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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000809 ID=TCONS_00000809|Name=TCONS_00000809|organism=Clytia hemisphaerica|type=transcript|length=806bp GTGAGAATCTATATAAAGTGTGGTGCAAAGAATCGATAAATCATTCCTTC ATTGCTTTTGTTTCTGTCATCTAAATTTAAAAGgcaAAAGATCGTGAACA ATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCAC GACCAACCTTTTGAGATTAAGGACAATCACGAGGACAATCACGAGAGTGT ACGCATCTTCATATCACATCATCAAGACACCAGAATTATGGATCAATGCA CAAAAGAAATGTAAAGCTTGTGGCGGGAACCTTGCTACCATCACAAACCC AAATGATCATGCTTATTTGGCTGCTCAATTGAAaaaGATGAATATCAAGT CTGCATGGGTTGGTTTGAACGACATTAAAACAGAAAAGACCTTTGTATGG GTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCTGGTTACAAAAAATGGTG CCCCAAAGAACCTAACAACAAAGGAAACGAGGATTGTGTGGAACTCGTTG CCAACCATAGTAGTGCAGGACCCTGTTTGAACGACCTCCGTTGTTCATTT CCAACAAACAAACGAGGATATATTTGCGAGATCATTGCCAGCAAGACAAC ACATGATGTAACTATTTAGGAGAATATCCTTGTACTTTTAATGGTTTATT CTGAAAAACATATTTCTTTCATTTCCTTGAATGAATTCTAACAATATTTT CttgtttgtcattcaattccgtTCGGATTTATCAGATCTGTAGAAAATCT CCATGCACGAGTAAGTTCATTACGCGAGGTTTCGTGAAATTGGGAGTTTc taaaac Run BLAST on NCBI protein sequence of TCONS_00000809-protein >TCONS_00000809-protein ID=TCONS_00000809-protein|Name=TCONS_00000809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MKTSLAFLFAVLACASTTNLLRLRTITRTITRVYASSYHIIKTPELWINA QKKCKACGGNLATITNPNDHAYLAAQLKKMNIKSAWVGLNDIKTEKTFVW VAGSSAFGGKSGYKKWCPKEPNNKGNEDCVELVANHSSAGPCLNDLRCSF PTNKRGYICEIIASKTTHDVTI Run BLAST on NCBI transcript from alignment at sc0000005:479764..481306- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000809 ID=TCONS_00000809|Name=TCONS_00000809|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at sc0000005:479764..481306- (Clytia hemisphaerica) GTGAGAATCTATATAAAGTGTGGTGCAAAGAATCGATAAATCATTCCTTC
ATTGCTTTTGTTTCTGTCATCTAAATTTAAAAGGTAAGCAGTGTTTTTTT
ATACTTCTTTACTTCAATTTCAATGTTACATCGACCATTATGTTAGTCTT
CTTACCCGAGAGTTATTTTGATTTTCTTTTTCAGGCAAAAGATCGTGAAC
AATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCA
CGACCAGTAAATTATTTTGTTCCTAAACTACCTTTCATGAACTCTTTTAC
CATTTCCCTTCTTTTTCATTACAAACGATGCTAGAAACACGAGTATGGCT
GTACCATTTAATATCTATACAGGGGACGAGGTTCGAAAAATGAACACTAC
GTGGGACTCGTTTTTTCAAAAATTTTGCCGAAATTTGCGAAAAAAGTTAC
CTTGAAAGATTTTCTCAAAATCTTTCTATTTTGGTGTTTTTGCGCGGGTT
TTTTGGGATTTGTAGAGGTTAGAAAAGGTACCCTGACCACCGGCGCACCC
CCCTTAACCCATATATGCATATACAATGGATTGACCAAATCTGTACGTGT
AGACACTTAAATTATCTACTGTTTCTTCTCCATTTGATGCAGACCTTTTG
AGATTAAGGACAATCACGAGGACAATCACGAGAGTGTACGCATCTTCATA
TCACATCATCAAGACACCAGAATTATGGATCAATGCACAAAAGAAATGTA
AAGCTTGTGGCGGGAACCTTGCTACCATCACAAACCCAAATGATCATGCT
TATTTGGCTGCTCAATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAA
TGAAAATTCCGAGTTACTTTTCAAAAGCCCATTTGTCGGCCTTACCAATT
CGTTTTGCCATGCTGTTGGAAATGATTTTCGTATGAGGTTTCGTATAAAG
CTGGTATATTTTCTGAATTCATTTAAAGTTCGGTTGCTTTACTTTCTCAG
AGATTTTTTTTTGACTTTATTAAAAAACTTCTATGGTAGCTGTCTTACAA
TGACACTTTTTTTACTTTAGAAAGATGAATATCAAGTCTGCATGGGTTGG
TTTGAACGACATTAAAACAGAAAAGACCTTTGTATGGGTAGCCGGTAGTT
CCGCTTTTGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCT
AACAACAAAGGAAACGAGGATTGTGTGGAACTCGTTGCCAACCATAGTAG
TGCAGGACCCTGTTTGAACGACCTCCGTTGTTCATTTCCAACAAACAAAC
GAGGATATATTTGCGAGATCATTGCCAGCAAGACAACACATGATGTAACT
ATTTAGGAGAATATCCTTGTACTTTTAATGGTTTATTCTGAAAAACATAT
TTCTTTCATTTCCTTGAATGAATTCTAACAATATTTTCTTGTTTGTCATT
CAATTCCGTTCGGATTTATCAGATCTGTAGAAAATCTCCATGCACGAGTA
