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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000699 ID=TCONS_00000699|Name=TCONS_00000699|organism=Clytia hemisphaerica|type=transcript|length=3540bpRun BLAST on NCBI protein sequence of TCONS_00000699-protein >TCONS_00000699-protein ID=TCONS_00000699-protein|Name=TCONS_00000699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp MAASGFGGFKFGSANPTTSTTGFSLGGAKTTASAFSFGTPQATTTASTGFRun BLAST on NCBI transcript from alignment at sc0000005:505453..522438+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000699 ID=TCONS_00000699|Name=TCONS_00000699|organism=Clytia hemisphaerica|type=transcript|length=16986bp|location=Sequence derived from alignment at sc0000005:505453..522438+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:505453..522438+ >TCONS_00000699 ID=TCONS_00000699|Name=TCONS_00000699|organism=Clytia hemisphaerica|type=CDS|length=20706bp|location=Sequence derived from alignment at sc0000005:505453..522438+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000699 vs. Swiss-Prot (Human)
Match: NUP58 (Nucleoporin p58/p45 OS=Homo sapiens GN=NUP58 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.374e-47 Identity = 82/220 (37.27%), Postives = 144/220 (65.45%), Query Frame = 1
Query: 709 PEN---VKEQTVPTELNSLVDNIEKHIKKQKEVKDEISKISSEQISTTRDELKSLQQNAALIGNALQRNSIAVENLKLSVNQELKNGEICHRLNQVAGSTHHDFTAPIEYFQRLVYSFESRISNYRQELEELEAFLTSASPINDFSPQDLSSIMKRLNESFIGLASELYQVHEQIKIMKEKYLHYRRVVFSDASDPFAPRK--KKMILAAMKVTKGPSPF 1353
PE+ +K++ +P + V+N++K +K+QK+V++EIS++SS+ + ++++K+L+Q +L N +QRN++ ++ LK+ QELKN EI R + H++ AP +YF+ LV FE ++ YRQ++EELE L + + + +PQDLS M+++ ++F+ LA++L +HE +K++KE+YL YR++ DA D F R+ K +VT GP+PF
Sbjct: 236 PEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPF 455 The following BLAST results are available for this feature:
BLAST of TCONS_00000699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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