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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000740 ID=TCONS_00000740|Name=TCONS_00000740|organism=Clytia hemisphaerica|type=transcript|length=2070bp
ATTTTACACGTGATAAAAGAAGTTTATAATGACGTTTTACTTGTTTATTT
GTGTGatcagttttcaaaatattttcccctATCAAACAGCagagaaaaca
gctgaaaaaatTCTGAATGTTATATGTTTAAAAGTGAAATGTATATTATG
CAACGGTCACATTCACTATAAATTGATCAGATTTACTTCAGGGACTGTTG
TTAGATTTCTACATAAGTGTAACTATACACAATGAAGTTGGTACTCTTAT
TTAACCTTCTGGTTCTAGGGATCTCCTATGTGACTTGTGGACGGAGCCCT
GTTGTCATTGTCCCAGGAACAGGTGGAAACCAGTTACAAGCGAAACTTAC
AGGGAAACCATCCAAACCAGCATGGTATTGTTATTCCACAACAAGTTCTT
ACTTCACACTGTGGTTGGATATCAAATCTTTGTTGCCCCCAGCTATCAAT
TGTTGGGTTGACAATATGAGACTTGATTGGAACATGAAGGATATGACGGT
CGCCAATTCTCCTGGTGTTTTGACAAGAACTTTCGATTTTGGTCAAACAA
CTTCATTCGAAACAGTCGATACTTTAGGATTGATTAAATATATCAAACCG
TTAGCTGATTACCTTGAAACTCTTGGATATAAACGTGGAAAAGATATTCG
TGGTGCTCCTTATGATTTCAGATACTCCCCAGATCGACAACCAGACCACT
ATCACCTTAAATTGAGGGATCTGATCGAGGAAACCTATGTATCGAATGGG
AATACACCTGTCACTTTGTTATCTCACAGTTATGGATGTGCAATGAGTTT
ATACTTCTTATCCATACAAAGTCAAGCTtggaaatcaaaatatttgaaac
aatgGATTCCAATGTCAGGAGTGTTTGCCGGTACTAAACAGCAAGTCCAA
TTATATGCTGCTGGTCTTTTAATGGGTGTTCCACAAGCTATTGTCAATCC
TTTGACAATCCGTGGTGAACAACGATCTAGTATCTCAAACCTTTACATGC
TTCCTGCTGCTAAATTCTGGTCTAAAAATGACGTGATTGCCAGAACCAAA
AGTAAAACATACTATATTGGTGATATAGATCAGTTCTTGATCGACGTTGG
TTTTCCACAAGGTGCTATCATGCGAAAACATATTGTCAATTCAACAGCTT
TGATGGATTCTATCCCTGGAATACCTATCCAATGTTTCTATGGCGTGATC
AAGAAATCTACCGTGGAGACTCTAGAATATGATGGTGGCTTTCCAGATAA
ATTTGCCAATCTGATAATGGGTGATGGAGATGGAACTGTGAATATCGAAT
CGTTGAGATTGTGTGGTTCCTTCAAATCTAAACAAAATGAGTCAGTAACT
GTCACTGAAGTTCCCAATGTTGACCATACGGCGATCATTAGTGATAAATC
AGTTATGAGTAAGATCGGACAGCTATTACAGGATTGAGATATTTTGATAT
CTTGAAATTAACGTGTATAGAATAGCATTATTTCTAAGAAAAGTTTAAAG
GATAGTTTTTTGAAGGTTTATTTGATGCTTAtaaaccctttaagtgccac
ggtcatttttttctaaattttttaaaggaaatcactagttcaaactttaa
aggcttataagCCTCCGGATCTGGAAGGAGTTAgaccgctgcgcggacct
gcctgaatgatagaaaggtgcccagtggtaaaacttcaaattaattcgct
ggaggacagaatcaagtaaagcaggaCCAAATTTGAAGGTTCTTAGATcg
ctcgttgaccaaaaattgtcaaaaaacggtcaaaatcttaaaaaagtgga
tttttgtcaaattttttgcatttttttgactttttggcttaaaatcttgc
tggaaagactcacttttgatttttgaatttgcttgaccatgaaggacaat
ccaattcctacgagttagaccaaaaatgacgatttctaactcgcCCTCTT
ACATAGCCCAtttctgatatatacgacattggcacttaaagggttaatgt
tgagattgtaatttttttagaatataATTCAGTATCCCAGCTTGTTTGTT
GTTTATATGTCAAAtacaac Run BLAST on NCBI transcript from alignment at sc0000005:1294598..1299191+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000740 ID=TCONS_00000740|Name=TCONS_00000740|organism=Clytia hemisphaerica|type=transcript|length=4594bp|location=Sequence derived from alignment at sc0000005:1294598..1299191+ (Clytia hemisphaerica)
ATTTTACACGTGATAAAAGAAGTTTATAATGACGTTTTACTTGTTTATTT
GTGTGatcagttttcaaaatattttcccctATCAAACAGCagagaaaaca
