TCONS_00000755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000755
Unique NameTCONS_00000755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000755 ID=TCONS_00000755|Name=TCONS_00000755|organism=Clytia hemisphaerica|type=transcript|length=684bp
GAATAGAAAATGACGTAATCCTTCCTCAAATGAAGATGGTAGACTGACTG
TTATCGCGAAAAGAGTACACATTTTTCCTGTTGTATCAGGTTGTATACTG
CACTGCTTTCTGGCTGGCTTTCACCTTTATTTAGCTTCACCTTGTTTTAT
TCTTTTGGTATAATTTTTGATTGCAGTACTTGTTTCACTTGCCCTGCTCG
ATAAATAGAACACACGGGGCATGACACACACATCAACCCAAGTAAGTGCA
CACACAGTATAGTAACAACCATATCATCCAGAAGAAAACCCTGCCGACGA
TGACGCACCGGACTTTTTTTACCACCAGACAATCTCTACACTGGACTTAA
GGGAGTCGGATGCCCGGTGTTGGAGAAGGATATTCTTTCCCACTGGACGG
ACAATCATAATCAAGACTCTTGACGGACAATCAAGAGTACAAGACACCGA
CCGGACAtgcatgaccagtccgaaaatctAAATGGAGAGGAGTACAAATC
ATGAGCGTGATAGAGATCTTGAATTGGAAGAAGTACAAGGAATTGAGATT
GCAGAAGGAAAGAAGGaaaactaaacataaaaaactgaaagaaagaGTGA
TTCGTGTGAAAAGAAATGCTGATGGTTCAAGAGCATACCCGTTTGCTGGA
CAAAGAAAGAAGTGTAGAAAAAATTTACAAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000005:10833..16008-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000755 ID=TCONS_00000755|Name=TCONS_00000755|organism=Clytia hemisphaerica|type=transcript|length=5176bp|location=Sequence derived from alignment at sc0000005:10833..16008- (Clytia hemisphaerica)
GAATAGAAAATGACGTAATCCTTCCTCAAATGAAGATGGTAGACTGACTG
TTATCGCGAAAAGAGTACACATTTTTCCTGTTGTATCAGGTTGTATACTG
CACTGCTTTCTGGCTGGCTTTCACCTTTATTTAGCTTCACCTTGTTTTAT
TCTTTTGGTATAATTTTTGATTGCAGTACTTGTTTCACTTGCCCTGCTCG
ATAAATAGAACACACGGGGCATGACACACACATCAACCCAAGTAAGTGCA
CACACAGTATAGTAACAACCATATCATCCAGAAGAAAACCCTGCCGACGA
TGACGCACCGGACTTTTTTTACCACCAGACAATCTCTACACTGGACTTAA
GGGAGTCGGATGCCCGGTGTTGGAGAAGGATATTCTTTCCCACTGGACGG
ACAATCATAATCAAGACTCTTGACGGACAATCAAGAGTACAAGACACCGA
CCGGACATGCATGACCAGTCCGGTGCGTCCGGTGTTTCTTAATTTTTTGT
TTCATAAATGTCCGGACTTATAGACCTTTTTTTAAAGAGGCCACCCTGTT
GAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATGCATAATT
ATTACAATATGCATGATACAGTAATTACGCATGGCTCTATCGTTGTTTTC
ATGGCTGGACTACATAATTATTCAACAGGATGTCCTCTTTGAAAAAAGGT
CTATTGCGTCTGGTGTAGCGAAAGGATACTTTTTGCCACCGGACGAATAC
ACCGGACAGTCCGGTGCGTTGGGCGGCAGGGTCCTTCCACCAGCTGCAAC
GTTGCTTGAAGGTACTGGTACATGTATGATGAACAGAACATAAAACAACA
AACTGACCGAAAACCACATCAATAATCAGCCAAAAATTGTCTGACCGTTA
AAATGAAGGAAGATTGTGCAGCAGTTCTTAAAAACTCCCATTTTTGCTAG
TCCAGGGTCTGGAGCTCAACTATTTTTTGCCTTTGATAATCTGATGGTGG
AAAAAATAGAGATAGATTTATATAGATTTTCTGACTACATTTTTGCAGCC
TTTCAGGGGTGCTTATTGAATGATAATGATTCCCCCCTGTTGTCAAATGC
ATCCACTGAAATTTCTTTTTTTCTTCTCAGTTCTTCTCATTAAATTTATT
ATTTAAAATTTGATTTTAAACACCTAAAAAAGGCTGCTAACATGATTGTC
CGATATTCTCGTTCTTGTTCTTCTCGTTCTTGTCAAATATATTTTCAGCA
TATGTAACTTCTTTTGTATTGGCAACTAAATGCAGTTTACACCACGAAGT
CGGGTAATTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATGACTG
ACCAATCAAGATCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCAGC
