TCONS_00000785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000785
Unique NameTCONS_00000785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000785 ID=TCONS_00000785|Name=TCONS_00000785|organism=Clytia hemisphaerica|type=transcript|length=3899bp
GTAGACAACCTGAAGTTTTGATATCATTTATCGATATCCGTcacttgtga
aaatttcaagtcaccAGCACTTTCAATCCTGAGATCCGAGGCTAAATTAC
AAAGCTTGTAGACAATTGCTGTAAAAATTTTCACTAATTTGCTGGGATTT
GCCTAATAAAAGAGATTGGGGTCCAAGATTGGTATAATCTGCTTCCCGAA
ACTTTTTTTCAGTGTTCTGTTTTCTGTTTTTCCACTGATCTTTTTTGATA
GATAGATATGTCTTCCATAGGTCATAAGCATTCGGGAAAATTGGGTCGAG
ActcaatatgcttagcaaaatctcataTTCAGCCTAAATTTATTTCTATA
CTGTATATGCTTAGAGTTCGATTCGTCGATTTTCTTTGGGTTAaggaaaa
tttcgaatttttgagTCGGAGCATTGATTTGGATGTAGAATTTGGCGCCG
CAGGTGAAAAATTTGGTCTAGAAAGCTGAAACATCTCTAAAAgtacagta
aaacctccaatTAACTGACACTCTTTAGAGGcagacacctctgattagcg
gacatgATCTTTACACGAAATGACCGAAACCCTACTTTTTCCTTTCCAAT
TGGCGGACATTCAAAATGGTCAAAGACTTTTTTAACAGGGGCCTCAAGAC
TACTATTattcataaaaactaaattgcTGCATTTGAATAATCATTCTTtt
gtataccgagtttatcgttctacatctgcaatctgagctttactaagctc
atttgacgtcaatcgatacttTGATTATCAGCCGGATTAAGAGAGAATTA
TatatgagtgaaggtagagagtctatcactaTATatccctaacaccctgc
ctggaagagcttgggattcgaacacagtccattgcgttgaaagtctgtga
tcgaaaccttcacactaccaatcggatagactctctaccttcactcataa
ATCATTCTTTTGTTCTTCCGTGTCCTTATTGTCTCTAGAAAAGTACTTCG
GACCAAAGTTTTACATTTACTTAACCCCTTAATAATACCTTTTACCAAAA
TTAGAGTACAGAATtgaaaagtttccaaaaggAGGACACTTCCAATGAGC
GGACACTGACACTTTCTTGATGGTGGCCGCTAGTTTGAGGTTTCATTGCA
ACCCTAAAAAGaACGACATTCAAACTTACTAATACTTGTGATACTGGTCG
ATATGTCAGGATTTCCATCATCATTCAAAAACCAAGTCCAATATGAACCC
GGTGAAGACTAAAACAAAGCATCTGTTGGTATTCTTCGTTGCTGCTTCCC
ATCCGTTCGTTTTCTATCTTATCTCGGGAGACATCTCTTCGGTTGGATTT
GTCATTAGTACCCTAGTGGTGTTGTGAAAATTTTGGCATTTAATCTTGAA
GTAGACAAGTAGCTTGTTGATAGAAAACTTCAATAAGATCACTATTATGG
CGGTCATTTTTGGACACAGACTTTGGATTGGAAGTAAGATTTACCACCCG
GTTATCAAAACTACATACCGTCCGGAAATAAGGAAGTTGTTAGACTTCAC
TGGTAGAACTTTAAATTGTTAAGAACGCTCTCTTGAAAAGATTAgaccat
ggaattattatagacactggaaaaacaagggctgatttttgccaatttct
cgtgtacaagccttgtccgcagtaatgacattattgttcaccccacagat
ctgtaaagcccgaagggctagataagcaacttttatcgaaaagtgaagcc
taggtttggaaggatttccaacCAAAGTCCACCAtccttccaccattaaa
tgatttttcgtagaattttaattgcatttctaaatcatcaaaatacactt
atccaattcccaaatgagccTTTCCTCCGAGATTCAAATTCATCTTGTTA
