TCONS_00000770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000770
Unique NameTCONS_00000770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000770 ID=TCONS_00000770|Name=TCONS_00000770|organism=Clytia hemisphaerica|type=transcript|length=916bp
GATTCATTAACAGTTCTATATATTCTTTATCCAGTTATGTCGTTAAAATT
TACAGCGTGTCTATGAACTAAAATGAGAAATATATCCATTACTTATATAC
AATAAAATACTATTCAATACAcaatttccaaaataaaattcttgaaaata
ttatCATCACCCTCAAGGGggatttgaaatcaaaattcaaaaccatTTGC
ATCTGATTGTATTGGTATCTGATAATCAAAACTAGTTCCAGGAAATTGAC
TCTTGATCCGATAATTCTGGatctaaaattttcaagtcCTTCTCtgtaat
gttcttaacttggtTTATATAAATCAAGGATGATTTTATTGGAGCATGCT
TGGTAAAACAAACCATTGTTCCAGCCACATTCACCCTCTTTGTTAACTTT
GCAGATTCTATGTTGAGCAGTGCATTCATCAATCGGTTGGTTGTAGTTAA
TCTCCCATTTGCATTTACTTTCGTTATCACAATGTCCGTTCATACAAGTA
TTGATTTTACATTTATCGCATTGGTACTCTCCCTTGATACCTCGTTTCAT
GGATGGTGTCAATGTTTTGTATTCTTTGGTCCAGTCGCATTTGTTAACTT
GCAACTCACCATTGAAAATACGCCCTGTGAATAGGTACGATTTGCCTTTA
TCAAATTCAGAACCACACGTCGCTTGATGAGCACTTGTCTGGATAGTTGC
TTTGAAGAATGAAGCATAAGTGTCTTCTTTAGCTGTCACGTTTCCTTTGT
ATACCTTCATGACCAAGATGTCGTAATAAGCGTTCACTGGCACTTCGAGG
CCGAGCATCTCAAACATGGCGGCGTTGGTCATGTCTTTTTTGGTGTACTT
TTTGATGACCATACCTTTCAAAGCTATaagataagaaaaatatttcggtt
ATTCATTTGAAAAGAT
Run BLAST on NCBI

transcript from alignment at sc0000005:187357..188342-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000770 ID=TCONS_00000770|Name=TCONS_00000770|organism=Clytia hemisphaerica|type=transcript|length=986bp|location=Sequence derived from alignment at sc0000005:187357..188342- (Clytia hemisphaerica)
GATTCATTAACAGTTCTATATATTCTTTATCCAGTTATGTCGTTAAAATT
TACAGCGTGTCTATGAACTAAAATGAGAAATATATCCATTACTTATATAC
AATAAAATACTATTCTATCTACACAATTTCCAAAATAAAATTCTTGAAAA
TATTATCATCACCCTCAAGGGGGGTTTGNACATTCAATACACAATTTCCA
AAATAAAATTCTTGAAAATATTATCATCACCCTCAAGGGGGATTTGAAAT
CAAAATTCAAAACCATTTGCATCTGATTGTATTGGTATCTGATAATCAAA
ACTAGTTCCAGGAAATTGACTCTTGATCCGATAATTCTGGATCTAAAATT
TTCAAGTCCTTCTCTGTAATGTTCTTAACTTGGTTTATATAAATCAAGGA
TGATTTTATTGGAGCATGCTTGGTAAAACAAACCATTGTTCCAGCCACAT
TCACCCTCTTTGTTAACTTTGCAGATTCTATGTTGAGCAGTGCATTCATC
AATCGGTTGGTTGTAGTTAATCTCCCATTTGCATTTACTTTCGTTATCAC
AATGTCCGTTCATACAAGTATTGATTTTACATTTATCGCATTGGTACTCT
CCCTTGATACCTCGTTTCATGGATGGTGTCAATGTTTTGTATTCTTTGGT
CCAGTCGCATTTGTTAACTTGCAACTCACCATTGAAAATACGCCCTGTGA
ATAGGTACGATTTGCCTTTATCAAATTCAGAACCACACGTCGCTTGATGA
GCACTTGTCTGGATAGTTGCTTTGAAGAATGAAGCATAAGTGTCTTCTTT
AGCTGTCACGTTTCCTTTGTATACCTTCATGACCAAGATGTCGTAATAAG
CGTTCACTGGCACTTCGAGGCCGAGCATCTCAAACATGGCGGCGTTGGTC
ATGTCTTTTTTGGTGTACTTTTTGATGACCATACCTTTCAAAGCTATAAG
ATAAGAAAAATATTTCGGTTATTCATTTGAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000476XLOC_000476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000770-exon-sc0000005-1575043694:188232..188342TCONS_00000770-exon-sc0000005-1575043694:188232..188342Clytia hemisphaericaexon
TCONS_00000770-exon-sc0000005-1575043694:187357..188161TCONS_00000770-exon-sc0000005-1575043694:187357..188161Clytia hemisphaericaexon
TCONS_00000770-exon-sc0000005-1510915933:188232..188342TCONS_00000770-exon-sc0000005-1510915933:188232..188342Clytia hemisphaericaexon
TCONS_00000770-exon-sc0000005-1510915933:187357..188161TCONS_00000770-exon-sc0000005-1510915933:187357..188161Clytia hemisphaericaexon
TCONS_00000770-exon-sc0000005-1491911889:188232..188342TCONS_00000770-exon-sc0000005-1491911889:188232..188342Clytia hemisphaericaexon
TCONS_00000770-exon-sc0000005-1491911889:187357..188161TCONS_00000770-exon-sc0000005-1491911889:187357..188161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:187357..188342 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0501807	0.0978681	0.0568171	0.111173	2.03014	1.01602	1.99997	2.11394	26.3021	52.5879	5.43985	102.9	88.6736	90.4248	74.484	56.326	39.5916	63.0518	38.5138	79.8781	14.2156	13.2052	22.3816	26.3113	8.08152	22.7917	51.2617	84.4484	12.6988	11.0655
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001820TIMP
IPR027465TIMP_C
IPR001134Netrin_domain
IPR008993TIMP-like_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0008191metalloendopeptidase inhibitor activity
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008191 metalloendopeptidase inhibitor activity
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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