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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000649 ID=TCONS_00000649|Name=TCONS_00000649|organism=Clytia hemisphaerica|type=transcript|length=872bp
AGTCGAGAAGTATTGCATCTACCTGTTCACCATTGTTTAAGGCCTTAGCA
AAGTCGTTTCTAGTGGTTAAGAGTTGGGTTTCGCATGAGCGGTTCTTACG
GAACCCATGCTGATTGTTGGATAGTATTTTCTGTTCCTCCATGTGATTTA
TAATATGACTATGTAGAACATGCTCTAGGAGTTTACACGAAATGGAAGTG
AGAATCACTGGTCGGTAGTTTTTTGCTTTTGATTTAGATTTGTTGTTACC
TTTGTGTATGGGTGTTATACGAGCCTGTTTCCAGTCGTTTGGTACTGATG
ATTGTTTCAATGATGCATTAAACAGCAGAACGTAAGCATCTGCAACTTGT
TCCGAGCATTCTTCTAGTAGTCGTGATGCAACATTGTCTGGTCCGCTTGC
TTTTGCTGGGCCAAGATTGTTGAGGAGTTTTACAATACCGTTCCCTGTTA
TGTTGATTTGGTTGATTTGGCAACCTTCTTTGTCGTTGATGGTGGTTGAT
TTGCCATCATCTTTTGAAAAAACGCTACAGTATTGTTTATTCAGTATCTC
AGCTATGACTTTATCGTCCGATTGAAGATGACCGTTCTCGTCGACTAATG
GTGCGACTCCGACAATGTCTCTACGCTttgattttatatatttaaaaagc
tttttcttgTCTCCACCAACAGAATTCTTGATAAAGATACTTTTTGCTTT
GTTGTATAGTTTACTTGCCATACGTGAACATTCTTGAAACCTCNAATACC
TTTTGCTTTGTTGTATCATAGTATACTATGGTTGTATAGTTTACTTGCCA
TACGAGCACATTCTTGAAACCTCTTCCAATCTTTTGGGTCTTTAGTAGAT
TTATAACGTCTGTACCTACGTT Run BLAST on NCBI protein sequence of TCONS_00000649-protein >TCONS_00000649-protein ID=TCONS_00000649-protein|Name=TCONS_00000649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MIQQSKRYXRFQECSRMASKLYNKAKSIFIKNSVGGDKKKLFKYIKSKRR
DIVGVAPLVDENGHLQSDDKVIAEILNKQYCSVFSKDDGKSTTINDKEGC
QINQINITGNGIVKLLNNLGPAKASGPDNVASRLLEECSEQVADAYVLLF
NASLKQSSVPNDWKQARITPIHKGNNKSKSKAKNYRPVILTSISCKLLEH
VLHSHIINHMEEQKILSNNQHGFRKNRSCETQLLTTRNDFAKALNNGEQV
DAILLD Run BLAST on NCBI transcript from alignment at sc0000002:941322..942193 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000649 ID=TCONS_00000649|Name=TCONS_00000649|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0000002:941322..942193 (Clytia hemisphaerica)
AACGTAGGTACAGACGTTATAAATCTACTAAAGACCCAAAAGATTGGAAG
AGGTTTCAAGAATGTGCTCGTATGGCAAGTAAACTATACAACCATAGTAT
ACTATGATACAACAAAGCAAAAGGTATTNGAGGTTTCAAGAATGTTCACG
TATGGCAAGTAAACTATACAACAAAGCAAAAAGTATCTTTATCAAGAATT
CTGTTGGTGGAGAcaagaaaaagctttttaaatatataaaatcaaAGCGT
AGAGACATTGTCGGAGTCGCACCATTAGTCGACGAGAACGGTCATCTTCA
ATCGGACGATAAAGTCATAGCTGAGATACTGAATAAACAATACTGTAGCG
TTTTTTCAAAAGATGATGGCAAATCAACCACCATCAACGACAAAGAAGGT
TGCCAAATCAACCAAATCAACATAACAGGGAACGGTATTGTAAAACTCCT
CAACAATCTTGGCCCAGCAAAAGCAAGCGGACCAGACAATGTTGCATCAC
GACTACTAGAAGAATGCTCGGAACAAGTTGCAGATGCTTACGTTCTGCTG
TTTAATGCATCATTGAAACAATCATCAGTACCAAACGACTGGAAACAGGC
TCGTATAACACCCATACACAAAGGTAACAACAAATCTAAATCAAAAGCAA
AAAACTACCGACCAGTGATTCTCACTTCCATTTCGTGTAAACTCCTAGAG
CATGTTCTACATAGTCATATTATAAATCACATGGAGGAACAGAAAATACT
ATCCAACAATCAGCATGGGTTCCGTAAGAACCGCTCATGCGAAACCCAAC
TCTTAACCACTAGAAACGACTTTGCTAAGGCCTTAAACAATGGTGAACAG
GTAGATGCAATACTTCTCGACT Coding sequence (CDS) from alignment at sc0000002:941322..942193 >TCONS_00000649 ID=TCONS_00000649|Name=TCONS_00000649|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000002:941322..942193 (Clytia hemisphaerica)
ATGATACAACAAAGCAAAAGGTATTNGAGGTTTCAAGAATGTTCACGTAT
GGCAAGTAAACTATACAACAAAGCAAAAAGTATCTTTATCAAGAATTCTG
TTGGTGGAGAcaagaaaaagctttttaaatatataaaatcaaAGCGTAGA
GACATTGTCGGAGTCGCACCATTAGTCGACGAGAACGGTCATCTTCAATC
GGACGATAAAGTCATAGCTGAGATACTGAATAAACAATACTGTAGCGTTT
TTTCAAAAGATGATGGCAAATCAACCACCATCAACGACAAAGAAGGTTGC
CAAATCAACCAAATCAACATAACAGGGAACGGTATTGTAAAACTCCTCAA
CAATCTTGGCCCAGCAAAAGCAAGCGGACCAGACAATGTTGCATCACGAC
TACTAGAAGAATGCTCGGAACAAGTTGCAGATGCTTACGTTCTGCTGTTT
AATGCATCATTGAAACAATCATCAGTACCAAACGACTGGAAACAGGCTCG
TATAACACCCATACACAAAGGTAACAACAAATCTAAATCAAAAGCAAAAA
ACTACCGACCAGTGATTCTCACTTCCATTTCGTGTAAACTCCTAGAGCAT
GTTCTACATAGTCATATTATAAATCACATGGAGGAACAGAAAATACTATC
CAACAATCAGCATGGGTTCCGTAAGAACCGCTCATGCGAAACCCAACTCT
TAACCACTAGAAACGACTTTGCTAAGGCCTTAAACAATGGTGAACAGGTA
GATGCAATACTTCTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000649-exon-sc0000002-1491911889:941322..942193 | TCONS_00000649-exon-sc0000002-1491911889:941322..942193 | Clytia hemisphaerica | exon |
| TCONS_00000649-exon-sc0000002-1510915933:941322..942193 | TCONS_00000649-exon-sc0000002-1510915933:941322..942193 | Clytia hemisphaerica | exon |
| TCONS_00000649-exon-sc0000002-1575043694:941322..942193 | TCONS_00000649-exon-sc0000002-1575043694:941322..942193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:941322..942193 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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