TCONS_00000667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000667
Unique NameTCONS_00000667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000667 ID=TCONS_00000667|Name=TCONS_00000667|organism=Clytia hemisphaerica|type=transcript|length=614bp
ATTACCCATTGTTCCAGATTGTCCTGGTTTTCATTTTGAGTTTTTGTTAG
AATGTTGGGGATCTAAAAATATTCTCTACTTTTCACATAAAAAtggtctg
gtctgtaatttttcaGAGAGTGAGAGGAAGGAAAACAAAATCGCGACGGC
CCTCAGTAAACAGAAGTAGATTTTagtactttttacaaaaatgactACAG
TAACTAAAGTTACGGAGCAAATTTGaaccttttttctttaaatgacTGTT
AAAAGGTTCTAGTATTGTACTCTCACAACCCAgcccaattggggtagcca
attggctaccctgctttttagaccaacccagaTTTCGCGGaccctaaaac
acccgatttcttagaaaatcgtacaaaaatattcacaaaaggATGCAAAT
TTGAACACTTTAAgaatttaaaaagttaagaattcgAAAACTTAATAAta
ttgaatgttcttataaaaaacttgtactgaaactaaattttgcattattt
tttaaaattgccCAGACAAGTGAAAATTCTGCTTGGGAAAGAATTTTCAA
GATGATGTGTAAACTTTTGTAACCTAGGGACACTTAAATCAGATTTTTCA
TTCCTACGACCCTT
Run BLAST on NCBI

transcript from alignment at sc0000002:1464287..1464900

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000667 ID=TCONS_00000667|Name=TCONS_00000667|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at sc0000002:1464287..1464900 (Clytia hemisphaerica)
AAGGGTCGTAGGAATGAAAAATCTGATTTAAGTGTCCCTAGGTTACAAAA GTTTACACATCATCTTGAAAATTCTTTCCCAAGCAGAATTTTCACTTGTC TGggcaattttaaaaaataatgcaaaatttagtttcagtacaagtttttt ataagaacattcaataTTATTAAGTTTTcgaattcttaactttttaaatt cTTAAAGTGTTCAAATTTGCATccttttgtgaatatttttgtacgatttt ctaagaaatcgggtgttttagggtCCGCGAAAtctgggttggtctaaaaa gcagggtagccaattggctaccccaattgggcTGGGTTGTGAGAGTACAA TACTAGAACCTTTTAACAgtcatttaaagaaaaaaggttCAAATTTGCTC CGTAACTTTAGTTACTGTagtcatttttgtaaaaagtactAAAATCTACT TCTGTTTACTGAGGGCCGTCGCGATTTTGTTTTCCTTCCTCTCACTCTCt gaaaaattacagaccagaccaTTTTTATGTGAAAAGTAGAGAATATTTTT AGATCCCCAACATTCTAACAAAAACTCAAAATGAAAACCAGGACAATCTG GAACAATGGGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000413XLOC_000413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000667-exon-sc0000002-1491911889:1464287..1464900TCONS_00000667-exon-sc0000002-1491911889:1464287..1464900Clytia hemisphaericaexon
TCONS_00000667-exon-sc0000002-1510915933:1464287..1464900TCONS_00000667-exon-sc0000002-1510915933:1464287..1464900Clytia hemisphaericaexon
TCONS_00000667-exon-sc0000002-1575043694:1464287..1464900TCONS_00000667-exon-sc0000002-1575043694:1464287..1464900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1464287..1464900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175199 0.0854232 0.0991845 0.29111 0.236265 0.1867 0.450491 0.210872 0.0738183 0 0.0887499 0.466726 0.349558 0.6713 0.0497418 0.266903 0.0657605 0.134805 0.0931201 0 0.254088 0.495741 0.200879 0.182629 0 0.67151 0.120116 0.384573 1.16674 0.495302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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