ATTACTAATTAaacgtcgttatgacgttttaaatctcgagaaaaatgcaa
aaacatgctatgtgtataagaaattgaatattgacaccagaaatttttaa
acttcaacctaaaaaaatccaccgtgccaccacgtgccccaaaaagattt
tcataccacagatGAGACTCACGTCtgatataccgggtgacccaagAAAA
AGTTCGGACAGTTTTCGTTGGCTAGGGGctgaaataaaagtaatataaac
tcaatcttttttttttaagatagaaGATGCTCTTTCTTAAactttgagct
attactttttaaatttggctcagTGGTTCTTCGACCTCATTAATTAGTGT
TGTGGGTAAttaaagtttgtaaaataatgaattaacaacgaagtagattt
atataaatttattgtaaatatttttatcaaaaatattctgCAAATAAGCA
AAATTTGCCTTCTCTGTGAAAATGCCGTGTCTTATGAAAGATCAGAGATT
GTGGGTTTGCCTGGAATATGCTAGAAAGTCTATAACTTGttaataaattt
tgtgaaagtaaagaatctaaaaaaagtttgaaaattgaataaaaatgtct
AACATCCTCTTTTCTAACGATTTAACGAccttgattgattgattaataat
aaaacaatttgatacctcattttttatgtaatttcgctctttccgaaaag
tgaattttgactttaaaagctcataagtagggaACTAGtaggtcaaattt
aaaaagtaatagctcaaactttaagttagaatatctactttctaCATATT
AAAACTTCAAGCACTTTgtgacatttgttcggcctcgagACGCCGAAaac
cgtccgaactttttcgtgggtcacccggtacagtatgtcaatctcagctc
ttctcggagaaatattggaaaaatattcccaattcgaaatttcgtgtcat
tataagcattttgtttgattcaaCTCGtctgatgatttttttctcacaga
TGTATCCatttggtattctagcatttatcTTCAAACTTTTGGCCATCAAA
AGTTAGACAACTTTATAGAAATAAGagaattaatcatttttcaaaatcag
agtccttcgagccgccatgacagttgttctttgcggacaaagcctgtaca
ttgattgttttctgaaacaatagaaaaacaAATCTTCGCTCTTCACCGTT
ttattcgatgtttatccagggTCTCTATAATAAATACATGATTAGACTGA
GACGACACTTTAACCGACGTTACTTTcaaatttgttaaaatatttttata
taaatataTATTGAGTAAGTTTAATGTGATTGGAAGAATTTTATTCTGTT
TGGTACGGTATAGTCTTTCTCAACATATTTTCAGTACAAGGATTTATCTT
ATCAAATAGAAAACTAATTTGTGATTTATCTTAgtaatttgacaaagatt
ttgCCCTCCCCCACCCCTCAAATTGACCGGGAACAAGCTTTAGTCGGGAA
AATCTTAGTGCCTCCCTAATCCCTAAAACTATTAGTCAGTTATCACATGA
TATTCATTCCCGGATAATGTAACTTTTTTGAGTGAGTCACCACAAACCGG
GACATAATTTTTacctatttttatttctttcctaAAAGTTATCATTTTTC
ACGTTATGATTTTTGGAATAAACGACTCAATATCGAAGGAAGTGACCTCT
CCAAAGGCTATAtctcactagtccgacactttcttgTCCGACAACAAGGC
AGTACGAAAATGGAATTAGCCCGAAAGTATCTCTACGCCGAAAAATGTCG
TATgatctttttataattttacaaGTCTCTTACTTTATTTGCTGGCCAAC
ACCAACGTTAAGACACCACTCATCGTcgcttcaaattttctttttttcac
aaTCATCTCTCCAACTTTTAACCCTAATCAGTGAACCCTCTCCCTCCCAC
AACaattgtatttttcaaattgcGACTCAAGAACAAATATATTTACAAG
Run BLAST on NCBI

