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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=transcript|length=1060bp TTTTCCAATGCCAGTTGGTGTTGTTAGCTTGCAGCAATGAAGTTCAGAAT TCATAAGAGcaaaattattcttttatttggcTTATCCACATTTTGGATCT TTGGGATATTTTTCTTCCGTTCTTTTAAAGGTGAACCATTGGTGAAGTAC AATCAGAAATGCACTCACAAGCATACTTTACCACAGATGCTACTTGCTAT AAACTTCAATTTCCCACACTACAAGAACATACCAACATTGAAAAAGCTTT ATGAACCCTTATTCAAGAAAGTCATTTTTTGTGGTGCAAAGGAAAATAAA ACTTACGAGGCTGATTTACTTGTGGTACAAGAGAATCGTGGGTACCAGGG CTATGTGTGTCTCATCagagcgattgaaaaatatccAACTGGTTTTGTTG GATATCTTTATAGCAACGATGAcgttattttaaatttttggaatttcaat gCAGACCCTCATAAAGTATGGCTTGGAAAACGAATTCATAAAAGATTCAT TCATCGACTTGGTTATGAACCACCAAATTGGAGTTGGTTTAAGGGATTTG ATGGTGCTAAAAGGTGCGAGAATGTCTTCAGGAAGATCAACAATGGTTCC GTTAGCCAATTGATACCAGGAGAATCAAGAAATACGGACGCATCATTCAT TACAAaagctttaaaagtttttaaacggaatgttaattttgaaaacacaa aaattgtaTGCGTTGTCGGTCGCTCAGATTTAATATATATTCCAGCAATT CATTCGCAAGGGTTTAAAATCATTGGAAATATCTACAAccgtgaaaaagt ttttttggaaatcgcAGTACCATCGATCACGCATTATTTGGAtttgaagg aaaatttcattaatCTGAATGGGAACTATTACAATGATATTGTAGGGTAC TCGAAAGATTATTGGAGTGGCAAAGCATTTTTTGACACCCATAACATAAA CACTTCATTCACACATCCGCTGAAATTATCTAATCCATTATTAAAATCGT ATGTTGATGGAGTTTATGCGGGACTGATTAAAACATTTAGAGAACAGTGC AATTGGTGAA Run BLAST on NCBI protein sequence of TCONS_00000769-protein >TCONS_00000769-protein ID=TCONS_00000769-protein|Name=TCONS_00000769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MKFRIHKSKIILLFGLSTFWIFGIFFFRSFKGEPLVKYNQKCTHKHTLPQ MLLAINFNFPHYKNIPTLKKLYEPLFKKVIFCGAKENKTYEADLLVVQEN RGYQGYVCLIRAIEKYPTGFVGYLYSNDDVILNFWNFNADPHKVWLGKRI HKRFIHRLGYEPPNWSWFKGFDGAKRCENVFRKINNGSVSQLIPGESRNT DASFITKALKVFKRNVNFENTKIVCVVGRSDLIYIPAIHSQGFKIIGNIY NREKVFLEIAVPSITHYLDLKENFINLNGNYYNDIVGYSKDYWSGKAFFD THNINTSFTHPLKLSNPLLKSYVDGVYAGLIKTFREQCNW Run BLAST on NCBI transcript from alignment at sc0000005:172129..173563- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at sc0000005:172129..173563- (Clytia hemisphaerica) TTTTCCAATGCCAGTTGGTGTTGTTAGCTTGCAGCAATGAAGTTCAGAAT
TCATAAGAGCAAAATTATTCTTTTATTTGGCTTATCCACATTTTGGATCT
TTGGGATATTTTTCTTCCGTTCTTTTAAAGGTATTTATTTTGGGCATTTT
AGGATGTTTGTTTTCGGCATGAAAAACGCCAAGCGCCCATCTTTCTATTT
TTTTCTATAACAAGAAAGAATTTACTTCAATTTCATCCATAACCTTTCAT
TGTATGTTGTTGTCCCTGTTTTTGTATATTGTTATTTCATTTGCATTTCT