AGTTCATTACGCGAGGTTTCGTGAAATTGGGAGTTTCTAAAAC Coding sequence (CDS) from alignment at sc0000005:479764..481306- >TCONS_00000809 ID=TCONS_00000809|Name=TCONS_00000809|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at sc0000005:479764..481306- (Clytia hemisphaerica) AAAGATGAATATCAAGTCTGCATGGGTTGGTTTGAACGACATTAAAACAG AAAAGACCTTTGTATGGGTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCT GGTTACAAAAAATGGTGCCCCAAAGAACCTAACAACAAAGGAAACGAGGA TTGTGTGGAACTCGTTGCCAACCATAGTAGTGCAGGACCCTGTTTGAACG ACCTCCGTTGTTCATTTCCAACAAACAAACGAGGATATATTTGCGAGATC ATTGCCAGCAAGACAACACATGATGTAACTATTTAGACCTTTTGAGATTA AGGACAATCACGAGGACAATCACGAGAGTGTACGCATCTTCATATCACAT CATCAAGACACCAGAATTATGGATCAATGCACAAAAGAAATGTAAAGCTT GTGGCGGGAACCTTGCTACCATCACAAACCCAAATGATCATGCTTATTTG GCTGCTCAATTGAAATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTG GCTTGTGCAAGCACGACCAAAAGATGAATATCAAGTCTGCATGGGTTGGT TTGAACGACATTAAAACAGAAAAGACCTTTGTATGGGTAGCCGGTAGTTC CGCTTTTGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCTA ACAACAAAGGAAACGAGGATTGTGTGGAACTCGTTGCCAACCATAGTAGT GCAGGACCCTGTTTGAACGACCTCCGTTGTTCATTTCCAACAAACAAACG AGGATATATTTGCGAGATCATTGCCAGCAAGACAACACATGATGTAACTA TTTAGACCTTTTGAGATTAAGGACAATCACGAGGACAATCACGAGAGTGT ACGCATCTTCATATCACATCATCAAGACACCAGAATTATGGATCAATGCA CAAAAGAAATGTAAAGCTTGTGGCGGGAACCTTGCTACCATCACAAACCC AAATGATCATGCTTATTTGGCTGCTCAATTGAAATGAAGACATCCTTGGC GTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCACGACCAAAAGATGAATAT CAAGTCTGCATGGGTTGGTTTGAACGACATTAAAACAGAAAAGACCTTTG TATGGGTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCTGGTTACAAAAAA TGGTGCCCCAAAGAACCTAACAACAAAGGAAACGAGGATTGTGTGGAACT CGTTGCCAACCATAGTAGTGCAGGACCCTGTTTGAACGACCTCCGTTGTT CATTTCCAACAAACAAACGAGGATATATTTGCGAGATCATTGCCAGCAAG ACAACACATGATGTAACTATTTAGACCTTTTGAGATTAAGGACAATCACG AGGACAATCACGAGAGTGTACGCATCTTCATATCACATCATCAAGACACC AGAATTATGGATCAATGCACAAAAGAAATGTAAAGCTTGTGGCGGGAACC TTGCTACCATCACAAACCCAAATGATCATGCTTATTTGGCTGCTCAATTG AAATGAAGACATCCTTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGC ACGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000809-exon-sc0000005-1575043694:481224..481306 | TCONS_00000809-exon-sc0000005-1575043694:481224..481306 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1575043694:481051..481122 | TCONS_00000809-exon-sc0000005-1575043694:481051..481122 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1575043694:480487..480664 | TCONS_00000809-exon-sc0000005-1575043694:480487..480664 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1575043694:479764..480236 | TCONS_00000809-exon-sc0000005-1575043694:479764..480236 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1510915933:481224..481306 | TCONS_00000809-exon-sc0000005-1510915933:481224..481306 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1510915933:481051..481122 | TCONS_00000809-exon-sc0000005-1510915933:481051..481122 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1510915933:480487..480664 | TCONS_00000809-exon-sc0000005-1510915933:480487..480664 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1510915933:479764..480236 | TCONS_00000809-exon-sc0000005-1510915933:479764..480236 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1491911889:481224..481306 | TCONS_00000809-exon-sc0000005-1491911889:481224..481306 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1491911889:481051..481122 | TCONS_00000809-exon-sc0000005-1491911889:481051..481122 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1491911889:480487..480664 | TCONS_00000809-exon-sc0000005-1491911889:480487..480664 | Clytia hemisphaerica | exon |
TCONS_00000809-exon-sc0000005-1491911889:479764..480236 | TCONS_00000809-exon-sc0000005-1491911889:479764..480236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000005 | supercontig | sc0000005:479764..481306 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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