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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000784 ID=TCONS_00000784|Name=TCONS_00000784|organism=Clytia hemisphaerica|type=transcript|length=4368bp
GTAGACAACCTGAAGTTTTGATATCATTTATCGATATCCGTcacttgtga
aaatttcaagtcaccAGCACTTTCAATCCTGAGATCCGAGGCTAAATTAC
AAAGCTTGTAGACAATTGCTGTAAAAATTTTCACTAATTTGCTGGGATTT
GCCTAATAAAAGAGATTGGGGTCCAAGATTGGTATAATCTGCTTCCCGAA
ACTTTTTTTCAGTGTTCTGTTTTCTGTTTTTCCACTGATCTTTTTTGATA
GATAGATATGTCTTCCATAGGTCATAAGCATTCGGGAAAATTGGGTCGAG
ActcaatatgcttagcaaaatctcataTTCAGCCTAAATTTATTTCTATA
CTGTATATGCTTAGAGTTCGATTCGTCGATTTTCTTTGGGTTAaggaaaa
tttcgaatttttgagTCGGAGCATTGATTTGGATGTAGAATTTGGCGCCG
CAGGTGAAAAATTTGGTCTAGAAAGCTGAAACATCTCTAAAAgtacagta
aaacctccaatTAACTGACACTCTTTAGAGGcagacacctctgattagcg
gacatgATCTTTACACGAAATGACCGAAACCCTACTTTTTCCTTTCCAAT
TGGCGGACATTCAAAATGGTCAAAGACTTTTTTAACAGGGGCCTCAAGAC
TACTATTattcataaaaactaaattgcTGCATTTGAATAATCATTCTTtt
gtataccgagtttatcgttctacatctgcaatctgagctttactaagctc
atttgacgtcaatcgatacttTGATTATCAGCCGGATTAAGAGAGAATTA
TatatgagtgaaggtagagagtctatcactaTATatccctaacaccctgc
ctggaagagcttgggattcgaacacagtccattgcgttgaaagtctgtga
tcgaaaccttcacactaccaatcggatagactctctaccttcactcataa
ATCATTCTTTTGTTCTTCCGTGTCCTTATTGTCTCTAGAAAAGTACTTCG
GACCAAAGTTTTACATTTACTTAACCCCTTAATAATACCTTTTACCAAAA
TTAGAGTACAGAATtgaaaagtttccaaaaggAGGACACTTCCAATGAGC
GGACACTGACACTTTCTTGATGGTGGCCGCTAGTTTGAGGTTTCATTGCA
ACCCTAAAAAGGTCCGCGTTTTAGAAAAGAtgcacgattttttttttgca
ttttaactTGGAGCTTAGCATTACtgtatgtttattttttatcgaattcg
accctaagtatgcttataaacgtaaTGCTTATATAATAAAAGAGTGTAGG
GTTAGAGGATTGCGGGTATGTGCGGGGAATTTCTTCGCGTTAATTTCTCT
TTTCTGTTCAAAAGTATATTTGGTGAAGAGAAAGGGTTTCAACAAAATCG
TCATTGGGCTTCAAAGCTTAAAAGACCTAGCTAGAGTGAGTGTTAGGTGT
GATGTATAACCTCTGTTCAGCAAGTTTCACTTCACTTAAAAAGAAGCTAT
ATCGGCCTTTGAGaagaaaatattcttattaccttGGATAAGTCTTGGTC
GTCTGCGACGGCAGGCACCCTTCGTAATTTCAATTTTACCTGTATATGTG
TAAttgaaaaactattttcttttaatttagaACGACATTCAAACTTACTA
ATACTTGTGATACTGGTCGATATGTCAGGATTTCCATCATCATTCAAAAA
CCAAGTCCAATATGAACCCGGTGAAGACTAAAACAAAGCATCTGTTGGTA
TTCTTCGTTGCTGCTTCCCATCCGTTCGTTTTCTATCTTATCTCGGGAGA
CATCTCTTCGGTTGGATTTGTCATTAGTACCCTAGTGGTGTTGTGAAAAT
TTTGGCATTTAATCTTGAAGTAGACAAGTAGCTTGTTGATAGAAAACTTC