TGAGTTTGCACCTCCTGCTGTCTGAAATCTTTTTTTTTTTTGCATAAAAA
CTTTGAATAGACCTTCCATTATATCTGTCTTGTCTATCGGCATTAAAAAA
TCTCTTTCTCTCAAAGAACAGCAAATACTGTGTAAGTAAACTTCATCTAT
GGACGCTTCTGTTATGTCCCGAGGTTTATCTTATATGTCTTCTCGTCTTT
AACAGGTGAACCATTGGTGAAGTACAATCAGAAATGCACTCACAAGCATA
CTTTACCACAGATGCTACTTGCTATAAACTTCAATTTCCCACACTACAAG
AACATACCAACATTGAAAAAGCTTTATGAACCCTTATTCAAGAAAGTCAT
TTTTTGTGGTGCAAAGGAAAATAAAACTTACGAGGCTGATTTACTTGTGG
TACAAGAGAATCGTGGGTACCAGGGCTATGTGTGTCTCATCAGAGCGATT
GAAAAATATCCAACTGGTTTTGTTGGATATCTTTATAGCAACGATGACGT
TATTTTAAATTTTTGGAATTTCAATGCAGACCCTCATAAAGTATGGCTTG
GAAAACGAATTCATAAAAGATTCATTCATCGACTTGGTTATGAACCACCA
AATTGGAGTTGGTTTAAGGGATTTGATGGTGCTAAAAGGTGCGAGAATGT
CTTCAGGAAGATCAACAATGGTTCCGTTAGCCAATTGATACCAGGAGAAT
CAAGAAATACGGACGCATCATTCATTACAAAAGCTTTAAAAGTTTTTAAA
CGGAATGTTAATTTTGAAAACACAAAAATTGTATGCGTTGTCGGTCGCTC
AGATTTAATATATATTCCAGCAATTCATTCGCAAGGGTTTAAAATCATTG
GAAATATCTACAACCGTGAAAAAGTTTTTTTGGAAATCGCAGTACCATCG
ATCACGCATTATTTGGATTTGAAGGAAAATTTCATTAATCTGAATGGGAA
CTATTACAATGATATTGTAGGGTACTCGAAAGATTATTGGAGTGGCAAAG
CATTTTTTGACACCCATAACATAAACACTTCATTCACACATCCGCTGAAA
TTATCTAATCCATTATTAAAATCGTATGTTGATGGAGTTTATGCGGGACT
GATTAAAACATTTAGAGAACAGTGCAATTGGTGAA Coding sequence (CDS) from alignment at sc0000005:172129..173563- >TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000005:172129..173563- (Clytia hemisphaerica) GTGAACCATTGGTGAAGTACAATCAGAAATGCACTCACAAGCATACTTTA CCACAGATGCTACTTGCTATAAACTTCAATTTCCCACACTACAAGAACAT ACCAACATTGAAAAAGCTTTATGAACCCTTATTCAAGAAAGTCATTTTTT GTGGTGCAAAGGAAAATAAAACTTACGAGGCTGATTTACTTGTGGTACAA GAGAATCGTGGGTACCAGGGCTATGTGTGTCTCATCAGAGCGATTGAAAA ATATCCAACTGGTTTTGTTGGATATCTTTATAGCAACGATGACGTTATTT TAAATTTTTGGAATTTCAATGCAGACCCTCATAAAGTATGGCTTGGAAAA CGAATTCATAAAAGATTCATTCATCGACTTGGTTATGAACCACCAAATTG GAGTTGGTTTAAGGGATTTGATGGTGCTAAAAGGTGCGAGAATGTCTTCA GGAAGATCAACAATGGTTCCGTTAGCCAATTGATACCAGGAGAATCAAGA AATACGGACGCATCATTCATTACAAAAGCTTTAAAAGTTTTTAAACGGAA TGTTAATTTTGAAAACACAAAAATTGTATGCGTTGTCGGTCGCTCAGATT TAATATATATTCCAGCAATTCATTCGCAAGGGTTTAAAATCATTGGAAAT ATCTACAACCGTGAAAAAGTTTTTTTGGAAATCGCAGTACCATCGATCAC GCATTATTTGGATTTGAAGGAAAATTTCATTAATCTGAATGGGAACTATT ACAATGATATTGTAGGGTACTCGAAAGATTATTGGAGTGGCAAAGCATTT TTTGACACCCATAACATAAACACTTCATTCACACATCCGCTGAAATTATC TAATCCATTATTAAAATCGTATGTTGATGGAGTTTATGCGGGACTGATTA AAACATTTAGAGAACAGTGCAATTGGTGAATGAAGTTCAGAATTCATAAG