TCONS_00000699-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000699-protein
Unique NameTCONS_00000699-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000699-protein ID=TCONS_00000699-protein|Name=TCONS_00000699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MAASGFGGFKFGSANPTTSTTGFSLGGAKTTASAFSFGTPQATTTASTGF
SFGSAASQPAKTGVATAFSFGGAAKATAASTGFSFGGATTTTAASTGFSF
GGAATTTTASTGFGGSLFGKTTTAATTGFSLTGATTGSAPAFKLGGTSTA
TVGGFGLSKPATTNATENKPPENVKEQTVPTELNSLVDNIEKHIKKQKEV
KDEISKISSEQISTTRDELKSLQQNAALIGNALQRNSIAVENLKLSVNQE
LKNGEICHRLNQVAGSTHHDFTAPIEYFQRLVYSFESRISNYRQELEELE
AFLTSASPINDFSPQDLSSIMKRLNESFIGLASELYQVHEQIKIMKEKYL
HYRRVVFSDASDPFAPRKKKMILAAMKVTKGPSPFPVAQGASIMAAAFKT
EQKSTATIGGTTLTKPSCFPAGSTSSFSLSKPTGLTRSFSFDGSSNNKTN
LGGSLSASGSLFNKPTLGVTPSLNSGSFTLQNPPCGKRGRIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000442XLOC_000442Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000699TCONS_00000699Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 183..203
NoneNo IPR availablePFAMPF15967Nucleoporin_FG2coord: 119..467
e-value: 2.5E-56
score: 191.4
NoneNo IPR availableGENE3D1.20.5.110coord: 254..344
e-value: 0.23
score: 11.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..177

Blast
[Close]
BLAST of TCONS_00000699-protein vs. Swiss-Prot (Human)
Match: NUP58 (Nucleoporin p58/p45 OS=Homo sapiens GN=NUP58 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.831e-54
Identity = 82/220 (37.27%), Postives = 144/220 (65.45%), Query Frame = 0 
Query:  171 PEN---VKEQTVPTELNSLVDNIEKHIKKQKEVKDEISKISSEQISTTRDELKSLQQNAALIGNALQRNSIAVENLKLSVNQELKNGEICHRLNQVAGSTHHDFTAPIEYFQRLVYSFESRISNYRQELEELEAFLTSASPINDFSPQDLSSIMKRLNESFIGLASELYQVHEQIKIMKEKYLHYRRVVFSDASDPFAPRK--KKMILAAMKVTKGPSPF 385
            PE+   +K++ +P  +   V+N++K +K+QK+V++EIS++SS+ +   ++++K+L+Q  +L  N +QRN++ ++ LK+   QELKN EI  R  +      H++ AP +YF+ LV  FE ++  YRQ++EELE  L + +  +  +PQDLS  M+++ ++F+ LA++L  +HE +K++KE+YL YR++   DA D F  R+   K      +VT GP+PF
Sbjct:  236 PEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPF 455
The following BLAST results are available for this feature:
BLAST of TCONS_00000699-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUP581.831e-5437.27Nucleoporin p58/p45 OS=Homo sapiens GN=NUP58 PE=1 ... [more]
back to top