TCONS_00000639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000639
Unique NameTCONS_00000639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000639 ID=TCONS_00000639|Name=TCONS_00000639|organism=Clytia hemisphaerica|type=transcript|length=1062bp
TTCAGAACAGTCAGCTTTGGACAAATTcgtgtgttttgtttttgataagc
TCTCATGTTCTTTTAACACCCCTTCAAGGCTTGACAGCTAACAATTAGAC
TAAGCTAGTACacgtcttttgtctttttttagctCTCtctcttgtagagc
tttgacgCACAGCAGAGAGAGCTTGGTAAATTTTGTGAAGACACCCGGTT
TAGTTTgtacatcaaaagcccttaggatgataAAGACAAAAGACTGTATA
GTTGATGCTCTCCTCTATAAGATAAGGAGAATAGACTTTCACGTTTCAAT
ACTTAGGATGATATGAGTGAGGGAAGCAACAACAAAGTTTCTCTCACATC
CATTGACCATTTAAAAGGTGGAGGTAATTGTGATTTATGCTGGAACTCTT
AATGCTTGAAATTATCTTACATGAAATGACACATGACATTGCACCCAAAG
GAATTAATTTTCATTAATGATGAGATACtctaaggcggcaatcacaaata
tcttcgtttcgcatCGCCCGACCAACTctcaaaaattgagtagaattgag
tcggtaaatttgtcagactttttctttccttcgttcaaaatttttattat
tgtcaaTTTCTTGCGAgtgatttctagcgcattcggggcattttgacttt
gtttatcattgcATGCGCCATTTTTGGTTGGAAGTCAGTGTTCAAgggtc
ataatttgaaaccacccatAACACGCGGTtattttggctgctggctggct
ggctggcagtttccttcaagaataccgTAGTAACTAAAAGGTGAAACGTC
agagaaacgggtggaaacggtGGAAACGACACGGAAAAGGGTGGAAACGA
AACGGAAACGATATGGAAACCAGTGGAAACAATACGGAAATTTATGCAAC
GCTAGCGCAGCATTTTAAAGATACATCTCCGTCTATCACAGGCTTTGCAT
AACCCTAAGAATATACGGATATAGGTAATCTATGAAAATTTTtgtgaaga
agtcgttgcagtgcacaCGGCAATCTTTGattggattaatcggattcaaa
tttccttgtttt
Run BLAST on NCBI

transcript from alignment at sc0000002:662758..663819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000639 ID=TCONS_00000639|Name=TCONS_00000639|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0000002:662758..663819 (Clytia hemisphaerica)
aaaacaaggaaatttgaatccgattaatccaatCAAAGATTGCCGtgtgc actgcaacgacttcttcacaAAAATTTTCATAGATTACCTATATCCGTAT ATTCTTAGGGTTATGCAAAGCCTGTGATAGACGGAGATGTATCTTTAAAA TGCTGCGCTAGCGTTGCATAAATTTCCGTATTGTTTCCACTGGTTTCCAT ATCGTTTCCGTTTCGTTTCCACCCTTTTCCGTGTCGTTTCCaccgtttcc acccgtttctctGACGTTTCACCTTTTAGTTACTAcggtattcttgaagg aaactgccagccagccagccagcagccaaaataACCGCGTGTTatgggtg gtttcaaattatgacccTTGAACACTGACTTCCAACCAAAAATGGCGCAT gcaatgataaacaaagtcaaaatgccccgaatgcgctagaaatcacTCGC AAGAAAttgacaataataaaaattttgaacgaaggaaagaaaaagtctga caaatttaccgactcaattctactcaatttttgagAGTTGGTCGGGCGat gcgaaacgaagatatttgtgattgccgccttagaGTATCTCATCATTAAT GAAAATTAATTCCTTTGGGTGCAATGTCATGTGTCATTTCATGTAAGATA ATTTCAAGCATTAAGAGTTCCAGCATAAATCACAATTACCTCCACCTTTT AAATGGTCAATGGATGTGAGAGAAACTTTGTTGTTGCTTCCCTCACTCAT ATCATCCTAAGTATTGAAACGTGAAAGTCTATTCTCCTTATCTTATAGAG GAGAGCATCAACTATACAGTCTTTTGTCTTtatcatcctaagggcttttg atgtacAAACTAAACCGGGTGTCTTCACAAAATTTACCAAGCTCTCTCTG CTGTGcgtcaaagctctacaagagaGAGagctaaaaaaagacaaaagacg tGTACTAGCTTAGTCTAATTGTTAGCTGTCAAGCCTTGAAGGGGTGTTAA AAGAACATGAGAgcttatcaaaaacaaaacacacgAATTTGTCCAAAGCT GACTGTTCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000385XLOC_000385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000639-exon-sc0000002-1491911889:662758..663819TCONS_00000639-exon-sc0000002-1491911889:662758..663819Clytia hemisphaericaexon
TCONS_00000639-exon-sc0000002-1510915933:662758..663819TCONS_00000639-exon-sc0000002-1510915933:662758..663819Clytia hemisphaericaexon
TCONS_00000639-exon-sc0000002-1575043694:662758..663819TCONS_00000639-exon-sc0000002-1575043694:662758..663819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:662758..663819 .
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.388287 0.52726 0.894753 0.659063 1.32897 0.878437 1.41075 1.25128 0.84981 1.29832 2.0284 1.59289 0.950508 1.63742 0.795425 0.669262 0.908786 0.628612 0.530555 0.786516 0.346298 0.717246 0.0508601 0.0867111 1.43519 1.82876 0.456244 0.379977 0.600126 0.235167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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