCACATCATCAAGACACCAGAATTATGGATCAATGCA
CAAAAGAAATGTAAAGCTTGTGGCGGGAACCTTGCTACCATCACAAACCC
AAATGATCATGCTTATTTGGCTGCTCAATTGAAATGAAGACATCCTTGGC
GTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCACGACCAAAAGATGAATAT
CAAGTCTGCATGGGTTGGTTTGAACGACATTAAAACAGAAAAGACCTTTG
TATGGGTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCTGGTTACAAAAAA
TGGTGCCCCAAAGAACCTAACAACAAAGGAAACGAGGATTGTGTGGAACT
CGTTGCCAACCATAGTAGTGCAGGACCCTGTTTGAACGACCTCCGTTGTT
CATTTCCAACAAACAAACGAGGATATATTTGCGAGATCATTGCCAGCAAG
ACAACACATGATGTAACTATTTAGACCTTTTGAGATTAAGGACAATCACG
AGGACAATCACGAGAGTGTACGCATCTTCATATCACATCATCAAGACACC
AGAATTATGGATCAATGCACAAAAGAAATGTAAAGCTTGTGGCGGGAACC
TTGCTACCATCACAAACCCAAATGATCATGCTTATTTGGCTGCTCAATTG
AAATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGC
ACGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000486XLOC_000486Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000809-proteinTCONS_00000809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000809-exon-sc0000005-1575043694:481224..481306TCONS_00000809-exon-sc0000005-1575043694:481224..481306Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1575043694:481051..481122TCONS_00000809-exon-sc0000005-1575043694:481051..481122Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1575043694:480487..480664TCONS_00000809-exon-sc0000005-1575043694:480487..480664Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1575043694:479764..480236TCONS_00000809-exon-sc0000005-1575043694:479764..480236Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1510915933:481224..481306TCONS_00000809-exon-sc0000005-1510915933:481224..481306Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1510915933:481051..481122TCONS_00000809-exon-sc0000005-1510915933:481051..481122Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1510915933:480487..480664TCONS_00000809-exon-sc0000005-1510915933:480487..480664Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1510915933:479764..480236TCONS_00000809-exon-sc0000005-1510915933:479764..480236Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1491911889:481224..481306TCONS_00000809-exon-sc0000005-1491911889:481224..481306Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1491911889:481051..481122TCONS_00000809-exon-sc0000005-1491911889:481051..481122Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1491911889:480487..480664TCONS_00000809-exon-sc0000005-1491911889:480487..480664Clytia hemisphaericaexon
TCONS_00000809-exon-sc0000005-1491911889:479764..480236TCONS_00000809-exon-sc0000005-1491911889:479764..480236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:479764..481306 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190397	0	0	0	0	0	0.382012	0.214581	10.5689	2.25609	12.9658	13.3863	28.5093	42.7383	6.93476	7.91988	1.42756	1.14313	188.393	112.485	0.308639	0	8.45883	2.60177	0.319019	0	0.488915	0.176039	34.8603	40.547
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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