AATAAGATCACTATTATGGCGGTCATTTTTGGACACAGACTTTGGATTGG
AAGTAAGATTTACCACCCGGTTATCAAAACTACATACCGTCCGGAAATAA
GGAAGTTGTTAGACTTCACTGGTAGAACTTTAAATTGTTAAGAACGCTCT
CTTGAAAAGATTAgaccatggaattattatagacactggaaaaacaaggg
ctgatttttgccaatttctcgtgtacaagccttgtccgcagtaatgacat
tattgttcaccccacagatctgtaaagcccgaagggctagataagcaact
tttatcgaaaagtgaagcctaggtttggaaggatttccaacCAAAGTCCA
CCAtccttccaccattaaatgatttttcgtagaattttaattgcatttct
aaatcatcaaaatacacttatccaattcccaaatgagccTTTCCTCCGAG
ATTCAAATTCATCTTGTTAATTACTAATTAaacgtcgttatgacgtttta
aatctcgagaaaaatgcaaaaacatgctatgtgtataagaaattgaatat
tgacaccagaaatttttaaacttcaacctaaaaaaatccaccgtgccacc
acgtgccccaaaaagattttcataccacagatGAGACTCACGTCtgatat
accgggtgacccaagAAAAAGTTCGGACAGTTTTCGTTGGCTAGGGGctg
aaataaaagtaatataaactcaatcttttttttttaagatagaaGATGCT
CTTTCTTAAactttgagctattactttttaaatttggctcagTGGTTCTT
CGACCTCATTAATTAGTGTTGTGGGTAAttaaagtttgtaaaataatgaa
ttaacaacgaagtagatttatataaatttattgtaaatatttttatcaaa
aatattctgCAAATAAGCAAAATTTGCCTTCTCTGTGAAAATGCCGTGTC
TTATGAAAGATCAGAGATTGTGGGTTTGCCTGGAATATGCTAGAAAGTCT
ATAACTTGttaataaattttgtgaaagtaaagaatctaaaaaaagtttga
aaattgaataaaaatgtctAACATCCTCTTTTCTAACGATTTAACGAcct
tgattgattgattaataataaaacaatttgatacctcattttttatgtaa
tttcgctctttccgaaaagtgaattttgactttaaaagctcataagtagg
gaACTAGtaggtcaaatttaaaaagtaatagctcaaactttaagttagaa
tatctactttctaCATATTAAAACTTCAAGCACTTTgtgacatttgttcg
gcctcgagACGCCGAAaaccgtccgaactttttcgtgggtcacccggtac
agtatgtcaatctcagctcttctcggagaaatattggaaaaatattccca
attcgaaatttcgtgtcattataagcattttgtttgattcaaCTCGtctg
atgatttttttctcacagaTGTATCCatttggtattctagcatttatcTT
CAAACTTTTGGCCATCAAAAGTTAGACAACTTTATAGAAATAAGagaatt
aatcatttttcaaaatcagagtccttcgagccgccatgacagttgttctt
tgcggacaaagcctgtacattgattgttttctgaaacaatagaaaaacaA
ATCTTCGCTCTTCACCGTTttattcgatgtttatccagggTCTCTATAAT
AAATACATGATTAGACTGAGACGACACTTTAACCGACGTTACTTTcaaat
ttgttaaaatatttttatataaatataTATTGAGTAAGTTTAATGTGATT
GGAAGAATTTTATTCTGTTTGGTACGGTATAGTCTTTCTCAACATATTTT
CAGTACAAGGATTTATCTTATCAAATAGAAAACTAATTTGTGATTTATCT
TAgtaatttgacaaagattttgCCCTCCCCCACCCCTCAAATTGACCGGG
AACAAGCTTTAGTCGGGAAAATCTTAGTGCCTCCCTAATCCCTAAAACTA
TTAGTCAGTTATCACATGATATTCATTCCCGGATAATGTAACTTTTTTGA
