TCONS_00000748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000748
Unique NameTCONS_00000748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000748 ID=TCONS_00000748|Name=TCONS_00000748|organism=Clytia hemisphaerica|type=transcript|length=1624bp
CCTACACGTGCTCAAATGCTAAAAGCAATCCGAGTTGTCATGTTCAATCA
ATTGGTCGGATTGATTTTCAGTTTTCCAATCTATTATTTTGTCGCAAAAC
GTGGTATGACTTATGATGCTGAAGATTTACCAACTTTCCAATGGTTTTTG
GTTGAaatgtttgtttatatttgggTTGAAGAATTTGGATTCTATTATTC
GCATCGCCTTGGACACCACCCACGCCTTTATAAACACATCCACAAGATTC
ACCACGAATGGACTGCACCAATCTCAATCATTGGAATCTACAATCACTGG
CTAGAACATATCGTTTCCAACATCTTGCCCGTCACTCTCGGCCCCCTGAT
CATGGGCTCTCATATGGGGTCGCTGGTGATGTGGACCTGCATTGCGATCA
CTTCAACACAAATTTCACACGGGGGTTACCATTTACCGTTATTGCCTTCA
CCCGAAGCACACGATTATCACCATTTGAAgtTCATCAATAATTTTGGTGT
TCTTGGCGTTCTTGACCGTTTGCACGGTACCGACAGTATGTTTGTCAAGT
CAAATGCGTACGACCGCCATATCCTCTTACTTGGATTGGAACCGGCAAAA
GCGCTTTTCCCTGATGATAAGAAAAAAGGATGcgagaaaaaaacgaatta
aaaaatgatataaacTTTTGCGTTTTATACCCtaaaaatccacaagtaat
gttTGGAATATGTtattcaaaaatcaaacaatATATGCATCGTATACcgt
aaaaattgtattttaagatTGTTATGTTTTATGCGTATAATGTACctatt
atgtttttattttttatctgtaTGTAATATTTCTAAAGCTTTCTTTTATA
ATcatctctctctaattcgaacctctactattcaaattcaaaaatattgc
cCCTGAGGGGGCTTAGCTTAAAAGAagtactctctgtaattcgaatcttt
cttcaACTCGAAGAAGATTTTcggtcccttgaaaatcgaattaaaaaGAG
AGTACTGTACTCATATTTTGGTTGGCTTTATTCTTCATCGATTCTTTCAT
AAAGCTGTTCTGAAAAGTTAAAGAtggattttttagaaattgtgGGTCAC
TAGAATCTACTAGAGTTAGAGAAACCAGCTCTAAATGAGAAAACATTTTG
GTGAAAATATCATAATTCAGAGCgagaaattttgtgaaatttagaAGCCC
GTTAGAAttacttttctttttggttttcGCAAAAATTCGATACTCTTGCA
GAGGTAATTATGGAAACAAACCAAACTTACCGTCCGCATACACCCAGCAG
TCAATTTTTCCCGAAACCCCTTATTTACTATTTTTGCAACCTTCGTTTCA
TATTATCAATGTAGAATGAAATTCTTTTGCTTTTCACGCCTCTTAACTTT
AGCCTAGTACTAGATTGAGTATTTGATATATGCTCACTATGTATGTACTT
ATCTTTAACTAATAGTTTGCAGAATAAAATAATATGTTTAGTTTTGTTAG
CAAAACTAGTTTGAGTTTTTATTGATTAATGCCCCCTACGCCCCCAGCGG
AGTTTCCGATCACATCATCACACAAAAAGATTGGACGTCATCATAcaaat
cttttttcttcatcttgCGCCGTA
Run BLAST on NCBI

transcript from alignment at sc0000005:1365490..1368218+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000748 ID=TCONS_00000748|Name=TCONS_00000748|organism=Clytia hemisphaerica|type=transcript|length=2729bp|location=Sequence derived from alignment at sc0000005:1365490..1368218+ (Clytia hemisphaerica)
