TCONS_00000740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000740
Unique NameTCONS_00000740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2070

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000740 ID=TCONS_00000740|Name=TCONS_00000740|organism=Clytia hemisphaerica|type=transcript|length=2070bp
ATTTTACACGTGATAAAAGAAGTTTATAATGACGTTTTACTTGTTTATTT
GTGTGatcagttttcaaaatattttcccctATCAAACAGCagagaaaaca
gctgaaaaaatTCTGAATGTTATATGTTTAAAAGTGAAATGTATATTATG
CAACGGTCACATTCACTATAAATTGATCAGATTTACTTCAGGGACTGTTG
TTAGATTTCTACATAAGTGTAACTATACACAATGAAGTTGGTACTCTTAT
TTAACCTTCTGGTTCTAGGGATCTCCTATGTGACTTGTGGACGGAGCCCT
GTTGTCATTGTCCCAGGAACAGGTGGAAACCAGTTACAAGCGAAACTTAC
AGGGAAACCATCCAAACCAGCATGGTATTGTTATTCCACAACAAGTTCTT
ACTTCACACTGTGGTTGGATATCAAATCTTTGTTGCCCCCAGCTATCAAT
TGTTGGGTTGACAATATGAGACTTGATTGGAACATGAAGGATATGACGGT
CGCCAATTCTCCTGGTGTTTTGACAAGAACTTTCGATTTTGGTCAAACAA
CTTCATTCGAAACAGTCGATACTTTAGGATTGATTAAATATATCAAACCG
TTAGCTGATTACCTTGAAACTCTTGGATATAAACGTGGAAAAGATATTCG
TGGTGCTCCTTATGATTTCAGATACTCCCCAGATCGACAACCAGACCACT
ATCACCTTAAATTGAGGGATCTGATCGAGGAAACCTATGTATCGAATGGG
AATACACCTGTCACTTTGTTATCTCACAGTTATGGATGTGCAATGAGTTT
ATACTTCTTATCCATACAAAGTCAAGCTtggaaatcaaaatatttgaaac
aatgGATTCCAATGTCAGGAGTGTTTGCCGGTACTAAACAGCAAGTCCAA
TTATATGCTGCTGGTCTTTTAATGGGTGTTCCACAAGCTATTGTCAATCC
TTTGACAATCCGTGGTGAACAACGATCTAGTATCTCAAACCTTTACATGC
TTCCTGCTGCTAAATTCTGGTCTAAAAATGACGTGATTGCCAGAACCAAA
AGTAAAACATACTATATTGGTGATATAGATCAGTTCTTGATCGACGTTGG
TTTTCCACAAGGTGCTATCATGCGAAAACATATTGTCAATTCAACAGCTT
TGATGGATTCTATCCCTGGAATACCTATCCAATGTTTCTATGGCGTGATC
AAGAAATCTACCGTGGAGACTCTAGAATATGATGGTGGCTTTCCAGATAA
ATTTGCCAATCTGATAATGGGTGATGGAGATGGAACTGTGAATATCGAAT
CGTTGAGATTGTGTGGTTCCTTCAAATCTAAACAAAATGAGTCAGTAACT
GTCACTGAAGTTCCCAATGTTGACCATACGGCGATCATTAGTGATAAATC
AGTTATGAGTAAGATCGGACAGCTATTACAGGATTGAGATATTTTGATAT
CTTGAAATTAACGTGTATAGAATAGCATTATTTCTAAGAAAAGTTTAAAG
GATAGTTTTTTGAAGGTTTATTTGATGCTTAtaaaccctttaagtgccac
ggtcatttttttctaaattttttaaaggaaatcactagttcaaactttaa
aggcttataagCCTCCGGATCTGGAAGGAGTTAgaccgctgcgcggacct
gcctgaatgatagaaaggtgcccagtggtaaaacttcaaattaattcgct
ggaggacagaatcaagtaaagcaggaCCAAATTTGAAGGTTCTTAGATcg
ctcgttgaccaaaaattgtcaaaaaacggtcaaaatcttaaaaaagtgga
tttttgtcaaattttttgcatttttttgactttttggcttaaaatcttgc
tggaaagactcacttttgatttttgaatttgcttgaccatgaaggacaat
ccaattcctacgagttagaccaaaaatgacgatttctaactcgcCCTCTT
ACATAGCCCAtttctgatatatacgacattggcacttaaagggttaatgt
tgagattgtaatttttttagaatataATTCAGTATCCCAGCTTGTTTGTT
GTTTATATGTCAAAtacaac
Run BLAST on NCBI

transcript from alignment at sc0000005:1294598..1299191+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000740 ID=TCONS_00000740|Name=TCONS_00000740|organism=Clytia hemisphaerica|type=transcript|length=4594bp|location=Sequence derived from alignment at sc0000005:1294598..1299191+ (Clytia hemisphaerica)
ATTTTACACGTGATAAAAGAAGTTTATAATGACGTTTTACTTGTTTATTT
GTGTGatcagttttcaaaatattttcccctATCAAACAGCagagaaaaca
gctgaaaaaatTCTGAATGTTATATGTTTAAAAGTGAAATGTATATTATG
