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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000717 ID=TCONS_00000717|Name=TCONS_00000717|organism=Clytia hemisphaerica|type=transcript|length=1426bp ATCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTCAT ATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCAAC GCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTGCC AGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCTGT TGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaattaaa ttttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTTTG AAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAGCT GACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATACAT ACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGTCA AGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTTCA AATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTGAG TATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTTTG TATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAAGA GATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCTCT TGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAGAA TCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTTTC CAAGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATGGT TGGCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGATG AGAGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCAGT GCCATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGCCTTCAT CACAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTGCTCAGC TGGGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATCGGAAAA CATGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGAAATGAT ATCTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTCAATTGA GAAAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTACAG CAATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTATAC TGTTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATCTATTCG TCAAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACAGTTACG GTATAGATACTGTAAGAGTCCCCTGG Run BLAST on NCBI protein sequence of TCONS_00000717-protein >TCONS_00000717-protein ID=TCONS_00000717-protein|Name=TCONS_00000717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
HGKFNGYFNSNHISFHMRAVTALYAPFVTLVPTPNLTNAKTECGVAHCCQ IPSKNHNGTIKWKTSCCSGFTVDVFEMVQRKLNFEYTLYIVEDGKWGTFE NGSWNGMIGDLVNNKADFIINIMTPLEQRAQYIHFTNHFMESDFGIARVK EMTKDISSYIFKQLISNPLKRALLVSLIVALLSISLFENLNAKCTSNPFV FLQDTMAYVFGLTFQRDMGGTNPRMWSGRLAALGYASAMTIIMSIYTARI TANSIEQVVLDDFKGFQDDKFQNPTENYKFTMVGNQGWAIESYFREHPDE SYRRMYKFMSKYFVSSAMEGVQKLLDGSIQAFITDSGSFPVELHKIVAQL GCPKEIELLENTYIGKHGLSFAYRKNFTYGEMISNALLGLYETDNLIQLR KKWFPSSHCKGKTPVQQFDWTYFSSILVLVGYTVIIGIFVNLIEHVYLFV KKQWKKSQNDEKVTVTV Run BLAST on NCBI transcript from alignment at sc0000005:875474..877837+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000717 ID=TCONS_00000717|Name=TCONS_00000717|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at sc0000005:875474..877837+ (Clytia hemisphaerica) ATCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTCAT
ATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCAAC
GCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTGCC
AGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCTGT
TGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaattaaa
ttttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTTTG
AAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAGCT
GACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATACAT
ACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGTCA
AGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTTCA
AATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTGAG
TATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTTTG
TATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAAGA
GATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCTCT
TGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAGAA
TCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTTTC
CAAGATGATAAGGTATTTAGTTTGCTTAACCCATAATCTTTGAGCAATTC
TACACTGACACTCAATCTAAAGGCCAGTTCCGTAAGAGAGGCTACCCAGG
CTGGCAAACCACTTTGAtcttttttcatccagattATTGATGAATATAAA
ACCGGTTAAAAGTAAAACAATCATCCCAGAGGCAGAATTTAACCAGGTCA
TTACTTTCGCCACATCTCTTATGAGTCGAACGTGGTGTGTGCAGAGTGGA
TAATGCTCTGTTGTGATTAGGTTACCTCTGCCTTATTAAATCATATTGAA
GCAATAATATAAACACCCCTGTCCCtgaatttgatttgaaaagaaaagaa
cacccctgtctcgcagcccccggtggaacttctttTTACAATTGGGATGA
aattttctatcgaaatcccaatggggatagaaattctatttttcccATTA
AGTTCTGAATAGGGATAAACGTAAATTCAAATTTCCGGAAGGGCTGAAAT
TTTAAGCTATTTTCCCACCTGGGACGAAATTCTTACCAAATTTGGTCCAA
CCGCTATAGCATATTTAATTATTACTCGCATCGTAAGATTATCAAAAGAG
AATACACTTGGACAATAGGATTCCTAAATTGTTACACTTATAATTATTGG
ATCCAAATCTCTATATTACTTTTCATGTTAGCTTTAATTAAACTTTCACT
ACTTTTAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATGGTTGGC
AATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGATGAGAG
CTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCAGTGCCA
TGGAAGGTGTTCAAAAATTGCTAGATGGGTAAGTGCACCTGAAATTGAGA
AAATAAACTGTGAAGCTTGCATTGTCTTGATGTCTGTATTAGAAAACATA
TTTGTGTTATTGTaactcaattttcttttcacTGCTGCAATTTTGTGGAA
AagtatatttcatattttaccgctCCGGAAAAGATTTGTTAAGTTACATT
TTAGATTCTTACAATCTTAGCAATCTTAATGAAGGGCTAATTGAATGATT
CGACGAATTTGTTTTACTAGATCAATTCAAGCCTTCATCACAGACAGTGG
CTCATTTCCAGTCGAATTACATAAAATTGTTGCTCAGCTGGGATGCCCAA
AAGAAATCGAGTTATTGGAAAATACGTATATCGGAAAACATGGATTGTCA
TTCGCTTATCGTAAGAATTTCACTTATGGAGAAATGATATCTAATGCTTT
ATTAGGTCTTTACGAGACTGACAACTTAATTCAATTGAGAAAGAAATGGT
TCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTACAGCAATTTGACTGG
ACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTATACTGTTATAATTGG
AATATTTGTCAACCTTATTGAGCATGTTTATCTATTCGTCAAAAAGCAAt
ggaaaaaaagccaaaatgatgaaaaagttACAGTTACGGTATAGATACTG
TAAGAGTCCCCTGG Coding sequence (CDS) from alignment at sc0000005:875474..877837+ >TCONS_00000717 ID=TCONS_00000717|Name=TCONS_00000717|organism=Clytia hemisphaerica|type=CDS|length=4212bp|location=Sequence derived from alignment at sc0000005:875474..877837+ (Clytia hemisphaerica) CATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTCATAT GAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCAACGC CAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTGCCAG ATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCTGTTG TTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaattaaatt ttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTTTGAA AACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAGCTGA CTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATACATAC ATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGTCAAG GAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTTCAAA TCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTGAGTA TATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTTTGTA TTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAAGAGA TATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCTCTTG GTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAGAATC ACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTTTCCA AGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATGGTTG GCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGATGAG AGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCAGTGC CATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGCCTTCATCA CAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTGCTCAGCTG GGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATCGGAAAACA TGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGAAATGATAT CTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTCAATTGAGA AAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTACAGCA ATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTATACTG TTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATCTATTCGTC AAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACAGTTACGGT ATAGCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTC ATATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCA ACGCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTG CCAGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCT GTTGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaatta aattttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTT TGAAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAG CTGACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATAC ATACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGT CAAGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTT CAAATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTG AGTATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTT TGTATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAA GAGATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCT CTTGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAG AATCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTT TCCAAGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATG GTTGGCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGA TGAGAGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCA GTGCCATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGCCTTC ATCACAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTGCTCA GCTGGGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATCGGAA AACATGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGAAATG ATATCTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTCAATT GAGAAAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTAC AGCAATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTAT ACTGTTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATCTATT CGTCAAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACAGTTA CGGTATAGCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGT TTTCATATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGT ACCAACGCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATT GTTGCCAGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACT AGCTGTTGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaa attaaattttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTA CTTTTGAAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAAT AAAGCTGACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCA ATACATACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAA GAGTCAAGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTT ATTTCAAATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTT ATTGAGTATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACC CCTTTGTATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTT CAAAGAGATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGC TGCTCTTGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTG CCAGAATCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAA GGTTTCCAAGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTAC GATGGTTGGCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACC CTGATGAGAGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTC AGCAGTGCCATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGC CTTCATCACAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTG CTCAGCTGGGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATC GGAAAACATGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGA AATGATATCTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTC AATTGAGAAAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCA GTACAGCAATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGG CTATACTGTTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATC TATTCGTCAAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACA GTTACGGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000717-exon-sc0000005-1491911889:875474..876285 | TCONS_00000717-exon-sc0000005-1491911889:875474..876285 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1510915933:875474..876285 | TCONS_00000717-exon-sc0000005-1510915933:875474..876285 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1575043694:875474..876285 | TCONS_00000717-exon-sc0000005-1575043694:875474..876285 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1491911889:876982..877151 | TCONS_00000717-exon-sc0000005-1491911889:876982..877151 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1510915933:876982..877151 | TCONS_00000717-exon-sc0000005-1510915933:876982..877151 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1575043694:876982..877151 | TCONS_00000717-exon-sc0000005-1575043694:876982..877151 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1491911889:877394..877837 | TCONS_00000717-exon-sc0000005-1491911889:877394..877837 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1510915933:877394..877837 | TCONS_00000717-exon-sc0000005-1510915933:877394..877837 | Clytia hemisphaerica | exon |
TCONS_00000717-exon-sc0000005-1575043694:877394..877837 | TCONS_00000717-exon-sc0000005-1575043694:877394..877837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000005 | supercontig | sc0000005:875474..877837 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005216 | ion channel activity |
GO:0004872 | receptor activity |
GO:0005234 | extracellular-glutamate-gated ion channel activity |
GO:0004970 | ionotropic glutamate receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0006811 | ion transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006811 |
ion transport |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
molecular_function |
GO:0005216 |
ion channel activity |
molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
molecular_function |
GO:0004872 |
receptor activity |
Blast
BLAST of TCONS_00000717 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 9.400e-26 Identity = 93/359 (25.91%), Postives = 160/359 (44.57%), Query Frame = 3
Query: 45 FHMRAVTALYAPFVTLVPTPNLTNAKTECGVAHCCQIPSKNHNGT----------------IKWKTSCCSGFTVDVFEMVQRKLNFEYTLYIVEDGKWGTFENGSWNGMIGDLVNNKADFIINIMTPLEQRAQYIHFTNHFMESDFGI-ARVKEMTKDISSYIFKQLISNPLKRXXXXXXXXXXXXXXXFENL-----------NAKCTSNPFVFLQDTMAYVFGLTFQRDMGGTNPRMWSGRLAALGYASAMTIIMSIYTARITANSIEQVVLXXXXXXXXXXXXNPTENYKFTMVGNQGWAIESYFREHPDESYRRMYKFMSKYFVSSAMEGVQKLLDG--SIQAFITDSGSFPVEL 1031
H+R VT + PFV + + C C P N + T IK+K CC G+ +D+ E + +NF++ LYIV DGK+G ++NG W G++GDL+ A + + R+Q I FT+ F + GI R ++ I ++++ PL + + + VAL ++F L + S F F + + L F R + P+ W+GR +A +S YTA + A + + + ++ G D K +P++ ++F V + E Y R +S+ M+++M +Y V + +GV+ L + + AFI D E+
Sbjct: 513 LHLRVVTLIEHPFVFT----REVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFK-KCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMW------PLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSF-SSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRES--SAEDYVR----QSFPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEV 853
The following BLAST results are available for this feature:
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