transcript from alignment at sc0000005:357498..361977-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000785 ID=TCONS_00000785|Name=TCONS_00000785|organism=Clytia hemisphaerica|type=transcript|length=4480bp|location=Sequence derived from alignment at sc0000005:357498..361977- (Clytia hemisphaerica)
GTAGACAACCTGAAGTTTTGATATCATTTATCGATATCCGTCACTTGTGA
AAATTTCAAGTCACCAGCACTTTCAATCCTGAGATCCGAGGCTAAATTAC
AAAGCTTGTAGACAATTGCTGTAAAAATTTTCACTAATTTGCTGGGATTT
GCCTAATAAAAGAGATTGGGGTCCAAGATTGGTATAATCTGCTTCCCGAA
ACTTTTTTTCAGTGTTCTGTTTTCTGTTTTTCCACTGATCTTTTTTGATA
GATAGATATGTCTTCCATAGGTCATAAGCATTCGGGAAAATTGGGTCGAG
ACTCAATATGCTTAGCAAAATCTCATATTCAGCCTAAATTTATTTCTATA
CTGTATATGCTTAGAGTTCGATTCGTCGATTTTCTTTGGGTTAAGGAAAA
TTTCGAATTTTTGAGTCGGAGCATTGATTTGGATGTAGAATTTGGCGCCG
CAGGTGAAAAATTTGGTCTAGAAAGCTGAAACATCTCTAAAAGTACAGTA
AAACCTCCAATTAACTGACACTCTTTAGAGGCAGACACCTCTGATTAGCG
GACATGATCTTTACACGAAATGACCGAAACCCTACTTTTTCCTTTCCAAT
TGGCGGACATTCAAAATGGTCAAAGACTTTTTTAACAGGGGCCTCAAGAC
TACTATTATTCATAAAAACTAAATTGCTGCATTTGAATAATCATTCTTTT
GTATACCGAGTTTATCGTTCTACATCTGCAATCTGAGCTTTACTAAGCTC
ATTTGACGTCAATCGATACTTTGATTATCAGCCGGATTAAGAGAGAATTA
TATATGAGTGAAGGTAGAGAGTCTATCACTATATATCCCTAACACCCTGC
CTGGAAGAGCTTGGGATTCGAACACAGTCCATTGCGTTGAAAGTCTGTGA
TCGAAACCTTCACACTACCAATCGGATAGACTCTCTACCTTCACTCATAA
ATCATTCTTTTGTTCTTCCGTGTCCTTATTGTCTCTAGAAAAGTACTTCG
GACCAAAGTTTTACATTTACTTAACCCCTTAATAATACCTTTTACCAAAA
TTAGAGTACAGAATTGAAAAGTTTCCAAAAGGAGGACACTTCCAATGAGC
GGACACTGACACTTTCTTGATGGTGGCCGCTAGTTTGAGGTTTCATTGCA
ACCCTAAAAAGGTCCGCGTTTTAGAAAAGATGCACGATTTTTTTTTTGCA
TTTTAACTTGGAGCTTAGCATTACTGTATGTTTATTTTTTATCGAATTCG
ACCCTAAGTATGCTTATAAACGTAATGCTTATATAATAAAAGAGTGTAGG
GTTAGAGGATTGCGGGTATGTGCGGGGAATTTCTTCGCGTTAATTTCTCT
TTTCTGTTCAAAAGTATATTTGGTGAAGAGAAAGGGTTTCAACAAAATCG
TCATTGGGCTTCAAAGCTTAAAAGACCTAGCTAGAGTGAGTGTTAGGTGT
GATGTATAACCTCTGTTCAGCAAGTTTCACTTCACTTAAAAAGAAGCTAT
ATCGGCCTTTGAGAAGAAAATATTCTTATTACCTTGGATAAGTCTTGGTC
GTCTGCGACGGCAGGCACCCTTCGTAATTTCAATTTTACCTGTATATGTG
TAATTGAAAAACTATTTTCTTTTAATTTAGAACGACATTCAAACTTACTA
ATACTTGTGATACTGGTCGATATGTCAGGATTTCCATCATCATTCAAAAA
CCAAGTCCAATATGAACCCGGTGAAGACTAAAACAAAGCATCTGTTGGTA
TTCTTCGTTGCTGCTTCCCATCCGTTCGTTTTCTATCTTATCTCGGGAGA
CATCTCTTCGGTTGGATTTGTCATTAGTACCCTAGTGGTGTTGTGAAAAT
TTTGGCATTTAATCTTGAAGTAGACAAGTAGCTTGTTGATAGAAAACTTC
AATAAGATCACTATTATGGCGGTCATTTTTGGACACAGACTTTGGATTGG