CAACGGTCACATTCACTATAAATTGATCAGATTTACTTCAGGGACTGTTG
TTAGATTTCTACATAAGTGTAACTATACACAATGAAGTTGGTACTCTTAT
TTAACCTTCTGGTTCTAGGGATCTCCTATGTGACTTGTGGACGGAGCCCT
GTTGTCATTGGTAAGTTTGAAATTGATGATATTTTGATATAAGGCATTTT
TTACGAATCAGTTTAATACTAAAGGTTTTCTTACGTTTTAATCCAATTAC
ATAGAATTTTGGGTATAAAATTCTGTTAGATGATGCACTTGCTATTGATG
CAATGTGATAACGTTTGTGCAAAGTTTTGGAGTCGAAATATCAAATGGTT
TGGGAGTTGTGGCCATATTCTGAagattactttaggcgtacaaacttttg
cgagcagaaacttttgcgaggtcgaaaaatcgcgaaatttacgacattta
ctttcgcgaaactgaggaaaaaatgtttatcGCGTTCGTGAATAGCCctg
ttaaaaattttcaaagacatttactctcgcgaaaatggccaaaattcgcg
aaaatcgttTCTATtcacgaaagtttgtacgcctaaagtagtaaTCAGCA
GAATGGGGAGTCTTTAAATTTAAAAGTGAAATCTTAAATTAATACGAGCC
gtttaaaaaacactatttttaatCTACTTTTAGTCCCAGGAACAGGTGGA
AACCAGTTACAAGCGAAACTTACAGGGAAACCATCCAAACCAGCATGGTA
TTGTTATTCCACAACAAGTTCTTACTTCACACTGTGGTTGGATATCAAAT
CTTTGTTGCCCCCAGCTATCAATTGTTGGGTTGACAATATGAGGTTAGAA
ATtacgcgttttttataagaacaaactatatatgaacataaggtttcgat
ggccaaaatattaagaacaagttcagaatattttaaggctttatatACAG
GCTCTAGAACACCCGATTTCTTCGGAAAATggaaatactcacaaaatggt
gaaaatactAACATGTTATAAGAACATTCGTAGGGCTTGGAACTGAAAAA
GCTAGAACATCCGAAtgcttcaaaacttttggatgttcttacaaaaacgt
TTACATTTGCGGCATTTTTTGATAAGATCTGGTAGCTTACTTAGCGTAAA
ACGAGTTTTCTGAAAGTTGTAACCTGGAAAATTCGTGTTCATTAAGCACA
TTTACTGGGAGTTAGAAATAAGGAGTACTGTTATTTTTTGCCCGGTTCTA
ATCTCCTAGCAGATCCTGATCACTACGCGCTGGATCGTATACTCTCTAAA
TACCATGGCTGTGTAAGATGAGAATCTGCCAACGTTGGCGACACCAAAAG
AAACGTTGAtcataaacataaaaattaaaacccaATCACTTTTGTTCTCA
AGCCAAAGGCAACGcggttttgaatattttggctgaacaaccagCACAGA
TCGCCCATATTCGCCACATCCCTTTAAAGCAGAGTGGTGTCCGCAGAATA
GATTAAAACTTTGAGAtcgcaacgttgtttcaacattcatctaaaACTGA
ATGAACATTAATTTGGCGTTGGTTTGTAGTGAGTAGGTAAATAAGATCAT
CTTCAGACGTTACTGTTCCGtatcgttccgaaacgaaacggttccgaaac
taGTGTGaatgtcaaaattcgaaacgtcaaaaaagaagacgttacaaagt
aaaacagatcgaaactattttcatcggaacggaactgcttcgttttcttg
ctccgaaacgttccaaaACCAATAcatatgaacactctcgatccgtaaca
GAAACCATACCGGAATGATACGAAACcataacgtctgaacatgaCCTAAA
TGTTAACCctggtttattttattttatttctataGACTTGATTGGAACAT
GAAGGATATGACGGTCGCCAATTCTCCTGGTGTTTTGACAAGAACTTTCG
ATTTTGGTCAAACAACTTCATTCGAAACAGTCGATACTTTAGGATTGATT
AAATATATCAAACCGTTAGCTGATTACCTTGAAACTCTTGGATATAAACG
TGGAAAAGATATTCGTGGTGCTCCTTATGATTTCAGATACTCCCCAGGTA
TGTGAAGTTCGTTCCCTAAAGTTTTGCAGAAAGTTTACAAAATCGACgat
gtgaaaaagtgacccttagagaaacttttttttaacttcTCGTTGTTTTT
CTACCCCTTAGAGGGGACTTGGGAAGTTCAAAAACCCTTTACCGTCCGCA
CTTTTACCGAGCCACCTAGGGTATTTTTGCCGAGGTATCCCCAGGGTTTC
CTCTTACAACGATCTTATCCCCTTAAATCCTCTGTGACGATAAAACTCAA
CATACAAGATTTTCTTCTTGAAATCCCAGTATTCCTATTTCCTTGGAAAC
TATTTTATTTGGGCTTAGGTTGGACTTCATTCAAAAGTAGCAGTTATTAA
TTTTATCCATTAAGGACTTTATTGCATCTAATTTGTTGAAAAGTAACCAT
AcgaaaaggttttcttttttctcaggAAAATGTCACTCACGACCATTAAC
ATTTACTCTACCGGAGCAAATTCATAGATTTTTTGATATAGAAATCACTC
CATTTGTCTTTAATTTTATTCTTTCGAATCTTCACTAGATCGACAACCAG
ACCACTATCACCTTAAATTGAGGGATCTGATCGAGGAAACCTATGTATCG
AATGGGAATACACCTGTCACTTTGTTATCTCACAGTTATGGATGTGCAAT
GAGTTTATACTTCTTATCCATACAAAGTCAAGCTtggaaatcaaaatatt
