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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000748 ID=TCONS_00000748|Name=TCONS_00000748|organism=Clytia hemisphaerica|type=transcript|length=1624bp
CCTACACGTGCTCAAATGCTAAAAGCAATCCGAGTTGTCATGTTCAATCA
ATTGGTCGGATTGATTTTCAGTTTTCCAATCTATTATTTTGTCGCAAAAC
GTGGTATGACTTATGATGCTGAAGATTTACCAACTTTCCAATGGTTTTTG
GTTGAaatgtttgtttatatttgggTTGAAGAATTTGGATTCTATTATTC
GCATCGCCTTGGACACCACCCACGCCTTTATAAACACATCCACAAGATTC
ACCACGAATGGACTGCACCAATCTCAATCATTGGAATCTACAATCACTGG
CTAGAACATATCGTTTCCAACATCTTGCCCGTCACTCTCGGCCCCCTGAT
CATGGGCTCTCATATGGGGTCGCTGGTGATGTGGACCTGCATTGCGATCA
CTTCAACACAAATTTCACACGGGGGTTACCATTTACCGTTATTGCCTTCA
CCCGAAGCACACGATTATCACCATTTGAAgtTCATCAATAATTTTGGTGT
TCTTGGCGTTCTTGACCGTTTGCACGGTACCGACAGTATGTTTGTCAAGT
CAAATGCGTACGACCGCCATATCCTCTTACTTGGATTGGAACCGGCAAAA
GCGCTTTTCCCTGATGATAAGAAAAAAGGATGcgagaaaaaaacgaatta
aaaaatgatataaacTTTTGCGTTTTATACCCtaaaaatccacaagtaat
gttTGGAATATGTtattcaaaaatcaaacaatATATGCATCGTATACcgt
aaaaattgtattttaagatTGTTATGTTTTATGCGTATAATGTACctatt
atgtttttattttttatctgtaTGTAATATTTCTAAAGCTTTCTTTTATA
ATcatctctctctaattcgaacctctactattcaaattcaaaaatattgc
cCCTGAGGGGGCTTAGCTTAAAAGAagtactctctgtaattcgaatcttt
cttcaACTCGAAGAAGATTTTcggtcccttgaaaatcgaattaaaaaGAG
AGTACTGTACTCATATTTTGGTTGGCTTTATTCTTCATCGATTCTTTCAT
AAAGCTGTTCTGAAAAGTTAAAGAtggattttttagaaattgtgGGTCAC
TAGAATCTACTAGAGTTAGAGAAACCAGCTCTAAATGAGAAAACATTTTG
GTGAAAATATCATAATTCAGAGCgagaaattttgtgaaatttagaAGCCC
GTTAGAAttacttttctttttggttttcGCAAAAATTCGATACTCTTGCA
GAGGTAATTATGGAAACAAACCAAACTTACCGTCCGCATACACCCAGCAG
TCAATTTTTCCCGAAACCCCTTATTTACTATTTTTGCAACCTTCGTTTCA
TATTATCAATGTAGAATGAAATTCTTTTGCTTTTCACGCCTCTTAACTTT
AGCCTAGTACTAGATTGAGTATTTGATATATGCTCACTATGTATGTACTT
ATCTTTAACTAATAGTTTGCAGAATAAAATAATATGTTTAGTTTTGTTAG
CAAAACTAGTTTGAGTTTTTATTGATTAATGCCCCCTACGCCCCCAGCGG
AGTTTCCGATCACATCATCACACAAAAAGATTGGACGTCATCATAcaaat
cttttttcttcatcttgCGCCGTA Run BLAST on NCBI transcript from alignment at sc0000005:1365490..1368218+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000748 ID=TCONS_00000748|Name=TCONS_00000748|organism=Clytia hemisphaerica|type=transcript|length=2729bp|location=Sequence derived from alignment at sc0000005:1365490..1368218+ (Clytia hemisphaerica)
CCTACACGTGCTCAAATGCTAAAAGCAATCCGAGTTGTCATGTTCAATCA
ATTGGTCGGATTGATTTTCAGTTTTCCAATCTATTATTTTGTCGCAAAAC
GTGGTATGACTTATGATGCTGAAGATTTACCAACTTTCCAATGGTTTTTG
GTTGAaatgtttgtttatatttgggTTGAAGAATTTGGATTCTATTATTC
GCATCGGTGAGTAGTTTTTCGTTTAAGgaggcccccccccagcggtatcc
