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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000722 ID=TCONS_00000722|Name=TCONS_00000722|organism=Clytia hemisphaerica|type=transcript|length=1788bpRun BLAST on NCBI protein sequence of TCONS_00000722-protein >TCONS_00000722-protein ID=TCONS_00000722-protein|Name=TCONS_00000722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp LDIQPCVGVYKITPSEVNSRPAACLTMFLLQGRTVMLEQPRKSGAKILTHRun BLAST on NCBI transcript from alignment at sc0000005:916872..933834+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000722 ID=TCONS_00000722|Name=TCONS_00000722|organism=Clytia hemisphaerica|type=transcript|length=16963bp|location=Sequence derived from alignment at sc0000005:916872..933834+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:916872..933834+ >TCONS_00000722 ID=TCONS_00000722|Name=TCONS_00000722|organism=Clytia hemisphaerica|type=CDS|length=14184bp|location=Sequence derived from alignment at sc0000005:916872..933834+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000722 vs. Swiss-Prot (Human)
Match: INT13 (Integrator complex subunit 13 OS=Homo sapiens GN=INTS13 PE=1 SV=2) HSP 1 Score: 266.544 bits (680), Expect = 5.371e-79 Identity = 159/383 (41.51%), Postives = 226/383 (59.01%), Query Frame = 1
Query: 1 LDIQPCVGVYKITPSEVNSRPAACLTMFLLQGRTVMLEQPRKSGAKILTHMLNSHGGDIYIHVLAAGRSSLEDPPSITEGVGGRVTDYRVNDFGRLMKENRLAPFTD---IPDG--QTPNKTASSRLERYTKHWPMVICDTLIFNMQQNXXXXXXXXXXXXXXXXDVQECKKVVYKLQAMEARNDSLPLPVVTLNGKNSKKEDQYKHVWTELDVYVEGASKTSPMHKKVLDCLRGTQXXXXXXXXXXXXXXXXXAVPSTDKNRAEAPSERKAKEVPSDPXXXXXXXXXXXXXNQKDSSQAAPITPKKSPRHDEPASKLRKTGSRSALNTITPVVKAKS--SLLSIWTNHLNLTASRYHEEFFGRKVSGNRKFDLYAADADPTG 1128
+++ C G Y+I+P +VNSRP++CLT FLL GR+V+LEQPRKSG+K+++HML+SHGG+I++HVL++ RS LEDPPSI+EG GGRVTDYR+ DFG M+ENRL PF D DG + P + A +LE++T++WPM+I T IFNMQ + PL S+++K SL+EEDV C+K +Y L ME +ND LP+ V GK K+++QY+ +W EL+ V S H++VL+CL + P K + E SE+ K+ + + K+ A I K SP EP +K ++ V K+K SLLS+W+N +N SR H+EF GR S N + +LY + G
Sbjct: 326 IELHYCTGAYRISPVDVNSRPSSCLTNFLLNGRSVLLEQPRKSGSKVISHMLSSHGGEIFLHVLSSSRSILEDPPSISEGCGGRVTDYRITDFGEFMRENRLTPFLDPRYKIDGSLEVPLERAKDQLEKHTRYWPMIISQTTIFNMQA-VVPLASVIVKESLTEEDVLNCQKTIYNLVDMERKNDPLPISTVGTRGKGPKRDEQYRIMWNELETLVRAHINNSEKHQRVLECLMACRSKPPEEEERKKR--------GRKREDKEDKSEKAVKDYEQEKSWQDSERLKGILERGKEELAEAEII-KDSPDSPEPPNK----KPLVEMDETPQVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRAELYQHLKEENG 694 The following BLAST results are available for this feature:
BLAST of TCONS_00000722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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