AAGTAAGATTTACCACCCGGTTATCAAAACTACATACCGTCCGGAAATAA
GGAAGTTGTTAGACTTCACTGGTAGAACTTTAAATTGTTAAGAACGCTCT
CTTGAAAAGATTAGACCATGGAATTATTATAGACACTGGAAAAACAAGGG
CTGATTTTTGCCAATTTCTCGTGTACAAGCCTTGTCCGCAGTAATGACAT
TATTGTTCACCCCACAGATCTGTAAAGCCCGAAGGGCTAGATAAGCAACT
TTTATCGAAAAGTGAAGCCTAGGTTTGGAAGGATTTCCAACCAAAGTCCA
CCATCCTTCCACCATTAAATGATTTTTCGTAGAATTTTAATTGCATTTCT
AAATCATCAAAATACACTTATCCAATTCCCAAATGAGCCTTTCCTCCGAG
ATTCAAATTCATCTTGTTAATTACTAATTAAACGTCGTTATGACGTTTTA
AATCTCGAGAAAAATGCAAAAACATGCTATGTGTATAAGAAATTGAATAT
TGACACCAGAAATTTTTAAACTTCAACCTAAAAAAATCCACCGTGCCACC
ACGTGCCCCAAAAAGATTTTCATACCACAGATGAGACTCACGTCTGATAT
ACCGGGTGACCCAAGAAAAAGTTCGGACAGTTTTCGTTGGCTAGGGGCTG
AAATAAAAGTAATATAAACTCAATCTTTTTTTTTTAAGATAGAAGATGCT
CTTTCTTAAACTTTGAGCTATTACTTTTTAAATTTGGCTCAGTGGTTCTT
CATTTATGAGCTTTAATAAACAAAGTGCAAAAACACGTCAAAAATGAGGT
ATCAAATTATAATTGTTTTCTTTATCTTTAACATTGTGTTTTGCAAGTGT
GCTGATGTTTTACGACCTCATTAATTAGTGTTGTGGGTAATTAAAGTTTG
TAAAATAATGAATTAACAACGAAGTAGATTTATATAAATTTATTGTAAAT
ATTTTTATCAAAAATATTCTGCAAATAAGCAAAATTTGCCTTCTCTGTGA
AAATGCCGTGTCTTATGAAAGATCAGAGATTGTGGGTTTGCCTGGAATAT
GCTAGAAAGTCTATAACTTGTTAATAAATTTTGTGAAAGTAAAGAATCTA
AAAAAAGTTTGAAAATTGAATAAAAATGTCTAACATCCTCTTTTCTAACG
ATTTAACGACCTTGATTGATTGATTAATAATAAAACAATTTGATACCTCA
TTTTTTATGTAATTTCGCTCTTTCCGAAAAGTGAATTTTGACTTTAAAAG
CTCATAAGTAGGGAACTAGTAGGTCAAATTTAAAAAGTAATAGCTCAAAC
TTTAAGTTAGAATATCTACTTTCTACATATTAAAACTTCAAGCACTTTGT
GACATTTGTTCGGCCTCGAGACGCCGAAAACCGTCCGAACTTTTTCGTGG
GTCACCCGGTACAGTATGTCAATCTCAGCTCTTCTCGGAGAAATATTGGA
AAAATATTCCCAATTCGAAATTTCGTGTCATTATAAGCATTTTGTTTGAT
TCAACTCGTCTGATGATTTTTTTCTCACAGATGTATCCATTTGGTATTCT
AGCATTTATCTTCAAACTTTTGGCCATCAAAAGTTAGACAACTTTATAGA
AATAAGAGAATTAATCATTTTTCAAAATCAGAGTCCTTCGAGCCGCCATG
ACAGTTGTTCTTTGCGGACAAAGCCTGTACATTGATTGTTTTCTGAAACA
ATAGAAAAACAAATCTTCGCTCTTCACCGTTTTATTCGATGTTTATCCAG
GGTCTCTATAATAAATACATGATTAGACTGAGACGACACTTTAACCGACG
TTACTTTCAAATTTGTTAAAATATTTTTATATAAATATATATTGAGTAAG
TTTAATGTGATTGGAAGAATTTTATTCTGTTTGGTACGGTATAGTCTTTC
TCAACATATTTTCAGTACAAGGATTTATCTTATCAAATAGAAAACTAATT
TGTGATTTATCTTAGTAATTTGACAAAGATTTTGCCCTCCCCCACCCCTC
AAATTGACCGGGAACAAGCTTTAGTCGGGAAAATCTTAGTGCCTCCCTAA
TCCCTAAAACTATTAGTCAGTTATCACATGATATTCATTCCCGGATAATG
