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TCONS_00000637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000637
Unique NameTCONS_00000637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000637 ID=TCONS_00000637|Name=TCONS_00000637|organism=Clytia hemisphaerica|type=transcript|length=276bp
CGAATTCCCCTTAAAACTAAAGTTTGAGAGCATCAACAAtaccatcttta
tcatcctaagggctttGCTAAACCGGCgcttgcgacgacgggaaccgacT
AATGATACAACAGAAGCTTCACTGTTGGTCGTTTACCTGTTTCCAATCAT
TTCTCCCCGTTTCCGTGTCGTTTCCACCAGTTTCCCTGTCGTTTCTCCCC
GTTTCCAGGGCGATTCCCCCCGTTTCCatatcgtttccacccgtttctct
GACGTTTCAGGTTTTAGTTATTAGGc
Run BLAST on NCBI

transcript from alignment at sc0000002:660810..661085

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000637 ID=TCONS_00000637|Name=TCONS_00000637|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0000002:660810..661085 (Clytia hemisphaerica)
gCCTAATAACTAAAACCTGAAACGTCagagaaacgggtggaaacgatatG GAAACGGGGGGAATCGCCCTGGAAACGGGGAGAAACGACAGGGAAACTGG TGGAAACGACACGGAAACGGGGAGAAATGATTGGAAACAGGTAAACGACC AACAGTGAAGCTTCTGTTGTATCATTAgtcggttcccgtcgtcgcaagcG CCGGTTTAGCaaagcccttaggatgataaagatggtaTTGTTGATGCTCT CAAACTTTAGTTTTAAGGGGAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000383XLOC_000383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000637-exon-sc0000002-1491911889:660810..661085TCONS_00000637-exon-sc0000002-1491911889:660810..661085Clytia hemisphaericaexon
TCONS_00000637-exon-sc0000002-1510915933:660810..661085TCONS_00000637-exon-sc0000002-1510915933:660810..661085Clytia hemisphaericaexon
TCONS_00000637-exon-sc0000002-1575043694:660810..661085TCONS_00000637-exon-sc0000002-1575043694:660810..661085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:660810..661085 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.521429 0.508476 1.77117 4.62083 3.13416 2.22264 1.34076 3.13801 1.75759 3.80986 1.58483 3.47269 2.4275 2.16084 1.48042 2.22421 1.95717 1.60483 3.32574 3.48015 0.504147 1.47543 0 1.08708 4.47868 4.8155 3.57491 0.763049 2.31498 0.710809
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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