TCONS_00000681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000681
Unique NameTCONS_00000681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000681 ID=TCONS_00000681|Name=TCONS_00000681|organism=Clytia hemisphaerica|type=transcript|length=460bp
TATCGGTCTTGTTGTCTTGAATGCTTGATTTCACTGTCAGCTTCTGGTGT
TGGATTTTCAGCTCATCTTCGAGGAAGGTGCACAGTTTTGACCAAGTCTT
CTCAGGTGTAAGAGTGACGTTTGATATCTGTGTCAACCATCTTGATAGCC
TGGCATCACCAAGCAGGTTATAGACTTTGTTGATTGCACCACCGTAATAC
AGATAATTCTCGACGTGATGTTCCCTTGCCAAAGATGTAAGGTCCTTGAT
GAGGTTGACAATATTGGTCATTGATTCAATGATTGATCCAGTGTCTTTGG
AGCGTTGAATggaatttgatgacgtcagttgGTTAATTTTTCTTTGGAGG
ATGAGCATGACGTTGCCATAGGCTTGATTCAGTCGATCCCAAATTTCGTC
TATGTCATCTTGAGTTTTGACACAACTCAGGGCTGGTTCCTTCAGATAGT
TATTCTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00000681-protein

>TCONS_00000681-protein ID=TCONS_00000681-protein|Name=TCONS_00000681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
LKNNYLKEPALSCVKTQDDIDEIWDRLNQAYGNVMLILQRKINQLTSSNS
IQRSKDTGSIIESMTNIVNLIKDLTSLAREHHVENYLYYGGAINKVYNLL
GDARLSRWLTQISNVTLTPEKTWSKLCTFLEDELKIQHQKLTVKSSIQDN
KTD
Run BLAST on NCBI

transcript from alignment at sc0000002:1726375..1726834

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000681 ID=TCONS_00000681|Name=TCONS_00000681|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000002:1726375..1726834 (Clytia hemisphaerica)
CTCAAGAATAACTATCTGAAGGAACCAGCCCTGAGTTGTGTCAAAACTCA
AGATGACATAGACGAAATTTGGGATCGACTGAATCAAGCCTATGGCAACG
TCATGCTCATCCTCCAAAGAAAAATTAACcaactgacgtcatcaaattcc
ATTCAACGCTCCAAAGACACTGGATCAATCATTGAATCAATGACCAATAT
TGTCAACCTCATCAAGGACCTTACATCTTTGGCAAGGGAACATCACGTCG
AGAATTATCTGTATTACGGTGGTGCAATCAACAAAGTCTATAACCTGCTT
GGTGATGCCAGGCTATCAAGATGGTTGACACAGATATCAAACGTCACTCT
TACACCTGAGAAGACTTGGTCAAAACTGTGCACCTTCCTCGAAGATGAGC
TGAAAATCCAACACCAGAAGCTGACAGTGAAATCAAGCATTCAAGACAAC
AAGACCGATA

Coding sequence (CDS) from alignment at sc0000002:1726375..1726834

>TCONS_00000681 ID=TCONS_00000681|Name=TCONS_00000681|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000002:1726375..1726834 (Clytia hemisphaerica)
CTCAAGAATAACTATCTGAAGGAACCAGCCCTGAGTTGTGTCAAAACTCA
AGATGACATAGACGAAATTTGGGATCGACTGAATCAAGCCTATGGCAACG
TCATGCTCATCCTCCAAAGAAAAATTAACcaactgacgtcatcaaattcc
ATTCAACGCTCCAAAGACACTGGATCAATCATTGAATCAATGACCAATAT
TGTCAACCTCATCAAGGACCTTACATCTTTGGCAAGGGAACATCACGTCG
AGAATTATCTGTATTACGGTGGTGCAATCAACAAAGTCTATAACCTGCTT
GGTGATGCCAGGCTATCAAGATGGTTGACACAGATATCAAACGTCACTCT
TACACCTGAGAAGACTTGGTCAAAACTGTGCACCTTCCTCGAAGATGAGC
TGAAAATCCAACACCAGAAGCTGACAGTGAAATCAAGCATTCAAGACAAC
AAGACCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000427XLOC_000427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000681-exon-sc0000002-1491911889:1726375..1726834TCONS_00000681-exon-sc0000002-1491911889:1726375..1726834Clytia hemisphaericaexon
TCONS_00000681-exon-sc0000002-1510915933:1726375..1726834TCONS_00000681-exon-sc0000002-1510915933:1726375..1726834Clytia hemisphaericaexon
TCONS_00000681-exon-sc0000002-1575043694:1726375..1726834TCONS_00000681-exon-sc0000002-1575043694:1726375..1726834Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000681-proteinTCONS_00000681-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1726375..1726834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.424764	0.18699	0.256614	0.701404	0.321583	0	0	0	0.407022	0.572808	0	0.350551	0.154276	0.142174	0.188335	0.237038	0.484099	0.125301	0.673976	0.704007	0.276279	0	0.735989	2.74469	1.5993	0.387626	0.71338	1.7815	0.571761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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