TCTGCTCGCAGCTCTACTCTACCATTTTTATTTTTATTTAACTTTGTATT
TTAAGGAAAAAATTACTACACTTGATCATTCAATGACAAATTGATAACCA
ATCAATTGATTCCTATAATCAATAGGACGACCATCAAAAAACTATTCTGT
TTGTAACAGGTGTTAGAAATGCATGCAGGCGGGCAGACAGTCTTTTGGAA
AGATTCCCCAGGGATTCCCTCTGCGCCAGGAACTGGAACGCTAGAACTTT
CTGAAAAATTGCTAGAACAGCCGAAAATCACTAGGAAACCATTCGCTTGC
CTGTTCTTTTTTCACGATTTTTTCCATTATAACTACAGTTGACTTTCCAC
AAAGTCTATCCTCTTCAACTCAATTATTTCAATAAACTCAAACGATTTTT
TCCGGTCTCTTGAGGGGTTTTTTAGGCTATTTATGCCTCTCTATAACTGG
AATTGCTGTAACTCAAACGATTACTGATTTATTATCCCTGTTGGCATTCC
ATCACTGAACTGTATTATTATACTTCCCTACTTATATACTCAAAATCTAA
TCATCAGGTAGGTCCAATCAGTGTCGGGCTTGTTTTTCACCAATTGGTTA
ACGATTGTGATCAATTGATCATACTATAGTCAATCATGTTCAATCAATCA
AGTGATAGGCAATCAAGCCTCCCTTAAAATCCTGATTAATGGATTTCAAT
TATTGGACTCAATCGATTGGTTATCGATTGGTCATCGATTGGAAAAGTTA
TTAATTGTATCGAGTGATAGAGTCTGGTCTAGGTAACAGCTGTGTTGTAA
AACATGGATTTAGAGGACATCATCATAAAAAATTTATGCTGTAGTAATTA
GTTTTTCAATAGACTTCTCCTAGGCAAATAATGTAGCTTTGGCGTAGCTT
TGCATTATTTCAAGACTTGAGGTGCTTTCATCTTTGTGCGCTTGTACCAT
GGAACATCTTCTAATGCGCAATCTCGGGCATAAAAATCTGCTGAGAGGGT
CCTTGTGGGGAAAACTGACAGTGCTGTTTGAGAAAGTTGTTTGGCTCCTG
TCACCTAACTGACCCTGACTTCTACTGAAAAACTACTGTCAGTTTCTACT
GAAAATTAGAGTCATAGAGTAAGAAAGTACTTTGCTTAGATTAATGAACT
GGTGGGGATGGGGGGTTCGAAATAAGAATGTCCTGGGTGAAAAATCTTCA
CAAAAATTTTTAATAAGCTTTATCAGGTCCAGAGAGTATTTGATTTTTAA
GATGTGTGTTTCAGTCTTTATTAAGAATTGTTTGAAGACATTTTGGTATT
TCGTAGTATCAAGTTTAAATCTGCCACTATGTAAAAAGCTGAAAAGTGTG
ATCACATACNTATTTCGTAGTATCAAGTTTAAATCTGCCACTATGTAAAA
AGCTGAAAAGTGTGATCACATACAAAAAGTGCCAGTTGTCAGTGTTTTGT
TTTTACAATTTTGTAAACATGTCTGTGATGTTTTAGATAAGTTCCATAAA
TCCAAAGTAGTAGCTAAAGATTTTGTTTGTAATTTATTACAATGGAATTT
AATCGTATAATTTGGGAAAATGCTTTTTTGAAATAATCTTTTGTCTTTCA
GAATGAAAAAGAATCATCAGATCTTAGTAACCATAACCAGTGAATGACAT
TATATCAGATGAGCTCATTATTACTAATTATTCTAATTTTATATTATCAG
TGGGAAAACATTATCATAATGGATTTGATGTGATNGTTGGAGAAGGATAT
TCTTTCCCACTGGACGGACAATCATAATCAAGACTCTTGACGGACAATCA
AGAGTACAAGACACCGACCGGACATGACCAGTCCGGTGCGTCCGGTGTTT
CTTAATTTTTTGTTTCATAAATGTCCGGCGTCCAATTCCCTGTATGCAAC
ACTGAGCTGACACCGGACTTATAGACCTTTTTTCAAAGAGGCCACCCTGT
TGAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATCATGCAT
AATTATTACAATATGCATGATGATACAGTAATTATGCATGGCTCTATCAT
TGTTTTCATGGCTGGACTACATAATTATTCAACAGGATGTCCTCTTTGAA
AAAAGGTCTATTGCGTCCGGTGTAGCGAAAGGATACTTTTTGCCACCGGA
CGAATAACCGGACAGTCCGGTGCGTCGGGCGGCAGGGTCCTTCCACCAGC
TGCAACGTTGCTTGAAGGTACTGGTACATGTATGAACAGAACATAAAACA
ACAAACTGACCGAAAACCACATCAATAATCAGCCAAAAATTGTCTGACTG
TTAAAATGAAGGAAGATTGTGCAGCAGCTCTTAAAAACTCCCATTTTTGC
TAGTCCAGGGTCTGGAGCTCAACTGTTTTTTGCCTTTGATAATCTGATGA
TGGAAAAAATAGAGATAGATTTATATAGATTTTCTGACTACATTTTTGCA
GCTTTTCAGGGGTGCTTATTGAATGATAATGATTCCCCCCTGTTGTCAAA
TGCATCCACTGAAATTTCTTTTTTTCTTCTCAGTTCTTCTCATTAAAATT
TATTATTTAAAATTTGATTTTAAACACCTAAAAAAGGCTGCTAACATGAT
TGTCCGATATTCTCGTTCTTGTTCTTCTCGTTCTTGTCAAATATATTTTC
