|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000717 ID=TCONS_00000717|Name=TCONS_00000717|organism=Clytia hemisphaerica|type=transcript|length=1426bp
ATCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTCAT
ATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCAAC
GCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTGCC
AGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCTGT
TGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaattaaa
ttttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTTTG
AAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAGCT
GACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATACAT
ACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGTCA
AGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTTCA
AATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTGAG
TATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTTTG
TATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAAGA
GATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCTCT
TGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAGAA
TCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTTTC
CAAGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATGGT
TGGCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGATG
AGAGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCAGT
GCCATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGCCTTCAT
CACAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTGCTCAGC
TGGGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATCGGAAAA
CATGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGAAATGAT
ATCTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTCAATTGA
GAAAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTACAG
CAATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTATAC
TGTTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATCTATTCG
TCAAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACAGTTACG
GTATAGATACTGTAAGAGTCCCCTGG Run BLAST on NCBI protein sequence of TCONS_00000717-protein >TCONS_00000717-protein ID=TCONS_00000717-protein|Name=TCONS_00000717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
HGKFNGYFNSNHISFHMRAVTALYAPFVTLVPTPNLTNAKTECGVAHCCQ
IPSKNHNGTIKWKTSCCSGFTVDVFEMVQRKLNFEYTLYIVEDGKWGTFE
NGSWNGMIGDLVNNKADFIINIMTPLEQRAQYIHFTNHFMESDFGIARVK
EMTKDISSYIFKQLISNPLKRALLVSLIVALLSISLFENLNAKCTSNPFV
FLQDTMAYVFGLTFQRDMGGTNPRMWSGRLAALGYASAMTIIMSIYTARI
TANSIEQVVLDDFKGFQDDKFQNPTENYKFTMVGNQGWAIESYFREHPDE
SYRRMYKFMSKYFVSSAMEGVQKLLDGSIQAFITDSGSFPVELHKIVAQL
GCPKEIELLENTYIGKHGLSFAYRKNFTYGEMISNALLGLYETDNLIQLR
KKWFPSSHCKGKTPVQQFDWTYFSSILVLVGYTVIIGIFVNLIEHVYLFV
KKQWKKSQNDEKVTVTV Run BLAST on NCBI transcript from alignment at sc0000005:875474..877837+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000717 ID=TCONS_00000717|Name=TCONS_00000717|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at sc0000005:875474..877837+ (Clytia hemisphaerica)
ATCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTCAT
ATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCAAC
GCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTGCC
AGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCTGT
TGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaattaaa
ttttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTTTG
AAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAGCT
GACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATACAT
ACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGTCA
AGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTTCA
AATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTGAG
TATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTTTG
TATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAAGA
GATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCTCT
TGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAGAA
TCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTTTC
CAAGATGATAAGGTATTTAGTTTGCTTAACCCATAATCTTTGAGCAATTC
TACACTGACACTCAATCTAAAGGCCAGTTCCGTAAGAGAGGCTACCCAGG
CTGGCAAACCACTTTGAtcttttttcatccagattATTGATGAATATAAA
ACCGGTTAAAAGTAAAACAATCATCCCAGAGGCAGAATTTAACCAGGTCA
TTACTTTCGCCACATCTCTTATGAGTCGAACGTGGTGTGTGCAGAGTGGA
TAATGCTCTGTTGTGATTAGGTTACCTCTGCCTTATTAAATCATATTGAA
GCAATAATATAAACACCCCTGTCCCtgaatttgatttgaaaagaaaagaa
cacccctgtctcgcagcccccggtggaacttctttTTACAATTGGGATGA
aattttctatcgaaatcccaatggggatagaaattctatttttcccATTA
AGTTCTGAATAGGGATAAACGTAAATTCAAATTTCCGGAAGGGCTGAAAT
TTTAAGCTATTTTCCCACCTGGGACGAAATTCTTACCAAATTTGGTCCAA
CCGCTATAGCATATTTAATTATTACTCGCATCGTAAGATTATCAAAAGAG
AATACACTTGGACAATAGGATTCCTAAATTGTTACACTTATAATTATTGG
ATCCAAATCTCTATATTACTTTTCATGTTAGCTTTAATTAAACTTTCACT
ACTTTTAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATGGTTGGC
AATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGATGAGAG
CTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCAGTGCCA
TGGAAGGTGTTCAAAAATTGCTAGATGGGTAAGTGCACCTGAAATTGAGA
AAATAAACTGTGAAGCTTGCATTGTCTTGATGTCTGTATTAGAAAACATA
TTTGTGTTATTGTaactcaattttcttttcacTGCTGCAATTTTGTGGAA
AagtatatttcatattttaccgctCCGGAAAAGATTTGTTAAGTTACATT
TTAGATTCTTACAATCTTAGCAATCTTAATGAAGGGCTAATTGAATGATT
CGACGAATTTGTTTTACTAGATCAATTCAAGCCTTCATCACAGACAGTGG
CTCATTTCCAGTCGAATTACATAAAATTGTTGCTCAGCTGGGATGCCCAA
AAGAAATCGAGTTATTGGAAAATACGTATATCGGAAAACATGGATTGTCA
TTCGCTTATCGTAAGAATTTCACTTATGGAGAAATGATATCTAATGCTTT
ATTAGGTCTTTACGAGACTGACAACTTAATTCAATTGAGAAAGAAATGGT
TCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTACAGCAATTTGACTGG
ACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTATACTGTTATAATTGG
AATATTTGTCAACCTTATTGAGCATGTTTATCTATTCGTCAAAAAGCAAt
ggaaaaaaagccaaaatgatgaaaaagttACAGTTACGGTATAGATACTG
TAAGAGTCCCCTGG Coding sequence (CDS) from alignment at sc0000005:875474..877837+ >TCONS_00000717 ID=TCONS_00000717|Name=TCONS_00000717|organism=Clytia hemisphaerica|type=CDS|length=4212bp|location=Sequence derived from alignment at sc0000005:875474..877837+ (Clytia hemisphaerica)
CATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTCATAT
GAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCAACGC
CAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTGCCAG
ATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCTGTTG
TTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaattaaatt
ttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTTTGAA
AACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAGCTGA
CTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATACATAC
ATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGTCAAG
GAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTTCAAA
TCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTGAGTA
TATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTTTGTA
TTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAAGAGA
TATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCTCTTG
GTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAGAATC
ACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTTTCCA
AGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATGGTTG
GCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGATGAG
AGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCAGTGC
CATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGCCTTCATCA
CAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTGCTCAGCTG
GGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATCGGAAAACA
TGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGAAATGATAT
CTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTCAATTGAGA
AAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTACAGCA
ATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTATACTG
TTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATCTATTCGTC
AAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACAGTTACGGT
ATAGCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGTTTTC
ATATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGTACCA
ACGCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATTGTTG
CCAGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACTAGCT
GTTGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaaatta
aattttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTACTTT
TGAAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAATAAAG
CTGACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCAATAC
ATACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAAGAGT
CAAGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTTATTT
CAAATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTTATTG
AGTATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACCCCTT
TGTATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTTCAAA
GAGATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGCTGCT
CTTGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTGCCAG
AATCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAAGGTT
TCCAAGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTACGATG
GTTGGCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACCCTGA
TGAGAGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTCAGCA
GTGCCATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGCCTTC
ATCACAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTGCTCA
GCTGGGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATCGGAA
AACATGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGAAATG
ATATCTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTCAATT
GAGAAAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTAC
AGCAATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGGCTAT
ACTGTTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATCTATT
CGTCAAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACAGTTA
CGGTATAGCATGGGAAGTTTAATGGATATTTTAACTCGAATCATATCAGT
TTTCATATGAGAGCTGTAACAGCACTTTATGCCCCATTTGTTACACTTGT
ACCAACGCCAAACTTAACCAACGCTAAAACAGAATGTGGGGTCGCCCATT
GTTGCCAGATACCATCCAAAAATCATAACGGAACAATAAAATGGAAAACT
AGCTGTTGTTCTGGCTTTACCGTAGACGTTTTTGAAATGGtgcaaagaaa
attaaattttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGTA
CTTTTGAAAACGGATCTTGGAATGGGATGATTGGGGATCTCGTAAACAAT
AAAGCTGACTTCATTATCAATATCATGACTCCTCTGGAGCAAAGGGCGCA
ATACATACATTTTACAAACCATTTTATGGAATCTGATTTTGGAATTGCAA
GAGTCAAGGAAATGACAAAGGACATATCGAGCTATATTTTTAAACAGCTT
ATTTCAAATCCTTTGAAAAGAGCTTTGCTAGTTTCCTTGATAGTGGCTTT
ATTGAGTATATCTTTATTTGAGAATCTCAATGCAAAGTGTACAAGTAACC
CCTTTGTATTTTTGCAAGATACCATGGCTTATGTCTTTGGACTGACATTT
CAAAGAGATATGGGAGGTACAAATCCTCGAATGTGGTCAGGGCGTCTTGC
TGCTCTTGGTTATGCATCTGCAATGACCATCATTATGTCCATCTATACTG
CCAGAATCACTGCTAACTCTATTGAGCAGGTCGTTCTGGATGACTTCAAA
GGTTTCCAAGATGATAAGTTTCAAAACCCAACAGAAAACTACAAATTTAC
GATGGTTGGCAATCAAGGATGGGCTATAGAGTCATACTTTAGAGAACACC
CTGATGAGAGCTATCGTAGGATGTATAAATTCATGTCTAAATACTTTGTC
AGCAGTGCCATGGAAGGTGTTCAAAAATTGCTAGATGGATCAATTCAAGC
CTTCATCACAGACAGTGGCTCATTTCCAGTCGAATTACATAAAATTGTTG
CTCAGCTGGGATGCCCAAAAGAAATCGAGTTATTGGAAAATACGTATATC
GGAAAACATGGATTGTCATTCGCTTATCGTAAGAATTTCACTTATGGAGA
AATGATATCTAATGCTTTATTAGGTCTTTACGAGACTGACAACTTAATTC
AATTGAGAAAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCA
GTACAGCAATTTGACTGGACTTATTTTTCTAGTATTTTGGTTCTCGTTGG
CTATACTGTTATAATTGGAATATTTGTCAACCTTATTGAGCATGTTTATC
TATTCGTCAAAAAGCAAtggaaaaaaagccaaaatgatgaaaaagttACA
GTTACGGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000717-exon-sc0000005-1491911889:875474..876285 | TCONS_00000717-exon-sc0000005-1491911889:875474..876285 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1510915933:875474..876285 | TCONS_00000717-exon-sc0000005-1510915933:875474..876285 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1575043694:875474..876285 | TCONS_00000717-exon-sc0000005-1575043694:875474..876285 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1491911889:876982..877151 | TCONS_00000717-exon-sc0000005-1491911889:876982..877151 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1510915933:876982..877151 | TCONS_00000717-exon-sc0000005-1510915933:876982..877151 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1575043694:876982..877151 | TCONS_00000717-exon-sc0000005-1575043694:876982..877151 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1491911889:877394..877837 | TCONS_00000717-exon-sc0000005-1491911889:877394..877837 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1510915933:877394..877837 | TCONS_00000717-exon-sc0000005-1510915933:877394..877837 | Clytia hemisphaerica | exon |
| TCONS_00000717-exon-sc0000005-1575043694:877394..877837 | TCONS_00000717-exon-sc0000005-1575043694:877394..877837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:875474..877837 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005216 | ion channel activity |
| GO:0004872 | receptor activity |
| GO:0005234 | extracellular-glutamate-gated ion channel activity |
| GO:0004970 | ionotropic glutamate receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006811 | ion transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
| molecular_function |
GO:0004872 |
receptor activity |
Blast
BLAST of TCONS_00000717 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 9.400e-26 Identity = 93/359 (25.91%), Postives = 160/359 (44.57%), Query Frame = 3
Query: 45 FHMRAVTALYAPFVTLVPTPNLTNAKTECGVAHCCQIPSKNHNGT----------------IKWKTSCCSGFTVDVFEMVQRKLNFEYTLYIVEDGKWGTFENGSWNGMIGDLVNNKADFIINIMTPLEQRAQYIHFTNHFMESDFGI-ARVKEMTKDISSYIFKQLISNPLKRXXXXXXXXXXXXXXXFENL-----------NAKCTSNPFVFLQDTMAYVFGLTFQRDMGGTNPRMWSGRLAALGYASAMTIIMSIYTARITANSIEQVVLXXXXXXXXXXXXNPTENYKFTMVGNQGWAIESYFREHPDESYRRMYKFMSKYFVSSAMEGVQKLLDG--SIQAFITDSGSFPVEL 1031
H+R VT + PFV + + C C P N + T IK+K CC G+ +D+ E + +NF++ LYIV DGK+G ++NG W G++GDL+ A + + R+Q I FT+ F + GI R ++ I ++++ PL + + + VAL ++F L + S F F + + L F R + P+ W+GR +A +S YTA + A + + + ++ G D K +P++ ++F V + E Y R +S+ M+++M +Y V + +GV+ L + + AFI D E+
Sbjct: 513 LHLRVVTLIEHPFVFT----REVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFK-KCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMW------PLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSF-SSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRES--SAEDYVR----QSFPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEV 853
The following BLAST results are available for this feature:
|
