TCONS_00000717-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000717-protein
Unique NameTCONS_00000717-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000717-protein ID=TCONS_00000717-protein|Name=TCONS_00000717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
HGKFNGYFNSNHISFHMRAVTALYAPFVTLVPTPNLTNAKTECGVAHCCQ
IPSKNHNGTIKWKTSCCSGFTVDVFEMVQRKLNFEYTLYIVEDGKWGTFE
NGSWNGMIGDLVNNKADFIINIMTPLEQRAQYIHFTNHFMESDFGIARVK
EMTKDISSYIFKQLISNPLKRALLVSLIVALLSISLFENLNAKCTSNPFV
FLQDTMAYVFGLTFQRDMGGTNPRMWSGRLAALGYASAMTIIMSIYTARI
TANSIEQVVLDDFKGFQDDKFQNPTENYKFTMVGNQGWAIESYFREHPDE
SYRRMYKFMSKYFVSSAMEGVQKLLDGSIQAFITDSGSFPVELHKIVAQL
GCPKEIELLENTYIGKHGLSFAYRKNFTYGEMISNALLGLYETDNLIQLR
KKWFPSSHCKGKTPVQQFDWTYFSSILVLVGYTVIIGIFVNLIEHVYLFV
KKQWKKSQNDEKVTVTV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000451XLOC_000451Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000717TCONS_00000717Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001508Iono_rcpt_met
IPR019594Glu/Gly-bd
IPR001320Iontro_rcpt
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0004872receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0005216 ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
molecular_function GO:0004872 receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001508Ionotropic glutamate receptor, metazoaPRINTSPR00177NMDARECEPTORcoord: 84..112
score: 30.34
coord: 423..447
score: 31.6
coord: 230..257
score: 25.0
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 52..113
e-value: 1.6E-15
score: 67.6
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 63..147
e-value: 8.4E-22
score: 77.4
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 59..406
e-value: 1.6E-7
score: 13.5
NoneNo IPR availableGENE3D3.40.190.10coord: 253..344
e-value: 7.5E-11
score: 41.8
NoneNo IPR availableGENE3D3.40.190.10coord: 13..167
e-value: 1.5E-26
score: 92.2
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 268..408
coord: 18..151

Blast
[Close]
BLAST of TCONS_00000717-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.659e-38
Identity = 120/470 (25.53%), Postives = 210/470 (44.68%), Query Frame = 0 
Query:   12 HISFHMRAVTALYAPFVTLVPTPNLTNAKTECGVAH------CCQIPSKNHNGTIKWKT-SCCSGFTVDVFEMVQRKLNFEYTLYIVEDGKWGTFEN------GSWNGMIGDLVNNKADFIINIMTPLEQRAQYIHFTNHFMESDFGIARVKEMTKDISSYIFKQLISNPLKRALLVSLIVALLSISLFE----------NLNAKCTSNPFVFLQDTMAYVFGLTFQRDMGGTNPRMWSGRLAALGYASAMTIIMSIYTARITANSIEQVVLDDFKGFQDDKFQNPTENYKFTMVGNQGWAIESYFREHPDESYRRMYKFMSKYFVSSAMEGVQKLLDGSIQAFITDSGSFPVELHKIVAQLGCPKEIELLENTYI-GKHGLSFAYRKNFTYGEMISNALLGLYETDNLIQLRKKWFPSSHCKGKTPVQQ-FDWTYFSSILVLVGYTVIIGIFVNLIEHVYLFVKKQWKK 456
             +S  ++ VT    PFV + PT +    K E  V         C  P+    G+ +     CC GF +D+   + R +NF Y +++V DGK+GT E         WNGM+G+L++ +AD I+  +T   +RAQYI F+  F      I   KE+ +      F Q   + L   LLV L V ++++ L+            +N++      + L   M + +G+     +G   PR +S R+  + +A    II++ YTA + A  +     +   G  D + +NP++ + +  V     +++ YFR   + S   MY+ M K+   SA E +Q + D  + AFI DS          V +    ++ +L+    +  + G     RK+  + + +S ++L  +E   +  L K W     C  ++       +   + + +LV   ++ GIF+  IE  Y   K   +K
Sbjct:  393 QMSTRLKIVTIHQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDS-FMQPFQSTL--WLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQS--SVDIYFRRQVELST--MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSA---------VLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRK 846
The following BLAST results are available for this feature:
BLAST of TCONS_00000717-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ13.659e-3825.53Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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