TCONS_00000769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000769
Unique NameTCONS_00000769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1060

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=transcript|length=1060bp
TTTTCCAATGCCAGTTGGTGTTGTTAGCTTGCAGCAATGAAGTTCAGAAT
TCATAAGAGcaaaattattcttttatttggcTTATCCACATTTTGGATCT
TTGGGATATTTTTCTTCCGTTCTTTTAAAGGTGAACCATTGGTGAAGTAC
AATCAGAAATGCACTCACAAGCATACTTTACCACAGATGCTACTTGCTAT
AAACTTCAATTTCCCACACTACAAGAACATACCAACATTGAAAAAGCTTT
ATGAACCCTTATTCAAGAAAGTCATTTTTTGTGGTGCAAAGGAAAATAAA
ACTTACGAGGCTGATTTACTTGTGGTACAAGAGAATCGTGGGTACCAGGG
CTATGTGTGTCTCATCagagcgattgaaaaatatccAACTGGTTTTGTTG
GATATCTTTATAGCAACGATGAcgttattttaaatttttggaatttcaat
gCAGACCCTCATAAAGTATGGCTTGGAAAACGAATTCATAAAAGATTCAT
TCATCGACTTGGTTATGAACCACCAAATTGGAGTTGGTTTAAGGGATTTG
ATGGTGCTAAAAGGTGCGAGAATGTCTTCAGGAAGATCAACAATGGTTCC
GTTAGCCAATTGATACCAGGAGAATCAAGAAATACGGACGCATCATTCAT
TACAAaagctttaaaagtttttaaacggaatgttaattttgaaaacacaa
aaattgtaTGCGTTGTCGGTCGCTCAGATTTAATATATATTCCAGCAATT
CATTCGCAAGGGTTTAAAATCATTGGAAATATCTACAAccgtgaaaaagt
ttttttggaaatcgcAGTACCATCGATCACGCATTATTTGGAtttgaagg
aaaatttcattaatCTGAATGGGAACTATTACAATGATATTGTAGGGTAC
TCGAAAGATTATTGGAGTGGCAAAGCATTTTTTGACACCCATAACATAAA
CACTTCATTCACACATCCGCTGAAATTATCTAATCCATTATTAAAATCGT
ATGTTGATGGAGTTTATGCGGGACTGATTAAAACATTTAGAGAACAGTGC
AATTGGTGAA
Run BLAST on NCBI

protein sequence of TCONS_00000769-protein

>TCONS_00000769-protein ID=TCONS_00000769-protein|Name=TCONS_00000769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MKFRIHKSKIILLFGLSTFWIFGIFFFRSFKGEPLVKYNQKCTHKHTLPQ
MLLAINFNFPHYKNIPTLKKLYEPLFKKVIFCGAKENKTYEADLLVVQEN
RGYQGYVCLIRAIEKYPTGFVGYLYSNDDVILNFWNFNADPHKVWLGKRI
HKRFIHRLGYEPPNWSWFKGFDGAKRCENVFRKINNGSVSQLIPGESRNT
DASFITKALKVFKRNVNFENTKIVCVVGRSDLIYIPAIHSQGFKIIGNIY
NREKVFLEIAVPSITHYLDLKENFINLNGNYYNDIVGYSKDYWSGKAFFD
THNINTSFTHPLKLSNPLLKSYVDGVYAGLIKTFREQCNW
Run BLAST on NCBI

