TCONS_00000699-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000699-protein
Unique Name	TCONS_00000699-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	492

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000699-protein ID=TCONS_00000699-protein|Name=TCONS_00000699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MAASGFGGFKFGSANPTTSTTGFSLGGAKTTASAFSFGTPQATTTASTGF
SFGSAASQPAKTGVATAFSFGGAAKATAASTGFSFGGATTTTAASTGFSF
GGAATTTTASTGFGGSLFGKTTTAATTGFSLTGATTGSAPAFKLGGTSTA
TVGGFGLSKPATTNATENKPPENVKEQTVPTELNSLVDNIEKHIKKQKEV
KDEISKISSEQISTTRDELKSLQQNAALIGNALQRNSIAVENLKLSVNQE
LKNGEICHRLNQVAGSTHHDFTAPIEYFQRLVYSFESRISNYRQELEELE
AFLTSASPINDFSPQDLSSIMKRLNESFIGLASELYQVHEQIKIMKEKYL
HYRRVVFSDASDPFAPRKKKMILAAMKVTKGPSPFPVAQGASIMAAAFKT
EQKSTATIGGTTLTKPSCFPAGSTSSFSLSKPTGLTRSFSFDGSSNNKTN
LGGSLSASGSLFNKPTLGVTPSLNSGSFTLQNPPCGKRGRIL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000442	XLOC_000442	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000699	TCONS_00000699	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 183..203
None	No IPR available	PFAM	PF15967	Nucleoporin_FG2	coord: 119..467 e-value: 2.5E-56 score: 191.4
None	No IPR available	GENE3D	1.20.5.110		coord: 254..344 e-value: 0.23 score: 11.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..177

Blast

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BLAST of TCONS_00000699-protein vs. Swiss-Prot (Human)
Match: NUP58 (Nucleoporin p58/p45 OS=Homo sapiens GN=NUP58 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.831e-54
Identity = 82/220 (37.27%), Postives = 144/220 (65.45%), Query Frame = 0

Query:  171 PEN---VKEQTVPTELNSLVDNIEKHIKKQKEVKDEISKISSEQISTTRDELKSLQQNAALIGNALQRNSIAVENLKLSVNQELKNGEICHRLNQVAGSTHHDFTAPIEYFQRLVYSFESRISNYRQELEELEAFLTSASPINDFSPQDLSSIMKRLNESFIGLASELYQVHEQIKIMKEKYLHYRRVVFSDASDPFAPRK--KKMILAAMKVTKGPSPF 385
            PE+   +K++ +P  +   V+N++K +K+QK+V++EIS++SS+ +   ++++K+L+Q  +L  N +QRN++ ++ LK+   QELKN EI  R  +      H++ AP +YF+ LV  FE ++  YRQ++EELE  L + +  +  +PQDLS  M+++ ++F+ LA++L  +HE +K++KE+YL YR++   DA D F  R+   K      +VT GP+PF
Sbjct:  236 PEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPF 455

The following BLAST results are available for this feature:

BLAST of TCONS_00000699-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000699-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
NUP58	1.831e-54	37.27	Nucleoporin p58/p45 OS=Homo sapiens GN=NUP58 PE=1 ...	[more]

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TCONS_00000699-protein (polypeptide) - C. hemisphaerica

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