TCONS_00000664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000664
Unique NameTCONS_00000664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000664 ID=TCONS_00000664|Name=TCONS_00000664|organism=Clytia hemisphaerica|type=transcript|length=510bp
TTTATTTAAACTGCCTCTAATCCCTTTAAACTTTAAAGGAAGAATCCAAG
AAGACCTTAAAATGATTAGTCAGTGTCCCGAGCACTTGGGCTTTTTACTC
ATTGTTTTCTTTCCAAAGTGACgtgattttttattattgaaatttgacaa
aattcaATCATGAAATAAATGGTTATTGTGAATTCTGGTAGCAAACAACA
GGTTAAACTAGTACTGATTTTTGTGACAATGTTGGATACAATATAGTGAA
TTCCTTTCAGCTTAGCAATTATTTTATATATGTGACAAACCAAGtagaac
aagctagatgctgaatggacctacctgatgatgaaacttagatagcaata
aggagaaaaataaaaacaatcattgattgttgatgggggggggaggggag
tggggaaaaagaaatagaaagttccggttgcaaaattgcaaaagttttat
tgacaattgaatcatgcttgatggtggcattgttatcaataattttttta
agtaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000002:1421298..1421807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000664 ID=TCONS_00000664|Name=TCONS_00000664|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000002:1421298..1421807 (Clytia hemisphaerica)
tttttttacttaaaaaaattattgataacaatgccaccatcaagcatgat tcaattgtcaataaaacttttgcaattttgcaaccggaactttctatttc tttttccccactcccctcccccccccatcaacaatcaatgattgttttta tttttctccttattgctatctaagtttcatcatcaggtaggtccattcag catctagcttgttctaCTTGGTTTGTCACATATATAAAATAATTGCTAAG CTGAAAGGAATTCACTATATTGTATCCAACATTGTCACAAAAATCAGTAC TAGTTTAACCTGTTGTTTGCTACCAGAATTCACAATAACCATTTATTTCA TGATtgaattttgtcaaatttcaataataaaaaatcacGTCACTTTGGAA AGAAAACAATGAGTAAAAAGCCCAAGTGCTCGGGACACTGACTAATCATT TTAAGGTCTTCTTGGATTCTTCCTTTAAAGTTTAAAGGGATTAGAGGCAG TTTAAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000410XLOC_000410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000664-exon-sc0000002-1491911889:1421298..1421807TCONS_00000664-exon-sc0000002-1491911889:1421298..1421807Clytia hemisphaericaexon
TCONS_00000664-exon-sc0000002-1510915933:1421298..1421807TCONS_00000664-exon-sc0000002-1510915933:1421298..1421807Clytia hemisphaericaexon
TCONS_00000664-exon-sc0000002-1575043694:1421298..1421807TCONS_00000664-exon-sc0000002-1575043694:1421298..1421807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1421298..1421807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.03618 1.74259 6.55351 7.33701 0.160029 0.125604 0.309901 0.288198 1.04891 2.40182 0.613853 0.655045 0.879347 0.872436 0.96618 1.39987 1.51192 1.90309 1.93723 1.78326 1.50898 2.66378 1.6625 0.998973 0 0 3.24305 2.13941 3.22474 3.15443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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