transcript from alignment at sc0000005:172129..173563-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at sc0000005:172129..173563- (Clytia hemisphaerica)
TTTTCCAATGCCAGTTGGTGTTGTTAGCTTGCAGCAATGAAGTTCAGAAT TCATAAGAGCAAAATTATTCTTTTATTTGGCTTATCCACATTTTGGATCT TTGGGATATTTTTCTTCCGTTCTTTTAAAGGTATTTATTTTGGGCATTTT AGGATGTTTGTTTTCGGCATGAAAAACGCCAAGCGCCCATCTTTCTATTT TTTTCTATAACAAGAAAGAATTTACTTCAATTTCATCCATAACCTTTCAT TGTATGTTGTTGTCCCTGTTTTTGTATATTGTTATTTCATTTGCATTTCT TGAGTTTGCACCTCCTGCTGTCTGAAATCTTTTTTTTTTTTGCATAAAAA CTTTGAATAGACCTTCCATTATATCTGTCTTGTCTATCGGCATTAAAAAA TCTCTTTCTCTCAAAGAACAGCAAATACTGTGTAAGTAAACTTCATCTAT GGACGCTTCTGTTATGTCCCGAGGTTTATCTTATATGTCTTCTCGTCTTT AACAGGTGAACCATTGGTGAAGTACAATCAGAAATGCACTCACAAGCATA CTTTACCACAGATGCTACTTGCTATAAACTTCAATTTCCCACACTACAAG AACATACCAACATTGAAAAAGCTTTATGAACCCTTATTCAAGAAAGTCAT TTTTTGTGGTGCAAAGGAAAATAAAACTTACGAGGCTGATTTACTTGTGG TACAAGAGAATCGTGGGTACCAGGGCTATGTGTGTCTCATCAGAGCGATT GAAAAATATCCAACTGGTTTTGTTGGATATCTTTATAGCAACGATGACGT TATTTTAAATTTTTGGAATTTCAATGCAGACCCTCATAAAGTATGGCTTG GAAAACGAATTCATAAAAGATTCATTCATCGACTTGGTTATGAACCACCA AATTGGAGTTGGTTTAAGGGATTTGATGGTGCTAAAAGGTGCGAGAATGT CTTCAGGAAGATCAACAATGGTTCCGTTAGCCAATTGATACCAGGAGAAT CAAGAAATACGGACGCATCATTCATTACAAAAGCTTTAAAAGTTTTTAAA CGGAATGTTAATTTTGAAAACACAAAAATTGTATGCGTTGTCGGTCGCTC AGATTTAATATATATTCCAGCAATTCATTCGCAAGGGTTTAAAATCATTG GAAATATCTACAACCGTGAAAAAGTTTTTTTGGAAATCGCAGTACCATCG ATCACGCATTATTTGGATTTGAAGGAAAATTTCATTAATCTGAATGGGAA CTATTACAATGATATTGTAGGGTACTCGAAAGATTATTGGAGTGGCAAAG CATTTTTTGACACCCATAACATAAACACTTCATTCACACATCCGCTGAAA TTATCTAATCCATTATTAAAATCGTATGTTGATGGAGTTTATGCGGGACT GATTAAAACATTTAGAGAACAGTGCAATTGGTGAA