CCTACACGTGCTCAAATGCTAAAAGCAATCCGAGTTGTCATGTTCAATCA ATTGGTCGGATTGATTTTCAGTTTTCCAATCTATTATTTTGTCGCAAAAC GTGGTATGACTTATGATGCTGAAGATTTACCAACTTTCCAATGGTTTTTG GTTGAaatgtttgtttatatttgggTTGAAGAATTTGGATTCTATTATTC GCATCGGTGAGTAGTTTTTCGTTTAAGgaggcccccccccagcggtatcc ctaatcacgccatcacgcaacacgaaaatcgctaaaatttgtcatcacgc aaaaaatagcgaaaaatagcccaaatcacgcatcacgcctcaaatatttg ccctatcacgcatcacgcaaaaatcttgatcacgtcatcgcgccaaaaaa aatctctagtcacgccatcacgcaagaaaaaagttccaatcacgccatca cgcaaaccgctgggttTAAGAGATGTATCAAGTATGGATAACATTCTCCA GATGCAAGAAATAAGAACTCGTTGTTATCATTTTAACAAAGCTTGTTGTT AGATgaaattttaactttattttttttaatctcgCTAAATTCTCTTACCT TTCTAAAAACTAACATTTACTAACATTTACCCCACTAGTGCTAAATTTAT GAAGAAATCCCATGGAAATGGCAGTTCTTTTCATCAATTTCCCAAATTAA AGGCTTGTAAGGCTAGGCACTACATCTTTCTCCTCTCGATTTATGATGGT TTGAATTTAAGACGAGTTGGACATTCTTACCTTATTTTGTAGCCTTGGAC ACCACCCACGCCTTTATAAACACATCCACAAGATTCACCACGAATGGACT GCACCAATCTCAATCATTGGAATCTACAATCACTGGCTAGAACATATCGT TTCCAACATCTTGCCCGTCACTCTCGGCCCCCTGATCATGGGCTCTCATA TGGGGTCGCTGGTGATGTGGACCTGCATTGCGATCACTTCAACACAAATT TCACACGGGGGTTACCATTTACCGTTATTGCCTTCACCCGAAGCACACGA TTATCACCATTTGAAGTgagttaaaagaaaaaattttttttaacaaaaac aacGCCCAAACATAAGTTTTGTATATTTAAAATCTAGTCCCTTACTGTAT TCTTCATCGATATGTCATTTTAGCCAATTACTAAACATGTAGGGATTTTT CCAAGCACCAAGCAATGCCTCCGTTTTTactttcaaattgaatttttaac aaagTCTAACGGGGGCATTTGGGTGCTTGGAAAAAACACTGACATGATAT TTGGTCCTGTCGTGGAGTTTCTTTATGTTAGCTACCCTGCTCTATTTCCT TTTCCATTGTCAGAGATGAATAATATAGGAAGGGTTGGGTTGAATTGCTG ATTTAAGCCTTGGCTAGAAAATTTTATGAACAACCAGGTATTCCGAACTT TCTGTCTCTAATAGTCAATAACAAATGAATAATAACCGCTTGTTGTATCT TGTTCAGTAAAGCAGCATGCTCGAACTTCAATGCAAATAGACagttttct ttttatcttgtccgtaataatttcttttttttaggtTCATCAATAATTTT GGTGTTCTTGGCGTTCTTGACCGTTTGCACGGTACCGACAGTATGTTTGT CAAGTCAAATGCGTACGACCGCCATATCCTCTTACTTGGATTGGAACCGG CAAAAGCGCTTTTCCCTGATGATAAGAAAAAAGGATGcgagaaaaaaacg aattaaaaaatgatataaacTTTTGCGTTTTATACCCtaaaaatccacaa gtaatgttTGGAATATGTtattcaaaaatcaaacaatATATGCATCGTAT ACcgtaaaaattgtattttaagatTGTTATGTTTTATGCGTATAATGTAC ctattatgtttttattttttatctgtaTGTAATATTTCTAAAGCTTTCTT TTATAATcatctctctctaattcgaacctctactattcaaattcaaaaat attgccCCTGAGGGGGCTTAGCTTAAAAGAagtactctctgtaattcgaa tctttcttcaACTCGAAGAAGATTTTcggtcccttgaaaatcgaattaaa aaGAGAGTACTGTACTCATATTTTGGTTGGCTTTATTCTTCATCGATTCT TTCATAAAGCTGTTCTGAAAAGTTAAAGAtggattttttagaaattgtgG GTCACTAGAATCTACTAGAGTTAGAGAAACCAGCTCTAAATGAGAAAACA TTTTGGTGAAAATATCATAATTCAGAGCgagaaattttgtgaaatttaga AGCCCGTTAGAAttacttttctttttggttttcGCAAAAATTCGATACTC TTGCAGAGGTAATTATGGAAACAAACCAAACTTACCGTCCGCATACACCC AGCAGTCAATTTTTCCCGAAACCCCTTATTTACTATTTTTGCAACCTTCG TTTCATATTATCAATGTAGAATGAAATTCTTTTGCTTTTCACGCCTCTTA ACTTTAGCCTAGTACTAGATTGAGTATTTGATATATGCTCACTATGTATG TACTTATCTTTAACTAATAGTTTGCAGAATAAAATAATATGTTTAGTTTT GTTAGCAAAACTAGTTTGAGTTTTTATTGATTAATGCCCCCTACGCCCCC AGCGGAGTTTCCGATCACATCATCACACAAAAAGATTGGACGTCATCATA caaatcttttttcttcatcttgCGCCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000465XLOC_000465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000748-exon-sc0000005-1491911889:1365490..1365695TCONS_00000748-exon-sc0000005-1491911889:1365490..1365695Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1510915933:1365490..1365695TCONS_00000748-exon-sc0000005-1510915933:1365490..1365695Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1575043694:1365490..1365695TCONS_00000748-exon-sc0000005-1575043694:1365490..1365695Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1491911889:1366282..1366554TCONS_00000748-exon-sc0000005-1491911889:1366282..1366554Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1510915933:1366282..1366554TCONS_00000748-exon-sc0000005-1510915933:1366282..1366554Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1575043694:1366282..1366554TCONS_00000748-exon-sc0000005-1575043694:1366282..1366554Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1491911889:1367074..1368218TCONS_00000748-exon-sc0000005-1491911889:1367074..1368218Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1510915933:1367074..1368218TCONS_00000748-exon-sc0000005-1510915933:1367074..1368218Clytia hemisphaericaexon
TCONS_00000748-exon-sc0000005-1575043694:1367074..1368218TCONS_00000748-exon-sc0000005-1575043694:1367074..1368218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1365490..1368218 +
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00000748 vs. Swiss-Prot (Human)
Match: FXDC2 (Fatty acid hydroxylase domain-containing protein 2 OS=Homo sapiens GN=FAXDC2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 5.853e-69
Identity = 113/206 (54.85%), Postives = 143/206 (69.42%), Query Frame = 1
Query:   10 AQMLKAIRVVMFNQLVGLIFSFPIYYFV---AKRGMTYDAEDLPTFQWFLVEMFVYIWVEEFGFYYSHRLGHHPRLYKHIHKIHHEWTAPISIIGIYNHWLEHIVSNILPVTLGPLIMGSHMGSLVMWTCIAITSTQISHGGYHLPLLPSPEAHDYHHLKFINNFGVLGVLDRLHGTDSMFVKSNAYDRHILLLGLEPAKALFPDD 618
             ++ ++IR V+FNQ    + SFP+  F+    K        +LPTF WFL+E+ ++  +EE  FYYSHRL HHP  YK IHK HHEWTAPI +I +Y H +EH VSN+LPV +GPL+MGSH+ S+ MW  +A+  T ISH GYHLP LPSPE HDYHHLKF   +GVLGVLD LHGTD+MF ++ AY+RH+LLLG  P     PD 
Sbjct:  126 VKLRQSIRTVLFNQC---MISFPMVVFLYPFLKWWRDPCRRELPTFHWFLLELAIFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEWTAPIGVISLYAHPIEHAVSNMLPVIVGPLVMGSHLSSITMWFSLALIITTISHCGYHLPFLPSPEFHDYHHLKFNQCYGVLGVLDHLHGTDTMFKQTKAYERHVLLLGFTPLSESIPDS 328          
The following BLAST results are available for this feature:
BLAST of TCONS_00000748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXDC25.853e-6954.85Fatty acid hydroxylase domain-containing protein 2... [more]
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