gctgaaaaaatTCTGAATGTTATATGTTTAAAAGTGAAATGTATATTATG
CAACGGTCACATTCACTATAAATTGATCAGATTTACTTCAGGGACTGTTG
TTAGATTTCTACATAAGTGTAACTATACACAATGAAGTTGGTACTCTTAT
TTAACCTTCTGGTTCTAGGGATCTCCTATGTGACTTGTGGACGGAGCCCT
GTTGTCATTGGTAAGTTTGAAATTGATGATATTTTGATATAAGGCATTTT
TTACGAATCAGTTTAATACTAAAGGTTTTCTTACGTTTTAATCCAATTAC
ATAGAATTTTGGGTATAAAATTCTGTTAGATGATGCACTTGCTATTGATG
CAATGTGATAACGTTTGTGCAAAGTTTTGGAGTCGAAATATCAAATGGTT
TGGGAGTTGTGGCCATATTCTGAagattactttaggcgtacaaacttttg
cgagcagaaacttttgcgaggtcgaaaaatcgcgaaatttacgacattta
ctttcgcgaaactgaggaaaaaatgtttatcGCGTTCGTGAATAGCCctg
ttaaaaattttcaaagacatttactctcgcgaaaatggccaaaattcgcg
aaaatcgttTCTATtcacgaaagtttgtacgcctaaagtagtaaTCAGCA
GAATGGGGAGTCTTTAAATTTAAAAGTGAAATCTTAAATTAATACGAGCC
gtttaaaaaacactatttttaatCTACTTTTAGTCCCAGGAACAGGTGGA
AACCAGTTACAAGCGAAACTTACAGGGAAACCATCCAAACCAGCATGGTA
TTGTTATTCCACAACAAGTTCTTACTTCACACTGTGGTTGGATATCAAAT
CTTTGTTGCCCCCAGCTATCAATTGTTGGGTTGACAATATGAGGTTAGAA
ATtacgcgttttttataagaacaaactatatatgaacataaggtttcgat
ggccaaaatattaagaacaagttcagaatattttaaggctttatatACAG
GCTCTAGAACACCCGATTTCTTCGGAAAATggaaatactcacaaaatggt
gaaaatactAACATGTTATAAGAACATTCGTAGGGCTTGGAACTGAAAAA
GCTAGAACATCCGAAtgcttcaaaacttttggatgttcttacaaaaacgt
TTACATTTGCGGCATTTTTTGATAAGATCTGGTAGCTTACTTAGCGTAAA
ACGAGTTTTCTGAAAGTTGTAACCTGGAAAATTCGTGTTCATTAAGCACA
TTTACTGGGAGTTAGAAATAAGGAGTACTGTTATTTTTTGCCCGGTTCTA
ATCTCCTAGCAGATCCTGATCACTACGCGCTGGATCGTATACTCTCTAAA
TACCATGGCTGTGTAAGATGAGAATCTGCCAACGTTGGCGACACCAAAAG
AAACGTTGAtcataaacataaaaattaaaacccaATCACTTTTGTTCTCA
AGCCAAAGGCAACGcggttttgaatattttggctgaacaaccagCACAGA
TCGCCCATATTCGCCACATCCCTTTAAAGCAGAGTGGTGTCCGCAGAATA
GATTAAAACTTTGAGAtcgcaacgttgtttcaacattcatctaaaACTGA
ATGAACATTAATTTGGCGTTGGTTTGTAGTGAGTAGGTAAATAAGATCAT
CTTCAGACGTTACTGTTCCGtatcgttccgaaacgaaacggttccgaaac
taGTGTGaatgtcaaaattcgaaacgtcaaaaaagaagacgttacaaagt
aaaacagatcgaaactattttcatcggaacggaactgcttcgttttcttg
ctccgaaacgttccaaaACCAATAcatatgaacactctcgatccgtaaca
GAAACCATACCGGAATGATACGAAACcataacgtctgaacatgaCCTAAA
TGTTAACCctggtttattttattttatttctataGACTTGATTGGAACAT
GAAGGATATGACGGTCGCCAATTCTCCTGGTGTTTTGACAAGAACTTTCG
ATTTTGGTCAAACAACTTCATTCGAAACAGTCGATACTTTAGGATTGATT
AAATATATCAAACCGTTAGCTGATTACCTTGAAACTCTTGGATATAAACG
TGGAAAAGATATTCGTGGTGCTCCTTATGATTTCAGATACTCCCCAGGTA
TGTGAAGTTCGTTCCCTAAAGTTTTGCAGAAAGTTTACAAAATCGACgat
gtgaaaaagtgacccttagagaaacttttttttaacttcTCGTTGTTTTT
CTACCCCTTAGAGGGGACTTGGGAAGTTCAAAAACCCTTTACCGTCCGCA
CTTTTACCGAGCCACCTAGGGTATTTTTGCCGAGGTATCCCCAGGGTTTC
CTCTTACAACGATCTTATCCCCTTAAATCCTCTGTGACGATAAAACTCAA
CATACAAGATTTTCTTCTTGAAATCCCAGTATTCCTATTTCCTTGGAAAC
TATTTTATTTGGGCTTAGGTTGGACTTCATTCAAAAGTAGCAGTTATTAA
TTTTATCCATTAAGGACTTTATTGCATCTAATTTGTTGAAAAGTAACCAT
AcgaaaaggttttcttttttctcaggAAAATGTCACTCACGACCATTAAC
ATTTACTCTACCGGAGCAAATTCATAGATTTTTTGATATAGAAATCACTC