tgaaacaatgGATTCCAATGTCAGGTCAGGATTCGAAGTAACTCGTCAAT
TTTCAGTGTATTTTAACTGTGATTGATACTGTGATAAATTTTTGGACAAC
CTCTTCTCCTCCAATTATACAACATGGGCGGCCACCCCTGAGACATGCCT
TTGCTGCTCCTCACTACCTCACCACCTGCGCAGATTCTAATTTTTTCGTA
AGGGTTGCAAAGTTTAAAATTCCGAACAATGTTACCATCAGAACGGACCC
CTCCTTTCttcattttgatgattttggatttttctCAAACTCTCCCTATA
TTTGGTATATTTACTATTATAGTGGAATATTTTGAGGTAGAATTCTTAAT
CCTTCCATTCATGTCTGATGCTTGTGGGATTTGATCGATCCATGTAGGTA
TGTGTCATTTAACTAATTATCGTTTCACATTTTAATCTTCAGGAGTGTTT
GCCGGTACTAAACAGCAAGTCCAATTATATGCTGCTGGTCTTTTAATGGG
TGTTCCACAAGCTATTGTCAATCCTTTGACAATCCGTGGTGAACAACGAT
CTAGTATCTCAAACCTTTACATGCTTCCTGCTGCTAAATTCTGGTCTAAA
AATGACGTGATTGCCAGAACCAAAAGTAAAACATACTATATTGGTGATAT
AGATCAGTTCTTGATCGACGTTGGTTTTCCACAAGGTGCTATCATGCGAA
AACATATTGTCAATTCAACAGCTTTGATGGATTCTATCCCTGGAATACCT
ATCCAATGTTTCTATGGCGTGATCAAGAAATCTACCGTGGAGACTCTAGA
ATATGATGGTGGCTTTCCAGATAAATTTGCCAATCTGATAATGGGTGATG
GAGATGGAACTGTGAATATCGAATCGTTGAGATTGTGTGGTTCCTTCAAA
TCTAAACAAAATGAGTCAGTAACTGTCACTGAAGTTCCCAATGTTGACCA
TACGGCGATCATTAGTGATAAATCAGTTATGAGTAAGATCGGACAGCTAT
TACAGGATTGAGATATTTTGATATCTTGAAATTAACGTGTATAGAATAGC
ATTATTTCTAAGAAAAGTTTAAAGGATAGTTTTTTGAAGGTTTATTTGAT
GCTTAtaaaccctttaagtgccacggtcatttttttctaaattttttaaa
ggaaatcactagttcaaactttaaaggcttataagCCTCCGGATCTGGAA
GGAGTTAgaccgctgcgcggacctgcctgaatgatagaaaggtgcccagt
ggtaaaacttcaaattaattcgctggaggacagaatcaagtaaagcagga
CCAAATTTGAAGGTTCTTAGATcgctcgttgaccaaaaattgtcaaaaaa
cggtcaaaatcttaaaaaagtggatttttgtcaaattttttgcatttttt
tgactttttggcttaaaatcttgctggaaagactcacttttgatttttga
atttgcttgaccatgaaggacaatccaattcctacgagttagaccaaaaa
tgacgatttctaactcgcCCTCTTACATAGCCCAtttctgatatatacga
cattggcacttaaagggttaatgttgagattgtaatttttttagaatata
ATTCAGTATCCCAGCTTGTTTGTTGTTTATATGTCAAAtacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000462XLOC_000462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000740-exon-sc0000005-1491911889:1294598..1294907TCONS_00000740-exon-sc0000005-1491911889:1294598..1294907Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1510915933:1294598..1294907TCONS_00000740-exon-sc0000005-1510915933:1294598..1294907Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1575043694:1294598..1294907TCONS_00000740-exon-sc0000005-1575043694:1294598..1294907Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1491911889:1295431..1295590TCONS_00000740-exon-sc0000005-1491911889:1295431..1295590Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1510915933:1295431..1295590TCONS_00000740-exon-sc0000005-1510915933:1295431..1295590Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1575043694:1295431..1295590TCONS_00000740-exon-sc0000005-1575043694:1295431..1295590Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1491911889:1296633..1296844TCONS_00000740-exon-sc0000005-1491911889:1296633..1296844Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1510915933:1296633..1296844TCONS_00000740-exon-sc0000005-1510915933:1296633..1296844Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