Coding sequence (CDS) from alignment at sc0000005:172129..173563-

>TCONS_00000769 ID=TCONS_00000769|Name=TCONS_00000769|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000005:172129..173563- (Clytia hemisphaerica)
GTGAACCATTGGTGAAGTACAATCAGAAATGCACTCACAAGCATACTTTA
CCACAGATGCTACTTGCTATAAACTTCAATTTCCCACACTACAAGAACAT
ACCAACATTGAAAAAGCTTTATGAACCCTTATTCAAGAAAGTCATTTTTT
GTGGTGCAAAGGAAAATAAAACTTACGAGGCTGATTTACTTGTGGTACAA
GAGAATCGTGGGTACCAGGGCTATGTGTGTCTCATCAGAGCGATTGAAAA
ATATCCAACTGGTTTTGTTGGATATCTTTATAGCAACGATGACGTTATTT
TAAATTTTTGGAATTTCAATGCAGACCCTCATAAAGTATGGCTTGGAAAA
CGAATTCATAAAAGATTCATTCATCGACTTGGTTATGAACCACCAAATTG
GAGTTGGTTTAAGGGATTTGATGGTGCTAAAAGGTGCGAGAATGTCTTCA
GGAAGATCAACAATGGTTCCGTTAGCCAATTGATACCAGGAGAATCAAGA
AATACGGACGCATCATTCATTACAAAAGCTTTAAAAGTTTTTAAACGGAA
TGTTAATTTTGAAAACACAAAAATTGTATGCGTTGTCGGTCGCTCAGATT
TAATATATATTCCAGCAATTCATTCGCAAGGGTTTAAAATCATTGGAAAT
ATCTACAACCGTGAAAAAGTTTTTTTGGAAATCGCAGTACCATCGATCAC
GCATTATTTGGATTTGAAGGAAAATTTCATTAATCTGAATGGGAACTATT
ACAATGATATTGTAGGGTACTCGAAAGATTATTGGAGTGGCAAAGCATTT
TTTGACACCCATAACATAAACACTTCATTCACACATCCGCTGAAATTATC
TAATCCATTATTAAAATCGTATGTTGATGGAGTTTATGCGGGACTGATTA
AAACATTTAGAGAACAGTGCAATTGGTGAATGAAGTTCAGAATTCATAAG
AGCAAAATTATTCTTTTATTTGGCTTATCCACATTTTGGATCTTTGGGAT
ATTTTTCTTCCGTTCTTTTAAAGGTGAACCATTGGTGAAGTACAATCAGA
AATGCACTCACAAGCATACTTTACCACAGATGCTACTTGCTATAAACTTC
AATTTCCCACACTACAAGAACATACCAACATTGAAAAAGCTTTATGAACC
CTTATTCAAGAAAGTCATTTTTTGTGGTGCAAAGGAAAATAAAACTTACG
AGGCTGATTTACTTGTGGTACAAGAGAATCGTGGGTACCAGGGCTATGTG
TGTCTCATCAGAGCGATTGAAAAATATCCAACTGGTTTTGTTGGATATCT
TTATAGCAACGATGACGTTATTTTAAATTTTTGGAATTTCAATGCAGACC
CTCATAAAGTATGGCTTGGAAAACGAATTCATAAAAGATTCATTCATCGA
CTTGGTTATGAACCACCAAATTGGAGTTGGTTTAAGGGATTTGATGGTGC
TAAAAGGTGCGAGAATGTCTTCAGGAAGATCAACAATGGTTCCGTTAGCC
AATTGATACCAGGAGAATCAAGAAATACGGACGCATCATTCATTACAAAA
GCTTTAAAAGTTTTTAAACGGAATGTTAATTTTGAAAACACAAAAATTGT
ATGCGTTGTCGGTCGCTCAGATTTAATATATATTCCAGCAATTCATTCGC
AAGGGTTTAAAATCATTGGAAATATCTACAACCGTGAAAAAGTTTTTTTG
GAAATCGCAGTACCATCGATCACGCATTATTTGGATTTGAAGGAAAATTT
CATTAATCTGAATGGGAACTATTACAATGATATTGTAGGGTACTCGAAAG
ATTATTGGAGTGGCAAAGCATTTTTTGACACCCATAACATAAACACTTCA
TTCACACATCCGCTGAAATTATCTAATCCATTATTAAAATCGTATGTTGA
TGGAGTTTATGCGGGACTGATTAAAACATTTAGAGAACAGTGCAATTGGT
GAATGAAGTTCAGAATTCATAAGAGCAAAATTATTCTTTTATTTGGCTTA
TCCACATTTTGGATCTTTGGGATATTTTTCTTCCGTTCTTTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000475XLOC_000475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000769-proteinTCONS_00000769-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000769-exon-sc0000005-1575043694:173434..173563TCONS_00000769-exon-sc0000005-1575043694:173434..173563Clytia hemisphaericaexon
TCONS_00000769-exon-sc0000005-1575043694:172129..173058TCONS_00000769-exon-sc0000005-1575043694:172129..173058Clytia hemisphaericaexon
TCONS_00000769-exon-sc0000005-1510915933:173434..173563TCONS_00000769-exon-sc0000005-1510915933:173434..173563Clytia hemisphaericaexon
TCONS_00000769-exon-sc0000005-1510915933:172129..173058TCONS_00000769-exon-sc0000005-1510915933:172129..173058Clytia hemisphaericaexon
TCONS_00000769-exon-sc0000005-1491911889:173434..173563TCONS_00000769-exon-sc0000005-1491911889:173434..173563Clytia hemisphaericaexon
TCONS_00000769-exon-sc0000005-1491911889:172129..173058TCONS_00000769-exon-sc0000005-1491911889:172129..173058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:172129..173563 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.3017 16.9933 12.6032 10.991 0.224882 0.35541 1.17916 1.10392 0.983666 0.826791 1.43606 0.610829 0.970423 0.604676 0.639162 0.838345 1.47092 1.53972 0.930654 0.463744 0.967386 0.412875 16.7301 12.4288 1.43232 1.39816 1.82927 2.13526 5.92282 7.21302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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