|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=transcript|length=1060bp
TTTTCCAATGCCAGTTGGTGTTGTTAGCTTGCAGCAATGAAGTTCAGAAT
TCATAAGAGcaaaattattcttttatttggcTTATCCACATTTTGGATCT
TTGGGATATTTTTCTTCCGTTCTTTTAAAGGTGAACCATTGGTGAAGTAC
AATCAGAAATGCACTCACAAGCATACTTTACCACAGATGCTACTTGCTAT
AAACTTCAATTTCCCACACTACAAGAACATACCAACATTGAAAAAGCTTT
ATGAACCCTTATTCAAGAAAGTCATTTTTTGTGGTGCAAAGGAAAATAAA
ACTTACGAGGCTGATTTACTTGTGGTACAAGAGAATCGTGGGTACCAGGG
CTATGTGTGTCTCATCagagcgattgaaaaatatccAACTGGTTTTGTTG
GATATCTTTATAGCAACGATGAcgttattttaaatttttggaatttcaat
gCAGACCCTCATAAAGTATGGCTTGGAAAACGAATTCATAAAAGATTCAT
TCATCGACTTGGTTATGAACCACCAAATTGGAGTTGGTTTAAGGGATTTG
ATGGTGCTAAAAGGTGCGAGAATGTCTTCAGGAAGATCAACAATGGTTCC
GTTAGCCAATTGATACCAGGAGAATCAAGAAATACGGACGCATCATTCAT
TACAAaagctttaaaagtttttaaacggaatgttaattttgaaaacacaa
aaattgtaTGCGTTGTCGGTCGCTCAGATTTAATATATATTCCAGCAATT
CATTCGCAAGGGTTTAAAATCATTGGAAATATCTACAAccgtgaaaaagt
ttttttggaaatcgcAGTACCATCGATCACGCATTATTTGGAtttgaagg
aaaatttcattaatCTGAATGGGAACTATTACAATGATATTGTAGGGTAC
TCGAAAGATTATTGGAGTGGCAAAGCATTTTTTGACACCCATAACATAAA
CACTTCATTCACACATCCGCTGAAATTATCTAATCCATTATTAAAATCGT
ATGTTGATGGAGTTTATGCGGGACTGATTAAAACATTTAGAGAACAGTGC
AATTGGTGAA Run BLAST on NCBI protein sequence of TCONS_00000769-protein >TCONS_00000769-protein ID=TCONS_00000769-protein|Name=TCONS_00000769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MKFRIHKSKIILLFGLSTFWIFGIFFFRSFKGEPLVKYNQKCTHKHTLPQ
MLLAINFNFPHYKNIPTLKKLYEPLFKKVIFCGAKENKTYEADLLVVQEN
RGYQGYVCLIRAIEKYPTGFVGYLYSNDDVILNFWNFNADPHKVWLGKRI
HKRFIHRLGYEPPNWSWFKGFDGAKRCENVFRKINNGSVSQLIPGESRNT
DASFITKALKVFKRNVNFENTKIVCVVGRSDLIYIPAIHSQGFKIIGNIY
NREKVFLEIAVPSITHYLDLKENFINLNGNYYNDIVGYSKDYWSGKAFFD
THNINTSFTHPLKLSNPLLKSYVDGVYAGLIKTFREQCNW Run BLAST on NCBI transcript from alignment at sc0000005:172129..173563- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at sc0000005:172129..173563- (Clytia hemisphaerica)
TTTTCCAATGCCAGTTGGTGTTGTTAGCTTGCAGCAATGAAGTTCAGAAT
TCATAAGAGCAAAATTATTCTTTTATTTGGCTTATCCACATTTTGGATCT
TTGGGATATTTTTCTTCCGTTCTTTTAAAGGTATTTATTTTGGGCATTTT
AGGATGTTTGTTTTCGGCATGAAAAACGCCAAGCGCCCATCTTTCTATTT
TTTTCTATAACAAGAAAGAATTTACTTCAATTTCATCCATAACCTTTCAT
TGTATGTTGTTGTCCCTGTTTTTGTATATTGTTATTTCATTTGCATTTCT
TGAGTTTGCACCTCCTGCTGTCTGAAATCTTTTTTTTTTTTGCATAAAAA
