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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000724 ID=TCONS_00000724|Name=TCONS_00000724|organism=Clytia hemisphaerica|type=transcript|length=2234bpRun BLAST on NCBI transcript from alignment at sc0000005:936019..959262+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000724 ID=TCONS_00000724|Name=TCONS_00000724|organism=Clytia hemisphaerica|type=transcript|length=23244bp|location=Sequence derived from alignment at sc0000005:936019..959262+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000724 vs. Swiss-Prot (Human)
Match: STK33 (Serine/threonine-protein kinase 33 OS=Homo sapiens GN=STK33 PE=1 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 3.992e-103 Identity = 158/304 (51.97%), Postives = 222/304 (73.03%), Query Frame = 2
Query: 179 QVKHTRLDDDVDFEQHFDYGILLGKGSFGTVNEAIRIDSGEKFAVKVINKEKAGSAAVKLLEREVAIMKKVDHPNIIFLEEVLETQTKMYLVMELCSHGGLEEMLNERKYFLEQDVLVIMQQLADAIAYIHENDIVHRDLKLDNIL----LAEPTDELPFNVKLTDFGLSYTRGGSGSDYMMNQVVGTPIYMAPEVITNYGYSQQCDIWSLGVILFKLITGNPPFMSFSEEDLFDLIKKGELQFSHENWKNVSPAAKELVEGLMKVDPAHRLTSKEIVSHPWIKGEQEMNGTKTINVLEMMKEY 1078
+V H R+++ E+ + +G +LGKGSFG V EA ++ K+A+K +NKEKAGS+AVKLLEREV I+K V H +II LE+V ET KMYLVMELC G L+E+L+ + +F E + I+Q LA AIAY+H NDIVHRDLKL+NI+ L + +E+ N+K+TDFGL+ + S S+ M+ GTPIYMAPEVI+ + YSQQCDIWS+GV+++ L+ G PPF++ SEE LF+LI+KGEL F + W ++S AK +++ LMKVDPAHR+T+KE++ + W+ G + ++ + NVLEMMKE+
Sbjct: 100 KVPHIRIENGAAIEEIYTFGRILGKGSFGIVIEATDKETETKWAIKKVNKEKAGSSAVKLLEREVNILKSVKHEHIIHLEQVFETPKKMYLVMELCEDGELKEILDRKGHFSENETRWIIQSLASAIAYLHNNDIVHRDLKLENIMVKSSLIDDNNEINLNIKVTDFGLA-VKKQSRSEAMLQATCGTPIYMAPEVISAHDYSQQCDIWSIGVVMYMLLRGEPPFLASSEEKLFELIRKGELHFENAVWNSISDCAKSVLKQLMKVDPAHRITAKELLDNQWLTGNK-LSSVRPTNVLEMMKEW 401 The following BLAST results are available for this feature:
BLAST of TCONS_00000724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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