TAACTTTTTTGAGTGAGTCACCACAAACCGGGACATAATTTTTACCTATT
TTTATTTCTTTCCTAAAAGTTATCATTTTTCACGTTATGATTTTTGGAAT
AAACGACTCAATATCGAAGGAAGTGACCTCTCCAAAGGCTATATCTCACT
AGTCCGACACTTTCTTGTCCGACAACAAGGCAGTACGAAAATGGAATTAG
CCCGAAAGTATCTCTACGCCGAAAAATGTCGTATGATCTTTTTATAATTT
TACAAGTCTCTTACTTTATTTGCTGGCCAACACCAACGTTAAGACACCAC
TCATCGTCGCTTCAAATTTTCTTTTTTTCACAATCATCTCTCCAACTTTT
AACCCTAATCAGTGAACCCTCTCCCTCCCACAACAATTGTATTTTTCAAA
TTGCGACTCAAGAACAAATATATTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000483XLOC_000483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000785-exon-sc0000005-1575043694:360817..361977TCONS_00000785-exon-sc0000005-1575043694:360817..361977Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1575043694:359277..360347TCONS_00000785-exon-sc0000005-1575043694:359277..360347Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1575043694:357498..359164TCONS_00000785-exon-sc0000005-1575043694:357498..359164Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1510915933:360817..361977TCONS_00000785-exon-sc0000005-1510915933:360817..361977Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1510915933:359277..360347TCONS_00000785-exon-sc0000005-1510915933:359277..360347Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1510915933:357498..359164TCONS_00000785-exon-sc0000005-1510915933:357498..359164Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1491911889:360817..361977TCONS_00000785-exon-sc0000005-1491911889:360817..361977Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1491911889:359277..360347TCONS_00000785-exon-sc0000005-1491911889:359277..360347Clytia hemisphaericaexon
TCONS_00000785-exon-sc0000005-1491911889:357498..359164TCONS_00000785-exon-sc0000005-1491911889:357498..359164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:357498..361977 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05835	0.885477	0.396065	0.276161	6.35781	5.22143	5.34268	5.58045	4.52614	4.48117	6.89805	4.89584	5.19567	4.48549	3.91011	4.51114	3.32915	3.46198	3.07684	3.953	3.97948	4.37438	3.062	3.20043	6.48538	7.89632	6.87111	4.89788	5.40768	3.70043
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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