CTTTGAATAGACCTTCCATTATATCTGTCTTGTCTATCGGCATTAAAAAA
TCTCTTTCTCTCAAAGAACAGCAAATACTGTGTAAGTAAACTTCATCTAT
GGACGCTTCTGTTATGTCCCGAGGTTTATCTTATATGTCTTCTCGTCTTT
AACAGGTGAACCATTGGTGAAGTACAATCAGAAATGCACTCACAAGCATA
CTTTACCACAGATGCTACTTGCTATAAACTTCAATTTCCCACACTACAAG
AACATACCAACATTGAAAAAGCTTTATGAACCCTTATTCAAGAAAGTCAT
TTTTTGTGGTGCAAAGGAAAATAAAACTTACGAGGCTGATTTACTTGTGG
TACAAGAGAATCGTGGGTACCAGGGCTATGTGTGTCTCATCAGAGCGATT
GAAAAATATCCAACTGGTTTTGTTGGATATCTTTATAGCAACGATGACGT
TATTTTAAATTTTTGGAATTTCAATGCAGACCCTCATAAAGTATGGCTTG
GAAAACGAATTCATAAAAGATTCATTCATCGACTTGGTTATGAACCACCA
AATTGGAGTTGGTTTAAGGGATTTGATGGTGCTAAAAGGTGCGAGAATGT
CTTCAGGAAGATCAACAATGGTTCCGTTAGCCAATTGATACCAGGAGAAT
CAAGAAATACGGACGCATCATTCATTACAAAAGCTTTAAAAGTTTTTAAA
CGGAATGTTAATTTTGAAAACACAAAAATTGTATGCGTTGTCGGTCGCTC
AGATTTAATATATATTCCAGCAATTCATTCGCAAGGGTTTAAAATCATTG
GAAATATCTACAACCGTGAAAAAGTTTTTTTGGAAATCGCAGTACCATCG
ATCACGCATTATTTGGATTTGAAGGAAAATTTCATTAATCTGAATGGGAA
CTATTACAATGATATTGTAGGGTACTCGAAAGATTATTGGAGTGGCAAAG
CATTTTTTGACACCCATAACATAAACACTTCATTCACACATCCGCTGAAA
TTATCTAATCCATTATTAAAATCGTATGTTGATGGAGTTTATGCGGGACT
GATTAAAACATTTAGAGAACAGTGCAATTGGTGAA Coding sequence (CDS) from alignment at sc0000005:172129..173563- >TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000005:172129..173563- (Clytia hemisphaerica)
GTGAACCATTGGTGAAGTACAATCAGAAATGCACTCACAAGCATACTTTA
CCACAGATGCTACTTGCTATAAACTTCAATTTCCCACACTACAAGAACAT
ACCAACATTGAAAAAGCTTTATGAACCCTTATTCAAGAAAGTCATTTTTT
GTGGTGCAAAGGAAAATAAAACTTACGAGGCTGATTTACTTGTGGTACAA
GAGAATCGTGGGTACCAGGGCTATGTGTGTCTCATCAGAGCGATTGAAAA
ATATCCAACTGGTTTTGTTGGATATCTTTATAGCAACGATGACGTTATTT
TAAATTTTTGGAATTTCAATGCAGACCCTCATAAAGTATGGCTTGGAAAA
CGAATTCATAAAAGATTCATTCATCGACTTGGTTATGAACCACCAAATTG
GAGTTGGTTTAAGGGATTTGATGGTGCTAAAAGGTGCGAGAATGTCTTCA
GGAAGATCAACAATGGTTCCGTTAGCCAATTGATACCAGGAGAATCAAGA
AATACGGACGCATCATTCATTACAAAAGCTTTAAAAGTTTTTAAACGGAA
TGTTAATTTTGAAAACACAAAAATTGTATGCGTTGTCGGTCGCTCAGATT
TAATATATATTCCAGCAATTCATTCGCAAGGGTTTAAAATCATTGGAAAT
ATCTACAACCGTGAAAAAGTTTTTTTGGAAATCGCAGTACCATCGATCAC
GCATTATTTGGATTTGAAGGAAAATTTCATTAATCTGAATGGGAACTATT
ACAATGATATTGTAGGGTACTCGAAAGATTATTGGAGTGGCAAAGCATTT
TTTGACACCCATAACATAAACACTTCATTCACACATCCGCTGAAATTATC
TAATCCATTATTAAAATCGTATGTTGATGGAGTTTATGCGGGACTGATTA
