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TCONS_00000755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000755
Unique NameTCONS_00000755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000755 ID=TCONS_00000755|Name=TCONS_00000755|organism=Clytia hemisphaerica|type=transcript|length=684bp
GAATAGAAAATGACGTAATCCTTCCTCAAATGAAGATGGTAGACTGACTG
TTATCGCGAAAAGAGTACACATTTTTCCTGTTGTATCAGGTTGTATACTG
CACTGCTTTCTGGCTGGCTTTCACCTTTATTTAGCTTCACCTTGTTTTAT
TCTTTTGGTATAATTTTTGATTGCAGTACTTGTTTCACTTGCCCTGCTCG
ATAAATAGAACACACGGGGCATGACACACACATCAACCCAAGTAAGTGCA
CACACAGTATAGTAACAACCATATCATCCAGAAGAAAACCCTGCCGACGA
TGACGCACCGGACTTTTTTTACCACCAGACAATCTCTACACTGGACTTAA
GGGAGTCGGATGCCCGGTGTTGGAGAAGGATATTCTTTCCCACTGGACGG
ACAATCATAATCAAGACTCTTGACGGACAATCAAGAGTACAAGACACCGA
CCGGACAtgcatgaccagtccgaaaatctAAATGGAGAGGAGTACAAATC
ATGAGCGTGATAGAGATCTTGAATTGGAAGAAGTACAAGGAATTGAGATT
GCAGAAGGAAAGAAGGaaaactaaacataaaaaactgaaagaaagaGTGA
TTCGTGTGAAAAGAAATGCTGATGGTTCAAGAGCATACCCGTTTGCTGGA
CAAAGAAAGAAGTGTAGAAAAAATTTACAAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000005:10833..16008-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000755 ID=TCONS_00000755|Name=TCONS_00000755|organism=Clytia hemisphaerica|type=transcript|length=5176bp|location=Sequence derived from alignment at sc0000005:10833..16008- (Clytia hemisphaerica)
GAATAGAAAATGACGTAATCCTTCCTCAAATGAAGATGGTAGACTGACTG TTATCGCGAAAAGAGTACACATTTTTCCTGTTGTATCAGGTTGTATACTG CACTGCTTTCTGGCTGGCTTTCACCTTTATTTAGCTTCACCTTGTTTTAT TCTTTTGGTATAATTTTTGATTGCAGTACTTGTTTCACTTGCCCTGCTCG ATAAATAGAACACACGGGGCATGACACACACATCAACCCAAGTAAGTGCA CACACAGTATAGTAACAACCATATCATCCAGAAGAAAACCCTGCCGACGA TGACGCACCGGACTTTTTTTACCACCAGACAATCTCTACACTGGACTTAA GGGAGTCGGATGCCCGGTGTTGGAGAAGGATATTCTTTCCCACTGGACGG ACAATCATAATCAAGACTCTTGACGGACAATCAAGAGTACAAGACACCGA CCGGACATGCATGACCAGTCCGGTGCGTCCGGTGTTTCTTAATTTTTTGT TTCATAAATGTCCGGACTTATAGACCTTTTTTTAAAGAGGCCACCCTGTT GAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATGCATAATT ATTACAATATGCATGATACAGTAATTACGCATGGCTCTATCGTTGTTTTC ATGGCTGGACTACATAATTATTCAACAGGATGTCCTCTTTGAAAAAAGGT CTATTGCGTCTGGTGTAGCGAAAGGATACTTTTTGCCACCGGACGAATAC ACCGGACAGTCCGGTGCGTTGGGCGGCAGGGTCCTTCCACCAGCTGCAAC GTTGCTTGAAGGTACTGGTACATGTATGATGAACAGAACATAAAACAACA AACTGACCGAAAACCACATCAATAATCAGCCAAAAATTGTCTGACCGTTA AAATGAAGGAAGATTGTGCAGCAGTTCTTAAAAACTCCCATTTTTGCTAG TCCAGGGTCTGGAGCTCAACTATTTTTTGCCTTTGATAATCTGATGGTGG AAAAAATAGAGATAGATTTATATAGATTTTCTGACTACATTTTTGCAGCC TTTCAGGGGTGCTTATTGAATGATAATGATTCCCCCCTGTTGTCAAATGC ATCCACTGAAATTTCTTTTTTTCTTCTCAGTTCTTCTCATTAAATTTATT ATTTAAAATTTGATTTTAAACACCTAAAAAAGGCTGCTAACATGATTGTC CGATATTCTCGTTCTTGTTCTTCTCGTTCTTGTCAAATATATTTTCAGCA TATGTAACTTCTTTTGTATTGGCAACTAAATGCAGTTTACACCACGAAGT CGGGTAATTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATGACTG ACCAATCAAGATCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCAGC TCTGCTCGCAGCTCTACTCTACCATTTTTATTTTTATTTAACTTTGTATT TTAAGGAAAAAATTACTACACTTGATCATTCAATGACAAATTGATAACCA ATCAATTGATTCCTATAATCAATAGGACGACCATCAAAAAACTATTCTGT TTGTAACAGGTGTTAGAAATGCATGCAGGCGGGCAGACAGTCTTTTGGAA AGATTCCCCAGGGATTCCCTCTGCGCCAGGAACTGGAACGCTAGAACTTT CTGAAAAATTGCTAGAACAGCCGAAAATCACTAGGAAACCATTCGCTTGC CTGTTCTTTTTTCACGATTTTTTCCATTATAACTACAGTTGACTTTCCAC AAAGTCTATCCTCTTCAACTCAATTATTTCAATAAACTCAAACGATTTTT TCCGGTCTCTTGAGGGGTTTTTTAGGCTATTTATGCCTCTCTATAACTGG AATTGCTGTAACTCAAACGATTACTGATTTATTATCCCTGTTGGCATTCC ATCACTGAACTGTATTATTATACTTCCCTACTTATATACTCAAAATCTAA TCATCAGGTAGGTCCAATCAGTGTCGGGCTTGTTTTTCACCAATTGGTTA ACGATTGTGATCAATTGATCATACTATAGTCAATCATGTTCAATCAATCA AGTGATAGGCAATCAAGCCTCCCTTAAAATCCTGATTAATGGATTTCAAT TATTGGACTCAATCGATTGGTTATCGATTGGTCATCGATTGGAAAAGTTA TTAATTGTATCGAGTGATAGAGTCTGGTCTAGGTAACAGCTGTGTTGTAA AACATGGATTTAGAGGACATCATCATAAAAAATTTATGCTGTAGTAATTA GTTTTTCAATAGACTTCTCCTAGGCAAATAATGTAGCTTTGGCGTAGCTT TGCATTATTTCAAGACTTGAGGTGCTTTCATCTTTGTGCGCTTGTACCAT GGAACATCTTCTAATGCGCAATCTCGGGCATAAAAATCTGCTGAGAGGGT CCTTGTGGGGAAAACTGACAGTGCTGTTTGAGAAAGTTGTTTGGCTCCTG TCACCTAACTGACCCTGACTTCTACTGAAAAACTACTGTCAGTTTCTACT GAAAATTAGAGTCATAGAGTAAGAAAGTACTTTGCTTAGATTAATGAACT GGTGGGGATGGGGGGTTCGAAATAAGAATGTCCTGGGTGAAAAATCTTCA CAAAAATTTTTAATAAGCTTTATCAGGTCCAGAGAGTATTTGATTTTTAA GATGTGTGTTTCAGTCTTTATTAAGAATTGTTTGAAGACATTTTGGTATT TCGTAGTATCAAGTTTAAATCTGCCACTATGTAAAAAGCTGAAAAGTGTG ATCACATACNTATTTCGTAGTATCAAGTTTAAATCTGCCACTATGTAAAA AGCTGAAAAGTGTGATCACATACAAAAAGTGCCAGTTGTCAGTGTTTTGT TTTTACAATTTTGTAAACATGTCTGTGATGTTTTAGATAAGTTCCATAAA TCCAAAGTAGTAGCTAAAGATTTTGTTTGTAATTTATTACAATGGAATTT AATCGTATAATTTGGGAAAATGCTTTTTTGAAATAATCTTTTGTCTTTCA GAATGAAAAAGAATCATCAGATCTTAGTAACCATAACCAGTGAATGACAT TATATCAGATGAGCTCATTATTACTAATTATTCTAATTTTATATTATCAG TGGGAAAACATTATCATAATGGATTTGATGTGATNGTTGGAGAAGGATAT TCTTTCCCACTGGACGGACAATCATAATCAAGACTCTTGACGGACAATCA AGAGTACAAGACACCGACCGGACATGACCAGTCCGGTGCGTCCGGTGTTT CTTAATTTTTTGTTTCATAAATGTCCGGCGTCCAATTCCCTGTATGCAAC ACTGAGCTGACACCGGACTTATAGACCTTTTTTCAAAGAGGCCACCCTGT TGAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATCATGCAT AATTATTACAATATGCATGATGATACAGTAATTATGCATGGCTCTATCAT TGTTTTCATGGCTGGACTACATAATTATTCAACAGGATGTCCTCTTTGAA AAAAGGTCTATTGCGTCCGGTGTAGCGAAAGGATACTTTTTGCCACCGGA CGAATAACCGGACAGTCCGGTGCGTCGGGCGGCAGGGTCCTTCCACCAGC TGCAACGTTGCTTGAAGGTACTGGTACATGTATGAACAGAACATAAAACA ACAAACTGACCGAAAACCACATCAATAATCAGCCAAAAATTGTCTGACTG TTAAAATGAAGGAAGATTGTGCAGCAGCTCTTAAAAACTCCCATTTTTGC TAGTCCAGGGTCTGGAGCTCAACTGTTTTTTGCCTTTGATAATCTGATGA TGGAAAAAATAGAGATAGATTTATATAGATTTTCTGACTACATTTTTGCA GCTTTTCAGGGGTGCTTATTGAATGATAATGATTCCCCCCTGTTGTCAAA TGCATCCACTGAAATTTCTTTTTTTCTTCTCAGTTCTTCTCATTAAAATT TATTATTTAAAATTTGATTTTAAACACCTAAAAAAGGCTGCTAACATGAT TGTCCGATATTCTCGTTCTTGTTCTTCTCGTTCTTGTCAAATATATTTTC