CATTTGTCTTTAATTTTATTCTTTCGAATCTTCACTAGATCGACAACCAG
ACCACTATCACCTTAAATTGAGGGATCTGATCGAGGAAACCTATGTATCG
AATGGGAATACACCTGTCACTTTGTTATCTCACAGTTATGGATGTGCAAT
GAGTTTATACTTCTTATCCATACAAAGTCAAGCTtggaaatcaaaatatt
tgaaacaatgGATTCCAATGTCAGGTCAGGATTCGAAGTAACTCGTCAAT
TTTCAGTGTATTTTAACTGTGATTGATACTGTGATAAATTTTTGGACAAC
CTCTTCTCCTCCAATTATACAACATGGGCGGCCACCCCTGAGACATGCCT
TTGCTGCTCCTCACTACCTCACCACCTGCGCAGATTCTAATTTTTTCGTA
AGGGTTGCAAAGTTTAAAATTCCGAACAATGTTACCATCAGAACGGACCC
CTCCTTTCttcattttgatgattttggatttttctCAAACTCTCCCTATA
TTTGGTATATTTACTATTATAGTGGAATATTTTGAGGTAGAATTCTTAAT
CCTTCCATTCATGTCTGATGCTTGTGGGATTTGATCGATCCATGTAGGTA
TGTGTCATTTAACTAATTATCGTTTCACATTTTAATCTTCAGGAGTGTTT
GCCGGTACTAAACAGCAAGTCCAATTATATGCTGCTGGTCTTTTAATGGG
TGTTCCACAAGCTATTGTCAATCCTTTGACAATCCGTGGTGAACAACGAT
CTAGTATCTCAAACCTTTACATGCTTCCTGCTGCTAAATTCTGGTCTAAA
AATGACGTGATTGCCAGAACCAAAAGTAAAACATACTATATTGGTGATAT
AGATCAGTTCTTGATCGACGTTGGTTTTCCACAAGGTGCTATCATGCGAA
AACATATTGTCAATTCAACAGCTTTGATGGATTCTATCCCTGGAATACCT
ATCCAATGTTTCTATGGCGTGATCAAGAAATCTACCGTGGAGACTCTAGA
ATATGATGGTGGCTTTCCAGATAAATTTGCCAATCTGATAATGGGTGATG
GAGATGGAACTGTGAATATCGAATCGTTGAGATTGTGTGGTTCCTTCAAA
TCTAAACAAAATGAGTCAGTAACTGTCACTGAAGTTCCCAATGTTGACCA
TACGGCGATCATTAGTGATAAATCAGTTATGAGTAAGATCGGACAGCTAT
TACAGGATTGAGATATTTTGATATCTTGAAATTAACGTGTATAGAATAGC
ATTATTTCTAAGAAAAGTTTAAAGGATAGTTTTTTGAAGGTTTATTTGAT
GCTTAtaaaccctttaagtgccacggtcatttttttctaaattttttaaa
ggaaatcactagttcaaactttaaaggcttataagCCTCCGGATCTGGAA
GGAGTTAgaccgctgcgcggacctgcctgaatgatagaaaggtgcccagt
ggtaaaacttcaaattaattcgctggaggacagaatcaagtaaagcagga
CCAAATTTGAAGGTTCTTAGATcgctcgttgaccaaaaattgtcaaaaaa
cggtcaaaatcttaaaaaagtggatttttgtcaaattttttgcatttttt
tgactttttggcttaaaatcttgctggaaagactcacttttgatttttga
atttgcttgaccatgaaggacaatccaattcctacgagttagaccaaaaa
tgacgatttctaactcgcCCTCTTACATAGCCCAtttctgatatatacga
cattggcacttaaagggttaatgttgagattgtaatttttttagaatata
ATTCAGTATCCCAGCTTGTTTGTTGTTTATATGTCAAAtacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000740-exon-sc0000005-1491911889:1294598..1294907 | TCONS_00000740-exon-sc0000005-1491911889:1294598..1294907 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1510915933:1294598..1294907 | TCONS_00000740-exon-sc0000005-1510915933:1294598..1294907 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1575043694:1294598..1294907 | TCONS_00000740-exon-sc0000005-1575043694:1294598..1294907 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1491911889:1295431..1295590 | TCONS_00000740-exon-sc0000005-1491911889:1295431..1295590 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1510915933:1295431..1295590 | TCONS_00000740-exon-sc0000005-1510915933:1295431..1295590 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1575043694:1295431..1295590 | TCONS_00000740-exon-sc0000005-1575043694:1295431..1295590 