AAACATTTAGAGAACAGTGCAATTGGTGAATGAAGTTCAGAATTCATAAG
AGCAAAATTATTCTTTTATTTGGCTTATCCACATTTTGGATCTTTGGGAT
ATTTTTCTTCCGTTCTTTTAAAGGTGAACCATTGGTGAAGTACAATCAGA
AATGCACTCACAAGCATACTTTACCACAGATGCTACTTGCTATAAACTTC
AATTTCCCACACTACAAGAACATACCAACATTGAAAAAGCTTTATGAACC
CTTATTCAAGAAAGTCATTTTTTGTGGTGCAAAGGAAAATAAAACTTACG
AGGCTGATTTACTTGTGGTACAAGAGAATCGTGGGTACCAGGGCTATGTG
TGTCTCATCAGAGCGATTGAAAAATATCCAACTGGTTTTGTTGGATATCT
TTATAGCAACGATGACGTTATTTTAAATTTTTGGAATTTCAATGCAGACC
CTCATAAAGTATGGCTTGGAAAACGAATTCATAAAAGATTCATTCATCGA
CTTGGTTATGAACCACCAAATTGGAGTTGGTTTAAGGGATTTGATGGTGC
TAAAAGGTGCGAGAATGTCTTCAGGAAGATCAACAATGGTTCCGTTAGCC
AATTGATACCAGGAGAATCAAGAAATACGGACGCATCATTCATTACAAAA
GCTTTAAAAGTTTTTAAACGGAATGTTAATTTTGAAAACACAAAAATTGT
ATGCGTTGTCGGTCGCTCAGATTTAATATATATTCCAGCAATTCATTCGC
AAGGGTTTAAAATCATTGGAAATATCTACAACCGTGAAAAAGTTTTTTTG
GAAATCGCAGTACCATCGATCACGCATTATTTGGATTTGAAGGAAAATTT
CATTAATCTGAATGGGAACTATTACAATGATATTGTAGGGTACTCGAAAG
ATTATTGGAGTGGCAAAGCATTTTTTGACACCCATAACATAAACACTTCA
TTCACACATCCGCTGAAATTATCTAATCCATTATTAAAATCGTATGTTGA
TGGAGTTTATGCGGGACTGATTAAAACATTTAGAGAACAGTGCAATTGGT
GAATGAAGTTCAGAATTCATAAGAGCAAAATTATTCTTTTATTTGGCTTA
TCCACATTTTGGATCTTTGGGATATTTTTCTTCCGTTCTTTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000769-exon-sc0000005-1575043694:173434..173563 | TCONS_00000769-exon-sc0000005-1575043694:173434..173563 | Clytia hemisphaerica | exon |
| TCONS_00000769-exon-sc0000005-1575043694:172129..173058 | TCONS_00000769-exon-sc0000005-1575043694:172129..173058 | Clytia hemisphaerica | exon |
| TCONS_00000769-exon-sc0000005-1510915933:173434..173563 | TCONS_00000769-exon-sc0000005-1510915933:173434..173563 | Clytia hemisphaerica | exon |
| TCONS_00000769-exon-sc0000005-1510915933:172129..173058 | TCONS_00000769-exon-sc0000005-1510915933:172129..173058 | Clytia hemisphaerica | exon |
| TCONS_00000769-exon-sc0000005-1491911889:173434..173563 | TCONS_00000769-exon-sc0000005-1491911889:173434..173563 | Clytia hemisphaerica | exon |
| TCONS_00000769-exon-sc0000005-1491911889:172129..173058 | TCONS_00000769-exon-sc0000005-1491911889:172129..173058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:172129..173563 - |
Blast
The following BLAST results are available for this feature:
|
