TCONS_00000634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000634
Unique NameTCONS_00000634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000634 ID=TCONS_00000634|Name=TCONS_00000634|organism=Clytia hemisphaerica|type=transcript|length=793bp
acTGATCCCTGTGCTCAGGACAGAATAGAGCTAGCTTATTTAGCTAGCTA
GAGAATATTCATACAAATGAGGAGAGGGTGATTACTCTGGTGTGCTCTAT
TTGAGCTACCTTCCACCTCAGATAAATTCTCTGGCATGCTCTTCAACGTT
CTTGCATCAGAGTGGGGGTGACCTATTCTCTTCACATGGTATAAATTAAC
CCTGATGAAGATAGTAAAACGCAAGATTGAGTGAAGATTGAACCCTGGCT
TCCGTCTGAGAGTTGAGAATGATAACTAATACAGTGGTTTATgttgaaat
aaaacttgaattaTGTTTGTCCAGCCTGTTTAAATCCTGTTGTTGTACCT
CCACCTAGTATTTTTGCTATAGATGGTTCTAATCTTGAAGTTGTTCAGAC
CTTTTGTTATCTTGGTGATATGATTGGTAACAATGGTGGCTGTTTTGATG
CCATTACTTTGCGTATCAAATCAGCATGGAACAAATTCAGGGAGTTACTT
CccattttaacaaataaaagtaTTCCCATCAAGTGTCGTGGTCATGTATT
CTCATCGGCTGTGAGAGGGAGGTGTCATGTTGCATGCGAGCTCAACTTGG
GCTGTAACTGTGGATGATTGTAACAGGCTTATTGGCAATGATAATGCTAT
GGTCAGGTGGATCTGTTCGACACGTTTGTTAGAAAGAATCTCTATGACTG
CTATTAGGGGTAGGCTTGGCGTTGATTCAATTGACATTTTGCTACGCCAA
GGTAGCCTACGCTGGTTTGGCCATGTCCAACGTATGGAAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000002:571790..572582

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000634 ID=TCONS_00000634|Name=TCONS_00000634|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0000002:571790..572582 (Clytia hemisphaerica)
CTTCTTCCATACGTTGGACATGGCCAAACCAGCGTAGGCTACCTTGGCGT
AGCAAAATGTCAATTGAATCAACGCCAAGCCTACCCCTAATAGCAGTCAT
AGAGATTCTTTCTAACAAACGTGTCGAACAGATCCACCTGACCATAGCAT
TATCATTGCCAATAAGCCTGTTACAATCATCCACAGTTACAGCCCAAGTT
GAGCTCGCATGCAACATGACACCTCCCTCTCACAGCCGATGAGAATACAT
GACCACGACACTTGATGGGAAtacttttatttgttaaaatggGAAGTAAC
TCCCTGAATTTGTTCCATGCTGATTTGATACGCAAAGTAATGGCATCAAA
ACAGCCACCATTGTTACCAATCATATCACCAAGATAACAAAAGGTCTGAA
CAACTTCAAGATTAGAACCATCTATAGCAAAAATACTAGGTGGAGGTACA
ACAACAGGATTTAAACAGGCTGGACAAACAtaattcaagttttatttcaa
cATAAACCACTGTATTAGTTATCATTCTCAACTCTCAGACGGAAGCCAGG
GTTCAATCTTCACTCAATCTTGCGTTTTACTATCTTCATCAGGGTTAATT
TATACCATGTGAAGAGAATAGGTCACCCCCACTCTGATGCAAGAACGTTG
AAGAGCATGCCAGAGAATTTATCTGAGGTGGAAGGTAGCTCAAATAGAGC
ACACCAGAGTAATCACCCTCTCCTCATTTGTATGAATATTCTCTAGCTAG
CTAAATAAGCTAGCTCTATTCTGTCCTGAGCACAGGGATCAgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000380XLOC_000380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000634-exon-sc0000002-1491911889:571790..572582TCONS_00000634-exon-sc0000002-1491911889:571790..572582Clytia hemisphaericaexon
TCONS_00000634-exon-sc0000002-1510915933:571790..572582TCONS_00000634-exon-sc0000002-1510915933:571790..572582Clytia hemisphaericaexon
TCONS_00000634-exon-sc0000002-1575043694:571790..572582TCONS_00000634-exon-sc0000002-1575043694:571790..572582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:571790..572582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.364497	0.770125	1.10054	1.144	1.14694	0.971064	0.468619	0.511835	0.665502	0.760922	0.307737	0.768719	0.808052	0.377627	0.620921	0.481248	0.684067	0.560917	0.710359	1.01365	0.822306	0.343793	0.278617	0.253303	0.913138	0.640321	0.666398	0.266699	0.269709	0.89307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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