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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000691 ID=TCONS_00000691|Name=TCONS_00000691|organism=Clytia hemisphaerica|type=transcript|length=1714bp
CCATCTTGAATTTAAAGTGTTAagttttcaattaaaacttaTGACATAgt
tcaaagaaattttaattAGATTTCCAATcctaaaaaaaagttaattccTC
ACTCTTATAATCGCAAAAAACATTCAACGAAGACTGTAAGCAGAAATTAA
GTAATGTTCTCTGCGAGAATACAAATGGACATGCATAAAGTAATAATTTG
TAGCTTAATGGTTTCCCTTATCATTAATGGGAATCTTGCACAAGAAATGC
AACTTAACTCTCATTTTCGcctggaaaaagaaaattacatcATCAAAAAT
GGCTCTCATATACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAATTGA
ATGCTTGTTAAAATGTCAACTCAATTATTTGGCGTGCTTCACTCTTGAAA
TTCTGAAGATGGGTTTAACAAGCTGGTTGTGTCGATTTTACAATGTCGAT
TTCATGAAATTGAGTTATGAATCAAAAGAGGGGTCAATGGTTTATTCTAC
TACTGCACGAAGTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTGGATG
GTGTGTATAAAATACTGACCGTTGGAGAAGAAAAGGAAGTCTACTGCGAC
ATGACTGGAGGAGGGTGGACAACGATTCAACGCCGAGTAAACGGTGACAT
TGATTTCAATCGAGGTTGGCAATCATACAAAGAAGGCTTTGGCGATGTCA
ATGGTGATTTTTGGATTGGTTTGGAAACCATTCGAGAAATGAGTGTGTTG
TTGAATAACACTTTGATTCGAATTCAAGGTGAAAGTTTTAACGGAGATCG
AAGATTTATCATTGCAAAGGGATTCTACATCAAAGACGAACAAAAGAAAT
ACAAATTGCATTCTGGGACAATGATCAATGATGAATGGGATATCGGACGT
GATTGGACATTTCAAGATGGTGAAATGTTCACAACACAAGATGATGATAA
TGATAAAAAAGGTGGTGGCAATTGTGCACAAGAATTTGCTTGTGCTTGGT
GGTATGTGCGCTGTTTCGCAATGAATGCTAACAGAGCACcagcaaaacaa
caacaaacaacatACGCAGGCGGTATCAACTGGCCCGCCTGGCTGGGCAG
TCACTATCAATCATTGAAAGCCATGAATATGGCAATAAAGAAAATGACCT
AATCAAAAGCCTCCTTTTTAATAACCGCAACAATTTGATTACAAATAACT
TGACCGAAATTTAATCAACGAGCctcatttattcaaaaaaaaacataagt
aATAGTTTTCGCACGGTACCGAATACAATATGGAATATGTTTTTCTCGTT
TAgagaaatatatattttcctcgcctataTCTAATATTGTACCGTTAAAA
GTacgataactggtttatcgtcaacttgaaaaatatctaCAAAAACTTTT
CTCCCTCTATTTgtgtctttttctatgttttgcTTTTCTCTTCTTGGTTT
TTCTCTCGCTAATTtgatgaaatcaacatcaacacattcgaaaaaaataa
tcgAACGGCcattaaaaagacaaaaacatttCTAATAAGTTGTTGTGTAT
TGCAAgcgaaaagaaaacatttccaACCATATAATTGTAAAAGCTATGAT
ATCTCGTttaccagaccccttttttgAATGCAGTCTTGTAATTTTACGAT
CCAATATGACCGTGCCTTCTTTGGCCCAttagattgctcatatttttttg
ACGATAAGtctgtt Run BLAST on NCBI transcript from alignment at sc0000005:196585..200728+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000691 ID=TCONS_00000691|Name=TCONS_00000691|organism=Clytia hemisphaerica|type=transcript|length=4144bp|location=Sequence derived from alignment at sc0000005:196585..200728+ (Clytia hemisphaerica)
CCATCTTGAATTTAAAGTGTTAagttttcaattaaaacttaTGACATAgt
tcaaagaaattttaattAGATTTCCAATcctaaaaaaaagttaattccTC
ACTCTTATAATCGCAAAAAACATTCAACGAAGACTGTAAGCAGAAATTAA
GTAATGTTCTCTGCGAGAATACAAATGGACATGCATAAAGTAATAATTTG
TAGCTTAATGGTTTCCCTTATCATTAATGGGAATCTTGCACAAGAAATGC
AACTTAACTCTCATTTTCGcctggaaaaagaaaattacatcATCAAAAAT
GGCTCTCATATACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAATTGA
ATGCTTGTTAAAATGTCAACTCAATTATTTGGCGTGCTTCACTCTTGAAA
TTCTGAAGATGGGTTTAACAAGCTGGTTGTGTCGATTTTACAATGTCGAT
TTCATGAAATTGAGTTATGAATCAAAAGAGGGGTCAATGGTTTATTCTAC
TACTGCACGAAGTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTGGATG
GTGTGTATAAAATACTGACCGTTGGAGAAGAAAAGGAAGTCTACTGCGAC
ATGACTGGTAAATAAAGTTCGATTCCATTTATCTGAGGTCATAAAAACAT
CATGTTATTCTCACAAACTTTTACCAAATTAGCCTAGGCTTCAAAACCGA