GTGAGTCACCACAAACCGGGACATAATTTTTacctatttttatttctttc
ctaAAAGTTATCATTTTTCACGTTATGATTTTTGGAATAAACGACTCAAT
ATCGAAGGAAGTGACCTCTCCAAAGGCTATAtctcactagtccgacactt
tcttgTCCGACAACAAGGCAGTACGAAAATGGAATTAGCCCGAAAGTATC
TCTACGCCGAAAAATGTCGTATgatctttttataattttacaaGTCTCTT
ACTTTATTTGCTGGCCAACACCAACGTTAAGACACCACTCATCGTcgctt
caaattttctttttttcacaaTCATCTCTCCAACTTTTAACCCTAATCAG
TGAACCCTCTCCCTCCCACAACaattgtatttttcaaattgcGACTCAAG
AACAAATATATTTACAAG Run BLAST on NCBI transcript from alignment at sc0000005:357498..361977- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000784 ID=TCONS_00000784|Name=TCONS_00000784|organism=Clytia hemisphaerica|type=transcript|length=4480bp|location=Sequence derived from alignment at sc0000005:357498..361977- (Clytia hemisphaerica)
GTAGACAACCTGAAGTTTTGATATCATTTATCGATATCCGTCACTTGTGA
AAATTTCAAGTCACCAGCACTTTCAATCCTGAGATCCGAGGCTAAATTAC
AAAGCTTGTAGACAATTGCTGTAAAAATTTTCACTAATTTGCTGGGATTT
GCCTAATAAAAGAGATTGGGGTCCAAGATTGGTATAATCTGCTTCCCGAA
ACTTTTTTTCAGTGTTCTGTTTTCTGTTTTTCCACTGATCTTTTTTGATA
GATAGATATGTCTTCCATAGGTCATAAGCATTCGGGAAAATTGGGTCGAG
ACTCAATATGCTTAGCAAAATCTCATATTCAGCCTAAATTTATTTCTATA
CTGTATATGCTTAGAGTTCGATTCGTCGATTTTCTTTGGGTTAAGGAAAA
TTTCGAATTTTTGAGTCGGAGCATTGATTTGGATGTAGAATTTGGCGCCG
CAGGTGAAAAATTTGGTCTAGAAAGCTGAAACATCTCTAAAAGTACAGTA
AAACCTCCAATTAACTGACACTCTTTAGAGGCAGACACCTCTGATTAGCG
GACATGATCTTTACACGAAATGACCGAAACCCTACTTTTTCCTTTCCAAT
TGGCGGACATTCAAAATGGTCAAAGACTTTTTTAACAGGGGCCTCAAGAC
TACTATTATTCATAAAAACTAAATTGCTGCATTTGAATAATCATTCTTTT
GTATACCGAGTTTATCGTTCTACATCTGCAATCTGAGCTTTACTAAGCTC
ATTTGACGTCAATCGATACTTTGATTATCAGCCGGATTAAGAGAGAATTA
TATATGAGTGAAGGTAGAGAGTCTATCACTATATATCCCTAACACCCTGC
CTGGAAGAGCTTGGGATTCGAACACAGTCCATTGCGTTGAAAGTCTGTGA
TCGAAACCTTCACACTACCAATCGGATAGACTCTCTACCTTCACTCATAA
ATCATTCTTTTGTTCTTCCGTGTCCTTATTGTCTCTAGAAAAGTACTTCG
GACCAAAGTTTTACATTTACTTAACCCCTTAATAATACCTTTTACCAAAA
TTAGAGTACAGAATTGAAAAGTTTCCAAAAGGAGGACACTTCCAATGAGC
GGACACTGACACTTTCTTGATGGTGGCCGCTAGTTTGAGGTTTCATTGCA
ACCCTAAAAAGGTCCGCGTTTTAGAAAAGATGCACGATTTTTTTTTTGCA
TTTTAACTTGGAGCTTAGCATTACTGTATGTTTATTTTTTATCGAATTCG
ACCCTAAGTATGCTTATAAACGTAATGCTTATATAATAAAAGAGTGTAGG
GTTAGAGGATTGCGGGTATGTGCGGGGAATTTCTTCGCGTTAATTTCTCT