AGCAAAATTATTCTTTTATTTGGCTTATCCACATTTTGGATCTTTGGGAT ATTTTTCTTCCGTTCTTTTAAAGGTGAACCATTGGTGAAGTACAATCAGA AATGCACTCACAAGCATACTTTACCACAGATGCTACTTGCTATAAACTTC AATTTCCCACACTACAAGAACATACCAACATTGAAAAAGCTTTATGAACC CTTATTCAAGAAAGTCATTTTTTGTGGTGCAAAGGAAAATAAAACTTACG AGGCTGATTTACTTGTGGTACAAGAGAATCGTGGGTACCAGGGCTATGTG TGTCTCATCAGAGCGATTGAAAAATATCCAACTGGTTTTGTTGGATATCT TTATAGCAACGATGACGTTATTTTAAATTTTTGGAATTTCAATGCAGACC CTCATAAAGTATGGCTTGGAAAACGAATTCATAAAAGATTCATTCATCGA CTTGGTTATGAACCACCAAATTGGAGTTGGTTTAAGGGATTTGATGGTGC TAAAAGGTGCGAGAATGTCTTCAGGAAGATCAACAATGGTTCCGTTAGCC AATTGATACCAGGAGAATCAAGAAATACGGACGCATCATTCATTACAAAA GCTTTAAAAGTTTTTAAACGGAATGTTAATTTTGAAAACACAAAAATTGT ATGCGTTGTCGGTCGCTCAGATTTAATATATATTCCAGCAATTCATTCGC AAGGGTTTAAAATCATTGGAAATATCTACAACCGTGAAAAAGTTTTTTTG GAAATCGCAGTACCATCGATCACGCATTATTTGGATTTGAAGGAAAATTT CATTAATCTGAATGGGAACTATTACAATGATATTGTAGGGTACTCGAAAG ATTATTGGAGTGGCAAAGCATTTTTTGACACCCATAACATAAACACTTCA TTCACACATCCGCTGAAATTATCTAATCCATTATTAAAATCGTATGTTGA TGGAGTTTATGCGGGACTGATTAAAACATTTAGAGAACAGTGCAATTGGT GAATGAAGTTCAGAATTCATAAGAGCAAAATTATTCTTTTATTTGGCTTA TCCACATTTTGGATCTTTGGGATATTTTTCTTCCGTTCTTTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000769-exon-sc0000005-1575043694:173434..173563 | TCONS_00000769-exon-sc0000005-1575043694:173434..173563 | Clytia hemisphaerica | exon |
TCONS_00000769-exon-sc0000005-1575043694:172129..173058 | TCONS_00000769-exon-sc0000005-1575043694:172129..173058 | Clytia hemisphaerica | exon |
TCONS_00000769-exon-sc0000005-1510915933:173434..173563 | TCONS_00000769-exon-sc0000005-1510915933:173434..173563 | Clytia hemisphaerica | exon |
TCONS_00000769-exon-sc0000005-1510915933:172129..173058 | TCONS_00000769-exon-sc0000005-1510915933:172129..173058 | Clytia hemisphaerica | exon |
TCONS_00000769-exon-sc0000005-1491911889:173434..173563 | TCONS_00000769-exon-sc0000005-1491911889:173434..173563 | Clytia hemisphaerica | exon |
TCONS_00000769-exon-sc0000005-1491911889:172129..173058 | TCONS_00000769-exon-sc0000005-1491911889:172129..173058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000005 | supercontig | sc0000005:172129..173563 - |
Blast
The following BLAST results are available for this feature:
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