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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000705 ID=TCONS_00000705|Name=TCONS_00000705|organism=Clytia hemisphaerica|type=transcript|length=3584bpRun BLAST on NCBI protein sequence of TCONS_00000705-protein >TCONS_00000705-protein ID=TCONS_00000705-protein|Name=TCONS_00000705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp MPGLVVFNRRWVAASDELVIPFGLAFVFRLFWFLAVGTIFGVHYEIGHQNRun BLAST on NCBI transcript from alignment at sc0000005:580799..613822+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000705 ID=TCONS_00000705|Name=TCONS_00000705|organism=Clytia hemisphaerica|type=transcript|length=33024bp|location=Sequence derived from alignment at sc0000005:580799..613822+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:580799..613822+ >TCONS_00000705 ID=TCONS_00000705|Name=TCONS_00000705|organism=Clytia hemisphaerica|type=CDS|length=34695bp|location=Sequence derived from alignment at sc0000005:580799..613822+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000705 vs. Swiss-Prot (Human)
Match: DGLA (Sn1-specific diacylglycerol lipase alpha OS=Homo sapiens GN=DAGLA PE=1 SV=3) HSP 1 Score: 291.582 bits (745), Expect = 5.586e-82 Identity = 232/790 (29.37%), Postives = 381/790 (48.23%), Query Frame = 2
Query: 230 MPGLVVFNRRWVAASDELVIPFGLAFVFRLFWFLAVGTI-FGVHYEIGHQNVPEDCNLHRSHXXXXXXXXXXXXSLVNDAAVAIVSSRGTIFDKTSRRKIPSLLYFRSFILFIEACVSGLGIYYV--FYKSRHCFRGYDAVLSKLVVIFNIVWVLGCLVLIWFTYDPAGSIWFELQMRSHNKKASKYQSVETIDVENRIYEKNEKYWSRACRLLFCCTKAENSRDNVLLFASKLFTNYFRNYHDLVPSDILAGMILLRQKQKYEEFKRIQHELKHTDSSYQEVTIHKKFKTVRRHQKTINAIPFDNNSPEDKKILDDITYFANYALASYGWPMYCFLNKIPICKKEGCMLLNQVT--XXXXXXXXXXXXKTHGDNCCLCN-LAAQKTIL--KMNNDNFIYVSYESVVFKTPFTVVVDNTRNAIVISCRGTLSLHDILTDLAIEEVSLP--GCDEKWTAHKGFFEAATAIKAIIDEKDLIKQAQNFDVDKGTQNYKLVIVGHSXXXXXXXXXXXXXKPEYPDLLCYAYAPPGATVNYEASNYARSFIHSVILGKDMIGRMNYYTLNELQHNIVKLLERTKLPKWRILRGC--------MCQCVLCCTHADARXXXXXXXXXXXXXXXXXXRPDINKLYMAGKVVHICKIRSVYPSCGSKKG--EYKAFWSTPEDFQNILISNLMLRDHYPDALINALGSLLSLDEEEYVINATGSPTEQGSASINIYLSGLSDDLNPE---SEEPFLARPKLAVD---ETPLLEHPDGQTKPDPASPSILLTGSTKDILGP 2521
MPG+VVF RRW SD+LV+P F+ WF+ + + FG+ Y N E C+L+ LL ++ + A+ +S RG I R + +LY R IL IE + +GI ++ +Y S + + L +V+ N V +L + + +DP G + +L+ ++ ++ T ++ +R+ E WSR ++ CCT+ ++S+ + + LF +FR+ D+VPSDI+AG++LLRQ+Q+ + + D + ++ V R+ K ++ NS E + ++ Y+ +ALA+YGWPMY L + P C C L + C + DNCC CN +A ++ L M + +Y S V++TPF V VD+ + +VIS RGTLS D LTDL + LP G W HKG +A IK ++++ ++ QA D+ +GT++Y L++VGHSLG GTA +L+FLL+P+YP L C+AY+PPG ++ +A Y++ F+ +V+LGKD++ R+ L + ++ +L+R+ PKWRI+ G + + V T A R + D + LY G+++H+ C ++ Y A W + F ++IS ML +H P ++ L +L N T SA+ + +S DL PE ++P P + E P +H + + S L S +L P
Sbjct: 1 MPGIVVFRRRWSVGSDDLVLPAIFLFLLHTTWFVILSVVLFGLVY-----NPHEACSLNLVDHGRGYLGILLS-CMIAEMAIIWLSMRGGILYTEPRDSMQYVLYVRLAILVIEFIYAIVGIVWLTQYYTSCNDLTAKNVTLG--MVVCNWVVILSVCITVLCVFDPTGRTFVKLRATKRRQR-----NLRTYNLRHRLEEGQATSWSRRLKVFLCCTRTKDSQSDAYSEIAYLFAEFFRDL-DIVPSDIIAGLVLLRQRQRAKRNAVL-------DEANNDILAFLSGMPVTRNTKYLDL----KNSQEMLRY-KEVCYYMLFALAAYGWPMY--LMRKPACGL--CQLARSCSCCLCPARPRFAPGVTIEEDNCCGCNAIAIRRHFLDENMTAVDIVYTSCHDAVYETPFYVAVDHDKKKVVISIRGTLSPKDALTDLTGDAERLPVEGHHGTWLGHKGMVLSAEYIKKKLEQEMVLSQAFGRDLGRGTKHYGLIVVGHSLGAGTAAILSFLLRPQYPTLKCFAYSPPGGLLSEDAMEYSKEFVTAVVLGKDLVPRIGLSQLEGFRRQLLDVLQRSTKPKWRIIVGATKCIPKSELPEEVEVTTLASTRLWTHPSDLTIALSAS-------TPLYPPGRIIHVVHNHPAEQCCCCEQEEPTYFAIWGDNKAFNEVIISPAMLHEHLPYVVMEGLNKVLE--------NYNKGKTALLSAA-KVMVSPTEVDLTPELIFQQQPLPTGPPMPTGLALELPTADHRNSSVRSKSQSEMSLEGFSEGRLLSP 744 The following BLAST results are available for this feature:
BLAST of TCONS_00000705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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