TTTCTGTTCAAAAGTATATTTGGTGAAGAGAAAGGGTTTCAACAAAATCG
TCATTGGGCTTCAAAGCTTAAAAGACCTAGCTAGAGTGAGTGTTAGGTGT
GATGTATAACCTCTGTTCAGCAAGTTTCACTTCACTTAAAAAGAAGCTAT
ATCGGCCTTTGAGAAGAAAATATTCTTATTACCTTGGATAAGTCTTGGTC
GTCTGCGACGGCAGGCACCCTTCGTAATTTCAATTTTACCTGTATATGTG
TAATTGAAAAACTATTTTCTTTTAATTTAGAACGACATTCAAACTTACTA
ATACTTGTGATACTGGTCGATATGTCAGGATTTCCATCATCATTCAAAAA
CCAAGTCCAATATGAACCCGGTGAAGACTAAAACAAAGCATCTGTTGGTA
TTCTTCGTTGCTGCTTCCCATCCGTTCGTTTTCTATCTTATCTCGGGAGA
CATCTCTTCGGTTGGATTTGTCATTAGTACCCTAGTGGTGTTGTGAAAAT
TTTGGCATTTAATCTTGAAGTAGACAAGTAGCTTGTTGATAGAAAACTTC
AATAAGATCACTATTATGGCGGTCATTTTTGGACACAGACTTTGGATTGG
AAGTAAGATTTACCACCCGGTTATCAAAACTACATACCGTCCGGAAATAA
GGAAGTTGTTAGACTTCACTGGTAGAACTTTAAATTGTTAAGAACGCTCT
CTTGAAAAGATTAGACCATGGAATTATTATAGACACTGGAAAAACAAGGG
CTGATTTTTGCCAATTTCTCGTGTACAAGCCTTGTCCGCAGTAATGACAT
TATTGTTCACCCCACAGATCTGTAAAGCCCGAAGGGCTAGATAAGCAACT
TTTATCGAAAAGTGAAGCCTAGGTTTGGAAGGATTTCCAACCAAAGTCCA
CCATCCTTCCACCATTAAATGATTTTTCGTAGAATTTTAATTGCATTTCT
AAATCATCAAAATACACTTATCCAATTCCCAAATGAGCCTTTCCTCCGAG
ATTCAAATTCATCTTGTTAATTACTAATTAAACGTCGTTATGACGTTTTA
AATCTCGAGAAAAATGCAAAAACATGCTATGTGTATAAGAAATTGAATAT
TGACACCAGAAATTTTTAAACTTCAACCTAAAAAAATCCACCGTGCCACC
ACGTGCCCCAAAAAGATTTTCATACCACAGATGAGACTCACGTCTGATAT
ACCGGGTGACCCAAGAAAAAGTTCGGACAGTTTTCGTTGGCTAGGGGCTG
AAATAAAAGTAATATAAACTCAATCTTTTTTTTTTAAGATAGAAGATGCT
CTTTCTTAAACTTTGAGCTATTACTTTTTAAATTTGGCTCAGTGGTTCTT
CATTTATGAGCTTTAATAAACAAAGTGCAAAAACACGTCAAAAATGAGGT
ATCAAATTATAATTGTTTTCTTTATCTTTAACATTGTGTTTTGCAAGTGT
GCTGATGTTTTACGACCTCATTAATTAGTGTTGTGGGTAATTAAAGTTTG
TAAAATAATGAATTAACAACGAAGTAGATTTATATAAATTTATTGTAAAT
ATTTTTATCAAAAATATTCTGCAAATAAGCAAAATTTGCCTTCTCTGTGA
AAATGCCGTGTCTTATGAAAGATCAGAGATTGTGGGTTTGCCTGGAATAT
GCTAGAAAGTCTATAACTTGTTAATAAATTTTGTGAAAGTAAAGAATCTA
AAAAAAGTTTGAAAATTGAATAAAAATGTCTAACATCCTCTTTTCTAACG
ATTTAACGACCTTGATTGATTGATTAATAATAAAACAATTTGATACCTCA
TTTTTTATGTAATTTCGCTCTTTCCGAAAAGTGAATTTTGACTTTAAAAG
CTCATAAGTAGGGAACTAGTAGGTCAAATTTAAAAAGTAATAGCTCAAAC
TTTAAGTTAGAATATCTACTTTCTACATATTAAAACTTCAAGCACTTTGT
GACATTTGTTCGGCCTCGAGACGCCGAAAACCGTCCGAACTTTTTCGTGG
GTCACCCGGTACAGTATGTCAATCTCAGCTCTTCTCGGAGAAATATTGGA
AAAATATTCCCAATTCGAAATTTCGTGTCATTATAAGCATTTTGTTTGAT