AGCATATGTAACTTCTTTTGTATTGGCAACTAAATGCAGTTTACACCACG AAGTCGGGTAATTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATG ACTGACCAATCAAGATCAAAGCAGCAAAATTTCAAAACAAATGAACTACG CAGCTCTGCTCGCAGCTCTACTCTACCATTTTTATTTTTATTTAACTTTG TATAAGGAAAAAATTACTACACTTGATCATTCAATGACAAATTGATAACC AATCAATTGATTCCTATAATCAATAGGACGACCATCAAAAAACTATTCTG TTTGCAACTGTTTGCAACAGGTGTTAAAAATGCATGCAGGCGGGCAGACA GTCTTTCGGAAAGATTCCCCAGGGATTCCCTCTGCGCCAGGAACTGGAAC GCTTGAACTTTCTGAAAAATAGCTTTTTTGAAATAATCTTTTGTCTTTCA GAATGAAAAAGAATCATCAGATCTTAGTAACCATAACCAGTGTATGACAT TATATCAGATGAGCTCACTATTACTAATTATTCTAATTTTATATTATCAG TGGGAAAACATTATCATAATGGATTTGATGTGATATTTACAGATAAATAG AAAGTTTTGAATAAAGAACTTTAAAGTTTATCTTGACATCAAGATTTCCC AAAGTTTAAGTAAACATCTCTAAAATTAAATCATTTCCATCTGCATAATA ACTCATTATTTTGCTTGTACTGTGTGTACTGAAGGTACTTCAATATTTTA CTTTTCTTTCTTTAAGAAAATCTAAATGGAGAGGAGTACAAATCATGAGC GTGATAGAGATCTTGGTAAGTTAATGTGTATTCTTTTCAATAGTTTTTTT TAATGCTTAACTTCAACTTATTGTTCTCCTATCTAAACTTTTAGAAAGCT TGTATGTACATGGCGTGGTTGCCTTATCGTTGAACAGCATTTCTTTATTT TTAAAATCCTTAGAATTGGAAGAAGTACAAGGAATTGAGATTGCAGAAGG AAAGAAGGAAAACTAAACATAAAAAACTGAAAGAAAGAGTGATTCGTGTG AAAAGAAATGCTGATGGTTCAAGAGCATACCCGTTTGCTGGACAAAGAAA GAAGTGTAGAAAAAATTTACAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000469XLOC_000469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000755-exon-sc0000005-1575043694:15537..16008TCONS_00000755-exon-sc0000005-1575043694:15537..16008Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1575043694:11144..11192TCONS_00000755-exon-sc0000005-1575043694:11144..11192Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1575043694:10833..10995TCONS_00000755-exon-sc0000005-1575043694:10833..10995Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1510915933:15537..16008TCONS_00000755-exon-sc0000005-1510915933:15537..16008Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1510915933:11144..11192TCONS_00000755-exon-sc0000005-1510915933:11144..11192Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1510915933:10833..10995TCONS_00000755-exon-sc0000005-1510915933:10833..10995Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1491911889:15537..16008TCONS_00000755-exon-sc0000005-1491911889:15537..16008Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1491911889:11144..11192TCONS_00000755-exon-sc0000005-1491911889:11144..11192Clytia hemisphaericaexon
TCONS_00000755-exon-sc0000005-1491911889:10833..10995TCONS_00000755-exon-sc0000005-1491911889:10833..10995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:10833..16008 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.870353 0.713674 0.637272 0.704737 0.229678 0.0249383 1.53924 0.155237 0.668428 1.22576 0 0 0 0 0 0 0 0 0 0 0.117555 0.441586 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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