TCONS_00000667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000667
Unique NameTCONS_00000667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000667 ID=TCONS_00000667|Name=TCONS_00000667|organism=Clytia hemisphaerica|type=transcript|length=614bp
ATTACCCATTGTTCCAGATTGTCCTGGTTTTCATTTTGAGTTTTTGTTAG
AATGTTGGGGATCTAAAAATATTCTCTACTTTTCACATAAAAAtggtctg
gtctgtaatttttcaGAGAGTGAGAGGAAGGAAAACAAAATCGCGACGGC
CCTCAGTAAACAGAAGTAGATTTTagtactttttacaaaaatgactACAG
TAACTAAAGTTACGGAGCAAATTTGaaccttttttctttaaatgacTGTT
AAAAGGTTCTAGTATTGTACTCTCACAACCCAgcccaattggggtagcca
attggctaccctgctttttagaccaacccagaTTTCGCGGaccctaaaac
acccgatttcttagaaaatcgtacaaaaatattcacaaaaggATGCAAAT
TTGAACACTTTAAgaatttaaaaagttaagaattcgAAAACTTAATAAta
ttgaatgttcttataaaaaacttgtactgaaactaaattttgcattattt
tttaaaattgccCAGACAAGTGAAAATTCTGCTTGGGAAAGAATTTTCAA
GATGATGTGTAAACTTTTGTAACCTAGGGACACTTAAATCAGATTTTTCA
TTCCTACGACCCTT
Run BLAST on NCBI

transcript from alignment at sc0000002:1464287..1464900

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000667 ID=TCONS_00000667|Name=TCONS_00000667|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at sc0000002:1464287..1464900 (Clytia hemisphaerica)
AAGGGTCGTAGGAATGAAAAATCTGATTTAAGTGTCCCTAGGTTACAAAA
GTTTACACATCATCTTGAAAATTCTTTCCCAAGCAGAATTTTCACTTGTC
TGggcaattttaaaaaataatgcaaaatttagtttcagtacaagtttttt
ataagaacattcaataTTATTAAGTTTTcgaattcttaactttttaaatt
cTTAAAGTGTTCAAATTTGCATccttttgtgaatatttttgtacgatttt
ctaagaaatcgggtgttttagggtCCGCGAAAtctgggttggtctaaaaa
gcagggtagccaattggctaccccaattgggcTGGGTTGTGAGAGTACAA
TACTAGAACCTTTTAACAgtcatttaaagaaaaaaggttCAAATTTGCTC
CGTAACTTTAGTTACTGTagtcatttttgtaaaaagtactAAAATCTACT
TCTGTTTACTGAGGGCCGTCGCGATTTTGTTTTCCTTCCTCTCACTCTCt
gaaaaattacagaccagaccaTTTTTATGTGAAAAGTAGAGAATATTTTT
AGATCCCCAACATTCTAACAAAAACTCAAAATGAAAACCAGGACAATCTG
GAACAATGGGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000413XLOC_000413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000667-exon-sc0000002-1491911889:1464287..1464900TCONS_00000667-exon-sc0000002-1491911889:1464287..1464900Clytia hemisphaericaexon
TCONS_00000667-exon-sc0000002-1510915933:1464287..1464900TCONS_00000667-exon-sc0000002-1510915933:1464287..1464900Clytia hemisphaericaexon
TCONS_00000667-exon-sc0000002-1575043694:1464287..1464900TCONS_00000667-exon-sc0000002-1575043694:1464287..1464900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1464287..1464900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175199	0.0854232	0.0991845	0.29111	0.236265	0.1867	0.450491	0.210872	0.0738183	0	0.0887499	0.466726	0.349558	0.6713	0.0497418	0.266903	0.0657605	0.134805	0.0931201	0	0.254088	0.495741	0.200879	0.182629	0	0.67151	0.120116	0.384573	1.16674	0.495302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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