AATTTAACATTGATCAGAACATTAGATCGCTAAACGACGGTTACTATANA
CGtcatactttaggcgtagaaactttcgcgagcagaaactttcgcgattt
tcgcgaattttggcccttttcgcgaaagtaaatgtctttaaaaattctag
gaagtgccattcgcgaaagtttatgctcgcgaaaaattcttgccaaaata
gaaaatctgtaaaacttcaaactttgaataaaatgtaacttttatggcac
tttttagcctgctaaaagactaacaagtcaaaggacaaatgtttcaagcc
aacccaagaagtatttgtgtctctaagccattttttcatgtgaaaattct
caattttacgtcttgattcgcgaaagtttatgctcgcgaaaaatattttt
ccgttaaattctcgaaagtaaatgtcgtgaatttcgcgatttttcgtcat
cgcgaaagtttctgctcgcgaaagtttgtacgcccaAAGTAGCCAttccg
gcgtcgtccgagacgactctgCTCCAAGTAAATTTTTCTTGCTTCGCCTG
CTTAAAATGTGCTGTCCAGCTCCTTGATAATTTGTAAAACTCTGATGTCA
AAATATAATGATGATATTTTACAGGCTATGAAAAAACATTCATTTGAGAT
TTGTTCTTTTCtaaatgaatgaattttttttgaatttgaaaagaattcga
atgtcattattCTTAATAGGGTCGGCGGGAGGGTCGTTAAAAATTACATT
CGAaaagatataaaataaaaaagagaaaaaatgagagaaaaagaGTGGAC
AAGCAAAGGCAGAAACTAAATTTGCTTGATGTAGATGGGGCTTTAACTTC
AActcaaagtcatcttttaaaaagaacaaaaacataagggctacatacac
tacacaatatattgatgaaCAATATctgacaatatggtttgcggaccgta
atgtactaAGTAAATAGCAggtacttttttatgaaaaggaattttctttc
tgtaaacaatccccctatattgttggaatattgcaaatcaagctgacaat
atattgcggcaTGGCCCCCCGtcaatattttgcaaattatttttttttcg
ctttaaaaaatctgatatataccgtttagaggggtgaaataagggtgaaa
agtcgaaaattttcttcgtcgcccaaccatggagGGCAACATATATTTTT
GGCCCCTCAATTCGATTCGCACGCCGAGGGCCATGtagcggacacctttt
caatatattgacGGCATTCAGCGATATATTGGCTGAcaatattgtgtagt
gtatgtagcccttataGTGAAAACGAAAGAAACACACAAAAACAGGCTAT
CAAAAAAGACATAGACAAGCTAGACAAACAAACCAGATCAATATTCACGC
GGTCCAAATTGCGTCACaacaaaaacacaaattttcctAGAAGGAAACTT
GCtccttcaaagaaaaaaatgaccgtgggaCCGATAAAAGCAATCTTTAA
TTTTCTANAATGACCGTGGGACCGATAAAAGCAATCTTTAATATTCTTTT
CCTAGGATTTTCTTATGTCTTTTAGTAATACAGCGAGCTTGTGTGTTTTA
GGAGGAGGGTGGACAACGATTCAACGCCGAGTAAACGGTGACATTGATTT
CAATCGAGGTTGGCAATCATACAAAGAAGGCTTTGGCGATGTCAATGGTG
ATTTTTGGATTGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTGAAT
AACACTTTGATTCGAATTCAAGGTGAAAGTTTTAACGGAGATCGAAGATT
TATCATTGCAAAGGTAAAATTATAAAACTTATTAACCATTGGCGTGGTAA
GCTTTAGAGGAGACTGGTAACGAATataagagaaaaattattttcaacag
CGGTATCAAAAAGCACAATTTTATAGGAGCAATCTTGTGAAACAAAGTAA
GGTAACCTTCCATTGAAGTGACCCCAATATAGTTAAGTTACAGTATTCGA
ATGCTAAATTAGTTTGCACTCCACTGCAGAGGCCCAGGGAAATGCCTCAT
ATGGAAAAGAGTTTTTGCAGGAGTTTccttggtttgttttttttgtaaga
caGCCTTAAAATACTTTGCGCCAAGATGAGATTTTCCTTGTAAATTCGTT
ACCCATCCCCTCAAAAGCCAACCTCGCCGCTAAGAGTTGAAATGTGTATT
GCATACGGTATAATATTTGAAGTTTTCGCTTCGGTTATTATGAGTAGAAT
ACTTACTTACATCAAGCAAAAATGTCAGTTTATCAGACTTCAGTTGTTCA
ACCtattttttttcgggacactaTGTACAGTCCTTTGAAACTTTGTATAA
CCAGGAGCCTAATTGACATCAAAAGAAGTATACCATCTTTTCCCGTTTAA
TGAATAGGGATTCTACATCAAAGACGAACAAAAGAAATACAAATTGCATT
CTGGGACAATGATCAATGATGAATGGGATATCGGACGTGATTGGACATTT
CAAGATGGTGAAATGTTCACAACACAAGATGATGATAATGATAAAAAAGG
TGGTGTNATCGAagacgaacaaaaaaaaatacaaattacaTTCTGGGACA
ATGATCAATGATGAAGAGAATATCGGACTTGATTGGACATATCAAGATGG
TGCAATGTTCACAACACGGGATGATGATAATGATAAAAAAGGAGGTGGCA
ATTGTGCACAAGAATTTGCTTGTGCTTGGTGGTATGTGCGCTGTTTCGCA
ATGAATGCTAACAGAGCACcagcaaaacaacaacaaacaacatACGCAGG
CGGTATCAACTGGCCCGCCTGGCTGGGCAGTCACTATCAATCATTGAAAG
CCATGAATATGGCAATAAAGAAAATGACCTAATCAAAAGCCTCCTTTTTA
ATAACCGCAACAATTTGATTACAAATAACTTGACCGAAATTTAATCAACG
AGCctcatttattcaaaaaaaaacataagtaATAGTTTTCGCACGGTACC