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1491911889:1296633..1296844 | TCONS_00000740-exon-sc0000005-1491911889:1296633..1296844 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1510915933:1296633..1296844 | TCONS_00000740-exon-sc0000005-1510915933:1296633..1296844 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1575043694:1296633..1296844 | TCONS_00000740-exon-sc0000005-1575043694:1296633..1296844 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1491911889:1297386..1297571 | TCONS_00000740-exon-sc0000005-1491911889:1297386..1297571 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1510915933:1297386..1297571 | TCONS_00000740-exon-sc0000005-1510915933:1297386..1297571 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1575043694:1297386..1297571 | TCONS_00000740-exon-sc0000005-1575043694:1297386..1297571 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1491911889:1297990..1299191 | TCONS_00000740-exon-sc0000005-1491911889:1297990..1299191 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1510915933:1297990..1299191 | TCONS_00000740-exon-sc0000005-1510915933:1297990..1299191 | Clytia hemisphaerica | exon |
| TCONS_00000740-exon-sc0000005-1575043694:1297990..1299191 | TCONS_00000740-exon-sc0000005-1575043694:1297990..1299191 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1294598..1299191 + |
Blast
BLAST of TCONS_00000740 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2) HSP 1 Score: 253.447 bits (646), Expect = 3.716e-76 Identity = 139/381 (36.48%), Postives = 223/381 (58.53%), Query Frame = 1
Query: 298 PVVIVPGTGGNQLQAKLTGKPSKPAWYCYSTTSSYFTLWLDIKSLLPPAINCWVDNMRLDWNMKDMTVANSPGVLTRTFDFGQTTSFETVD--TLGLIKYIKPLADYLETLGYKRGKDIRGAPYDFRYSPDRQPDHYHLKLRDLIEETYVSNGNTPVTLLSHSYGCAMSLYFLSIQSQAWKSKYLKQWIPMSGVFAGTKQQVQLYAAGLLMGVPQAIVNPLTIRGEQRSSISNLYMLPAAKFWSKNDVIARTKSKTYYIGDIDQFLIDVGFPQGAIMRKHIVNSTALMDSI--PGIPIQCFYGVIKKSTVETLEYDGGFPDKFANLIMGDGDGTVNIESLRLCGSFKSKQNESVTVTEVPNVDHTAIISDKSVMSKIGQLL 1428
PVV+VPG GNQL+AKL KP+ + C T SYFT+WL+++ LLP I+CW+DN+RL +N GV R FG+T S E +D + Y + + L GY RG+D+RGAPYD+R +P+ Y L LR++IEE Y G PV L++HS G +LYFL Q QAWK KY++ ++ + + G + +++ A+G +P ++ PL IR +QRS++S ++LP WS V +T + Y + D +F D+GF G +MR+ ++ L+++ PG+ + C YG T ++ Y+ FPD+ + GDGDGTVN++S C +++S+Q V + E+P +H ++++ + ++ + ++L
Sbjct: 39 PVVLVPGDLGNQLEAKLD-KPTVVHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNEN-GPYFLALREMIEEMYQLYGG-PVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIP--VIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQ---DTEGLVEATMPPGVQLHCLYGT-GVPTPDSFYYE-SFPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVL 409
The following BLAST results are available for this feature:
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