ctaatcacgccatcacgcaacacgaaaatcgctaaaatttgtcatcacgc
aaaaaatagcgaaaaatagcccaaatcacgcatcacgcctcaaatatttg
ccctatcacgcatcacgcaaaaatcttgatcacgtcatcgcgccaaaaaa
aatctctagtcacgccatcacgcaagaaaaaagttccaatcacgccatca
cgcaaaccgctgggttTAAGAGATGTATCAAGTATGGATAACATTCTCCA
GATGCAAGAAATAAGAACTCGTTGTTATCATTTTAACAAAGCTTGTTGTT
AGATgaaattttaactttattttttttaatctcgCTAAATTCTCTTACCT
TTCTAAAAACTAACATTTACTAACATTTACCCCACTAGTGCTAAATTTAT
GAAGAAATCCCATGGAAATGGCAGTTCTTTTCATCAATTTCCCAAATTAA
AGGCTTGTAAGGCTAGGCACTACATCTTTCTCCTCTCGATTTATGATGGT
TTGAATTTAAGACGAGTTGGACATTCTTACCTTATTTTGTAGCCTTGGAC
ACCACCCACGCCTTTATAAACACATCCACAAGATTCACCACGAATGGACT
GCACCAATCTCAATCATTGGAATCTACAATCACTGGCTAGAACATATCGT
TTCCAACATCTTGCCCGTCACTCTCGGCCCCCTGATCATGGGCTCTCATA
TGGGGTCGCTGGTGATGTGGACCTGCATTGCGATCACTTCAACACAAATT
TCACACGGGGGTTACCATTTACCGTTATTGCCTTCACCCGAAGCACACGA
TTATCACCATTTGAAGTgagttaaaagaaaaaattttttttaacaaaaac
aacGCCCAAACATAAGTTTTGTATATTTAAAATCTAGTCCCTTACTGTAT
TCTTCATCGATATGTCATTTTAGCCAATTACTAAACATGTAGGGATTTTT
CCAAGCACCAAGCAATGCCTCCGTTTTTactttcaaattgaatttttaac
aaagTCTAACGGGGGCATTTGGGTGCTTGGAAAAAACACTGACATGATAT
TTGGTCCTGTCGTGGAGTTTCTTTATGTTAGCTACCCTGCTCTATTTCCT
TTTCCATTGTCAGAGATGAATAATATAGGAAGGGTTGGGTTGAATTGCTG
ATTTAAGCCTTGGCTAGAAAATTTTATGAACAACCAGGTATTCCGAACTT
TCTGTCTCTAATAGTCAATAACAAATGAATAATAACCGCTTGTTGTATCT
TGTTCAGTAAAGCAGCATGCTCGAACTTCAATGCAAATAGACagttttct
ttttatcttgtccgtaataatttcttttttttaggtTCATCAATAATTTT
GGTGTTCTTGGCGTTCTTGACCGTTTGCACGGTACCGACAGTATGTTTGT
CAAGTCAAATGCGTACGACCGCCATATCCTCTTACTTGGATTGGAACCGG
CAAAAGCGCTTTTCCCTGATGATAAGAAAAAAGGATGcgagaaaaaaacg
aattaaaaaatgatataaacTTTTGCGTTTTATACCCtaaaaatccacaa
gtaatgttTGGAATATGTtattcaaaaatcaaacaatATATGCATCGTAT
ACcgtaaaaattgtattttaagatTGTTATGTTTTATGCGTATAATGTAC
ctattatgtttttattttttatctgtaTGTAATATTTCTAAAGCTTTCTT
TTATAATcatctctctctaattcgaacctctactattcaaattcaaaaat
attgccCCTGAGGGGGCTTAGCTTAAAAGAagtactctctgtaattcgaa
tctttcttcaACTCGAAGAAGATTTTcggtcccttgaaaatcgaattaaa
aaGAGAGTACTGTACTCATATTTTGGTTGGCTTTATTCTTCATCGATTCT
TTCATAAAGCTGTTCTGAAAAGTTAAAGAtggattttttagaaattgtgG
GTCACTAGAATCTACTAGAGTTAGAGAAACCAGCTCTAAATGAGAAAACA
TTTTGGTGAAAATATCATAATTCAGAGCgagaaattttgtgaaatttaga
AGCCCGTTAGAAttacttttctttttggttttcGCAAAAATTCGATACTC
TTGCAGAGGTAATTATGGAAACAAACCAAACTTACCGTCCGCATACACCC
AGCAGTCAATTTTTCCCGAAACCCCTTATTTACTATTTTTGCAACCTTCG
TTTCATATTATCAATGTAGAATGAAATTCTTTTGCTTTTCACGCCTCTTA
ACTTTAGCCTAGTACTAGATTGAGTATTTGATATATGCTCACTATGTATG
TACTTATCTTTAACTAATAGTTTGCAGAATAAAATAATATGTTTAGTTTT
GTTAGCAAAACTAGTTTGAGTTTTTATTGATTAATGCCCCCTACGCCCCC
AGCGGAGTTTCCGATCACATCATCACACAAAAAGATTGGACGTCATCATA
caaatcttttttcttcatcttgCGCCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000748-exon-sc0000005-1491911889:1365490..1365695 | TCONS_00000748-exon-sc0000005-1491911889:1365490..1365695 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1510915933:1365490..1365695 | TCONS_00000748-exon-sc0000005-1510915933:1365490..1365695 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1575043694:1365490..1365695 | TCONS_00000748-exon-sc0000005-1575043694:1365490..1365695 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1491911889:1366282..1366554 | TCONS_00000748-exon-sc0000005-1491911889:1366282..1366554 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1510915933:1366282..1366554 | TCONS_00000748-exon-sc0000005-1510915933:1366282..1366554 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1575043694:1366282..1366554 | TCONS_00000748-exon-sc0000005-1575043694:1366282..1366554 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1491911889:1367074..1368218 | TCONS_00000748-exon-sc0000005-1491911889:1367074..1368218 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1510915933:1367074..1368218 | TCONS_00000748-exon-sc0000005-1510915933:1367074..1368218 | Clytia hemisphaerica | exon |
| TCONS_00000748-exon-sc0000005-1575043694:1367074..1368218 | TCONS_00000748-exon-sc0000005-1575043694:1367074..1368218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1365490..1368218 + |
Blast
BLAST of TCONS_00000748 vs. Swiss-Prot (Human)
Match: FXDC2 (Fatty acid hydroxylase domain-containing protein 2 OS=Homo sapiens GN=FAXDC2 PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 5.853e-69 Identity = 113/206 (54.85%), Postives = 143/206 (69.42%), Query Frame = 1
Query: 10 AQMLKAIRVVMFNQLVGLIFSFPIYYFV---AKRGMTYDAEDLPTFQWFLVEMFVYIWVEEFGFYYSHRLGHHPRLYKHIHKIHHEWTAPISIIGIYNHWLEHIVSNILPVTLGPLIMGSHMGSLVMWTCIAITSTQISHGGYHLPLLPSPEAHDYHHLKFINNFGVLGVLDRLHGTDSMFVKSNAYDRHILLLGLEPAKALFPDD 618
++ ++IR V+FNQ + SFP+ F+ K +LPTF WFL+E+ ++ +EE FYYSHRL HHP YK IHK HHEWTAPI +I +Y H +EH VSN+LPV +GPL+MGSH+ S+ MW +A+ T ISH GYHLP LPSPE HDYHHLKF +GVLGVLD LHGTD+MF ++ AY+RH+LLLG P PD
Sbjct: 126 VKLRQSIRTVLFNQC---MISFPMVVFLYPFLKWWRDPCRRELPTFHWFLLELAIFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEWTAPIGVISLYAHPIEHAVSNMLPVIVGPLVMGSHLSSITMWFSLALIITTISHCGYHLPFLPSPEFHDYHHLKFNQCYGVLGVLDHLHGTDTMFKQTKAYERHVLLLGFTPLSESIPDS 328
The following BLAST results are available for this feature:
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