1575043694:1296633..1296844TCONS_00000740-exon-sc0000005-1575043694:1296633..1296844Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1491911889:1297386..1297571TCONS_00000740-exon-sc0000005-1491911889:1297386..1297571Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1510915933:1297386..1297571TCONS_00000740-exon-sc0000005-1510915933:1297386..1297571Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1575043694:1297386..1297571TCONS_00000740-exon-sc0000005-1575043694:1297386..1297571Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1491911889:1297990..1299191TCONS_00000740-exon-sc0000005-1491911889:1297990..1299191Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1510915933:1297990..1299191TCONS_00000740-exon-sc0000005-1510915933:1297990..1299191Clytia hemisphaericaexon
TCONS_00000740-exon-sc0000005-1575043694:1297990..1299191TCONS_00000740-exon-sc0000005-1575043694:1297990..1299191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1294598..1299191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272431	0.357958	0.296019	0	0.950902	0.240129	3.6847	3.73622	3.75502	2.90316	6.80318	7.23332	20.6608	19.8304	6.02294	19.1091	1.44611	11.981	15.2912	12.049	24.5139	23.3644	17.0304	23.3551	17.4217	15.954	2.15748	3.71366	43.3001	42.2393
Blast
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BLAST of TCONS_00000740 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 3.716e-76
Identity = 139/381 (36.48%), Postives = 223/381 (58.53%), Query Frame = 1 
Query:  298 PVVIVPGTGGNQLQAKLTGKPSKPAWYCYSTTSSYFTLWLDIKSLLPPAINCWVDNMRLDWNMKDMTVANSPGVLTRTFDFGQTTSFETVD--TLGLIKYIKPLADYLETLGYKRGKDIRGAPYDFRYSPDRQPDHYHLKLRDLIEETYVSNGNTPVTLLSHSYGCAMSLYFLSIQSQAWKSKYLKQWIPMSGVFAGTKQQVQLYAAGLLMGVPQAIVNPLTIRGEQRSSISNLYMLPAAKFWSKNDVIARTKSKTYYIGDIDQFLIDVGFPQGAIMRKHIVNSTALMDSI--PGIPIQCFYGVIKKSTVETLEYDGGFPDKFANLIMGDGDGTVNIESLRLCGSFKSKQNESVTVTEVPNVDHTAIISDKSVMSKIGQLL 1428
            PVV+VPG  GNQL+AKL  KP+   + C   T SYFT+WL+++ LLP  I+CW+DN+RL +N          GV  R   FG+T S E +D     +  Y   + + L   GY RG+D+RGAPYD+R +P+     Y L LR++IEE Y   G  PV L++HS G   +LYFL  Q QAWK KY++ ++ +   + G  + +++ A+G    +P  ++ PL IR +QRS++S  ++LP    WS   V  +T +  Y + D  +F  D+GF  G +MR+   ++  L+++   PG+ + C YG     T ++  Y+  FPD+   +  GDGDGTVN++S   C +++S+Q   V + E+P  +H  ++++ + ++ + ++L
Sbjct:   39 PVVLVPGDLGNQLEAKLD-KPTVVHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNEN-GPYFLALREMIEEMYQLYGG-PVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIP--VIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQ---DTEGLVEATMPPGVQLHCLYGT-GVPTPDSFYYE-SFPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVL 409
The following BLAST results are available for this feature:
BLAST of TCONS_00000740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAG153.716e-7636.48Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G... [more]
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