GAATACAATATGGAATATGTTTTTCTCGTTTAgagaaatatatattttcc
tcgcctataTCTAATATTGTACCGTTAAAAGTacgataactggtttatcg
tcaacttgaaaaatatctaCAAAAACTTTTCTCCCTCTATTTgtgtcttt
ttctatgttttgcTTTTCTCTTCTTGGTTTTTCTCTCGCTAATTtgatga
aatcaacatcaacacattcgaaaaaaataatcgAACGGCcattaaaaaga
caaaaacatttCTAATAAGTTGTTGTGTATTGCAAgcgaaaagaaaacat
ttccaACCATATAATTGTAAAAGCTATGATATCTCGTttaccagacccct
tttttgAATGCAGTCTTGTAATTTTACGATCCAATATGACCGTGCCTTCT
TTGGCCCAttagattgctcatatttttttgACGATAAGtctgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000691-exon-sc0000005-1491911889:196585..197191 | TCONS_00000691-exon-sc0000005-1491911889:196585..197191 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1510915933:196585..197191 | TCONS_00000691-exon-sc0000005-1510915933:196585..197191 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1575043694:196585..197191 | TCONS_00000691-exon-sc0000005-1575043694:196585..197191 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1491911889:198886..199097 | TCONS_00000691-exon-sc0000005-1491911889:198886..199097 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1510915933:198886..199097 | TCONS_00000691-exon-sc0000005-1510915933:198886..199097 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1575043694:198886..199097 | TCONS_00000691-exon-sc0000005-1575043694:198886..199097 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1491911889:199692..199836 | TCONS_00000691-exon-sc0000005-1491911889:199692..199836 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1510915933:199692..199836 | TCONS_00000691-exon-sc0000005-1510915933:199692..199836 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1575043694:199692..199836 | TCONS_00000691-exon-sc0000005-1575043694:199692..199836 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1491911889:199979..200728 | TCONS_00000691-exon-sc0000005-1491911889:199979..200728 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1510915933:199979..200728 | TCONS_00000691-exon-sc0000005-1510915933:199979..200728 | Clytia hemisphaerica | exon |
| TCONS_00000691-exon-sc0000005-1575043694:199979..200728 | TCONS_00000691-exon-sc0000005-1575043694:199979..200728 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:196585..200728 + |
Blast
BLAST of TCONS_00000691 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 9.480e-32 Identity = 80/223 (35.87%), Postives = 115/223 (51.57%), Query Frame = 1
Query: 484 SMVYSTTARSCLEWLERGFTLDGVYKI-LTVGEEKEVYCDMT--GGGWTTIQRRVNGDIDFNRGWQSYKEGFGDVNGDFWIGLETIREMSVLLNNTLIRIQGESFNGDRRFIIAKGFYIKDEQKKYKLHSGTMINDEWDIGRDWTFQDGEMFTTQXXXXXXXXXXXCAQEFACAWWYVRCFAMNANRAPAKQQQTTYAGGINWPAWLGSHYQSLKAMNMAIKK 1143
S +T R+C + L+RG+ L G + I L V CDM GGGWT QRR++G +DF R W +YK+GFG G+FW+G + I ++ ++ +R+ F G+ +F K F + DE +KYKL G + G T + F+T+ D ++ NCA++F AWWY C A N N +YA GINW A G Y S K M ++
Sbjct: 108 SQSCATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTA-QGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS--AGNSLTGHNNNFFSTK-DQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKY-SYKVSEMKVRP 325
The following BLAST results are available for this feature:
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