AGCATATGTAACTTCTTTTGTATTGGCAACTAAATGCAGTTTACACCACG
AAGTCGGGTAATTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATG
ACTGACCAATCAAGATCAAAGCAGCAAAATTTCAAAACAAATGAACTACG
CAGCTCTGCTCGCAGCTCTACTCTACCATTTTTATTTTTATTTAACTTTG
TATAAGGAAAAAATTACTACACTTGATCATTCAATGACAAATTGATAACC
AATCAATTGATTCCTATAATCAATAGGACGACCATCAAAAAACTATTCTG
TTTGCAACTGTTTGCAACAGGTGTTAAAAATGCATGCAGGCGGGCAGACA
GTCTTTCGGAAAGATTCCCCAGGGATTCCCTCTGCGCCAGGAACTGGAAC
GCTTGAACTTTCTGAAAAATAGCTTTTTTGAAATAATCTTTTGTCTTTCA
GAATGAAAAAGAATCATCAGATCTTAGTAACCATAACCAGTGTATGACAT
TATATCAGATGAGCTCACTATTACTAATTATTCTAATTTTATATTATCAG
TGGGAAAACATTATCATAATGGATTTGATGTGATATTTACAGATAAATAG
AAAGTTTTGAATAAAGAACTTTAAAGTTTATCTTGACATCAAGATTTCCC
AAAGTTTAAGTAAACATCTCTAAAATTAAATCATTTCCATCTGCATAATA
ACTCATTATTTTGCTTGTACTGTGTGTACTGAAGGTACTTCAATATTTTA
CTTTTCTTTCTTTAAGAAAATCTAAATGGAGAGGAGTACAAATCATGAGC
GTGATAGAGATCTTGGTAAGTTAATGTGTATTCTTTTCAATAGTTTTTTT
TAATGCTTAACTTCAACTTATTGTTCTCCTATCTAAACTTTTAGAAAGCT
TGTATGTACATGGCGTGGTTGCCTTATCGTTGAACAGCATTTCTTTATTT
TTAAAATCCTTAGAATTGGAAGAAGTACAAGGAATTGAGATTGCAGAAGG
AAAGAAGGAAAACTAAACATAAAAAACTGAAAGAAAGAGTGATTCGTGTG
AAAAGAAATGCTGATGGTTCAAGAGCATACCCGTTTGCTGGACAAAGAAA
GAAGTGTAGAAAAAATTTACAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000469XLOC_000469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000755-exon-sc0000005-1575043694:15537..16008TCONS_00000755-exon-sc0000005-1575043694:15537..16008Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1575043694:11144..11192TCONS_00000755-exon-sc0000005-1575043694:11144..11192Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1575043694:10833..10995TCONS_00000755-exon-sc0000005-1575043694:10833..10995Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1510915933:15537..16008TCONS_00000755-exon-sc0000005-1510915933:15537..16008Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1510915933:11144..11192TCONS_00000755-exon-sc0000005-1510915933:11144..11192Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1510915933:10833..10995TCONS_00000755-exon-sc0000005-1510915933:10833..10995Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1491911889:15537..16008TCONS_00000755-exon-sc0000005-1491911889:15537..16008Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1491911889:11144..11192TCONS_00000755-exon-sc0000005-1491911889:11144..11192Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1491911889:10833..10995TCONS_00000755-exon-sc0000005-1491911889:10833..10995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:10833..16008 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.870353	0.713674	0.637272	0.704737	0.229678	0.0249383	1.53924	0.155237	0.668428	1.22576	0	0	0	0	0	0	0	0	0	0	0.117555	0.441586	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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