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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000768 ID=TCONS_00000768|Name=TCONS_00000768|organism=Clytia hemisphaerica|type=transcript|length=1005bpRun BLAST on NCBI protein sequence of TCONS_00000768-protein >TCONS_00000768-protein ID=TCONS_00000768-protein|Name=TCONS_00000768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp MIFKHSSLSTKLFLRDVGVTLPEEITKLHFLRQGAILAAAGSNIYILKPYRun BLAST on NCBI transcript from alignment at sc0000005:154982..192193- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000768 ID=TCONS_00000768|Name=TCONS_00000768|organism=Clytia hemisphaerica|type=transcript|length=37212bp|location=Sequence derived from alignment at sc0000005:154982..192193- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:154982..192193- >TCONS_00000768 ID=TCONS_00000768|Name=TCONS_00000768|organism=Clytia hemisphaerica|type=CDS|length=7749bp|location=Sequence derived from alignment at sc0000005:154982..192193- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000768 vs. Swiss-Prot (Human)
Match: WDR36 (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 1.062e-82 Identity = 125/266 (46.99%), Postives = 179/266 (67.29%), Query Frame = 3
Query: 156 KLFLRDVGVTLPEEITKLHFLRQGAILAAAGSNIYILKPYKHHVLAVYSEHNADIHTLVSLGDHVVSIDEDNVLNVWSSARADNRETYLNFALDKDVFSITCCIHPSTYLNKILLGSKQGKLQLWNIRTNKMIHEFKGWEEPVVVMEQSPAIDVIGIGLQSGHVILYNIKFEKKLMSFHQDFGNITSIAFRTDGQPVMATGSTIGHVTFWDLEKKRLITVLRHAHVNSVSGMKFLQRQPTMITSSPDNSLKMWIFDNPDGSARLLR 953
KL L V ++P++I + G ++ AA N++ ++ + H A+IH L GDH++S+D D +L +W + E YL DK VF I+ +HPSTYLNKILLGS+QG LQLWN+++NK+++ F GW+ V ++Q+PA+DV+ IGL SG VI++NIKF + LM F QD+G ITSI+FRTDG PVMA GS GH+ WDLE K+LI +R+AH +++G+ FL R+P ++T+ DN+L++WIFD P G RLLR
Sbjct: 113 KLSLVAVSNSVPQDICCMA--ADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIW---HIYSEEEYLQLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFPGWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDWGPITSISFRTDGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFDGPTGEGRLLR 373 The following BLAST results are available for this feature:
BLAST of TCONS_00000768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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