TCAACTCGTCTGATGATTTTTTTCTCACAGATGTATCCATTTGGTATTCT
AGCATTTATCTTCAAACTTTTGGCCATCAAAAGTTAGACAACTTTATAGA
AATAAGAGAATTAATCATTTTTCAAAATCAGAGTCCTTCGAGCCGCCATG
ACAGTTGTTCTTTGCGGACAAAGCCTGTACATTGATTGTTTTCTGAAACA
ATAGAAAAACAAATCTTCGCTCTTCACCGTTTTATTCGATGTTTATCCAG
GGTCTCTATAATAAATACATGATTAGACTGAGACGACACTTTAACCGACG
TTACTTTCAAATTTGTTAAAATATTTTTATATAAATATATATTGAGTAAG
TTTAATGTGATTGGAAGAATTTTATTCTGTTTGGTACGGTATAGTCTTTC
TCAACATATTTTCAGTACAAGGATTTATCTTATCAAATAGAAAACTAATT
TGTGATTTATCTTAGTAATTTGACAAAGATTTTGCCCTCCCCCACCCCTC
AAATTGACCGGGAACAAGCTTTAGTCGGGAAAATCTTAGTGCCTCCCTAA
TCCCTAAAACTATTAGTCAGTTATCACATGATATTCATTCCCGGATAATG
TAACTTTTTTGAGTGAGTCACCACAAACCGGGACATAATTTTTACCTATT
TTTATTTCTTTCCTAAAAGTTATCATTTTTCACGTTATGATTTTTGGAAT
AAACGACTCAATATCGAAGGAAGTGACCTCTCCAAAGGCTATATCTCACT
AGTCCGACACTTTCTTGTCCGACAACAAGGCAGTACGAAAATGGAATTAG
CCCGAAAGTATCTCTACGCCGAAAAATGTCGTATGATCTTTTTATAATTT
TACAAGTCTCTTACTTTATTTGCTGGCCAACACCAACGTTAAGACACCAC
TCATCGTCGCTTCAAATTTTCTTTTTTTCACAATCATCTCTCCAACTTTT
AACCCTAATCAGTGAACCCTCTCCCTCCCACAACAATTGTATTTTTCAAA
TTGCGACTCAAGAACAAATATATTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000784-exon-sc0000005-1575043694:359277..361977 | TCONS_00000784-exon-sc0000005-1575043694:359277..361977 | Clytia hemisphaerica | exon |
| TCONS_00000784-exon-sc0000005-1575043694:357498..359164 | TCONS_00000784-exon-sc0000005-1575043694:357498..359164 | Clytia hemisphaerica | exon |
| TCONS_00000784-exon-sc0000005-1510915933:359277..361977 | TCONS_00000784-exon-sc0000005-1510915933:359277..361977 | Clytia hemisphaerica | exon |
| TCONS_00000784-exon-sc0000005-1510915933:357498..359164 | TCONS_00000784-exon-sc0000005-1510915933:357498..359164 | Clytia hemisphaerica | exon |
| TCONS_00000784-exon-sc0000005-1491911889:359277..361977 | TCONS_00000784-exon-sc0000005-1491911889:359277..361977 | Clytia hemisphaerica | exon |
| TCONS_00000784-exon-sc0000005-1491911889:357498..359164 | TCONS_00000784-exon-sc0000005-1491911889:357498..359164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:357498..361977 - |
Blast
The following BLAST results are available for this feature:
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